mRNA_E-siliculosus-1a_M_contig95.17490.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17490.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17490.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17490.1 vs. uniprot
Match: A0A6H5KCD7_9PHAE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD7_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 6.820e-80
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 2
Query:  623 MGASTAGERGGREPAAGAMSAIGEVAKQLQSNYRETTPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDSGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 1018
            MGASTAGERGGREPAAGAMSAIGEVAKQLQSNYRE TPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASD+GGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG
Sbjct:    1 MGASTAGERGGREPAAGAMSAIGEVAKQLQSNYREITPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 132          
BLAST of mRNA_E-siliculosus-1a_M_contig95.17490.1 vs. uniprot
Match: D7G1T4_ECTSI (Oligosaccharyltransferase, DAD1 subunit (Or epsilon subunit) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T4_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 8.380e-48
Identity = 95/132 (71.97%), Postives = 96/132 (72.73%), Query Frame = 2
Query:  623 MGASTAGERGGREPAAGAMSAIGEVAKQLQSNYRETTPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDSGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 1018
            MGASTAGERGGREPAAGAMSAIGEVAKQLQSNYRETTPKRLRMLDMFLLFVF TGVLQ                                   VMEASD+GGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG
Sbjct:    1 MGASTAGERGGREPAAGAMSAIGEVAKQLQSNYRETTPKRLRMLDMFLLFVFTTGVLQ-----------------------------------VMEASDNGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 97          
BLAST of mRNA_E-siliculosus-1a_M_contig95.17490.1 vs. uniprot
Match: A0A6G0XIX2_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIX2_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.030e-34
Identity = 65/121 (53.72%), Postives = 88/121 (72.73%), Query Frame = 2
Query:  656 REPAAGAMSAIGEVAKQLQSNYRETTPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDSGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 1018
            +E AA    +   +   L + Y + TP++++++D FL++V ATG+LQFVYCVLVG+FPFNSFL+GF STVG FVLTVSLRMQ+  ++        RS +R FA+Y+ CN +LFLVVMNFMG
Sbjct:    8 KESAAAEPPSTQSIVADLWTQYSKNTPRKVKLIDGFLVYVLATGILQFVYCVLVGTFPFNSFLSGFLSTVGVFVLTVSLRMQIDPSNQQAFAASPRSPQRAFADYLFCNCILFLVVMNFMG 128          
BLAST of mRNA_E-siliculosus-1a_M_contig95.17490.1 vs. uniprot
Match: K3WS81_GLOUD (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS81_GLOUD)

HSP 1 Score: 131 bits (330), Expect = 1.810e-34
Identity = 62/111 (55.86%), Postives = 85/111 (76.58%), Query Frame = 2
Query:  686 IGEVAKQLQSNYRETTPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDSGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 1018
            +G +    Q+ Y++TTPK+++++D FL +V ATG+LQF+YCVLVG+FPFNSFLAGF  TVG FVL VSLRMQ+   ++     + RS +R FA+Y+ CN++LFLVV NFMG
Sbjct:    7 VGGILADFQTKYQQTTPKKIKLIDGFLAYVLATGILQFIYCVLVGTFPFNSFLAGFVCTVGVFVLGVSLRMQINPENE----FKDRSEQRAFADYLFCNIILFLVVFNFMG 113          
BLAST of mRNA_E-siliculosus-1a_M_contig95.17490.1 vs. uniprot
Match: F0W9F1_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9F1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.250e-34
Identity = 66/113 (58.41%), Postives = 83/113 (73.45%), Query Frame = 2
Query:  680 SAIGEVAKQLQSNYRETTPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDSGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 1018
            S +  +    +  YR+ TPK+L++LD FL +V ATG+LQFVYC+LVGSFPFNSFL+GF  TVG FVLTVSLRMQV    D+      RS +R FA+Y+ CN++LFLVV NFMG
Sbjct:   13 STVCAIWNDFKHQYRKETPKKLQLLDGFLAYVLATGILQFVYCILVGSFPFNSFLSGFICTVGVFVLTVSLRMQV----DASNKFTDRSEQRAFADYLFCNLILFLVVFNFMG 121          
BLAST of mRNA_E-siliculosus-1a_M_contig95.17490.1 vs. uniprot
Match: A0A485L3R2_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3R2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 4.010e-34
Identity = 62/108 (57.41%), Postives = 85/108 (78.70%), Query Frame = 2
Query:  695 VAKQLQSNYRETTPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDSGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 1018
            +  +L S Y + TP++++++D FL +V ATGVLQF+YC+LVG+FPFNSFL+GF +TVG FVLTVSLRMQ+  ++ +      RS +R FA+Y+ CN+VLFLVVMNFMG
Sbjct:   21 LLSELLSQYNKNTPRKIKLIDGFLAYVMATGVLQFLYCLLVGTFPFNSFLSGFIATVGVFVLTVSLRMQIDPSNAAAFAADPRSPQRAFADYLFCNLVLFLVVMNFMG 128          
BLAST of mRNA_E-siliculosus-1a_M_contig95.17490.1 vs. uniprot
Match: T0PSD9_SAPDV (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0PSD9_SAPDV)

HSP 1 Score: 130 bits (328), Expect = 5.150e-34
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 2
Query:  686 IGEVAKQLQSNYRETTPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDSGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 1018
            +  +   L S Y + TP++++++D FL +V ATGVLQFVYC+LVG+FPFNSFL+GF STVG FVLTVSLRMQ+   +        R+ ER FA+Y+ CN +LFLVVMNFMG
Sbjct:   15 VNGILSDLLSQYSKNTPRKMKLIDGFLAYVLATGVLQFVYCMLVGTFPFNSFLSGFISTVGVFVLTVSLRMQINPTNADAFSSAPRTPERAFADYLFCNFILFLVVMNFMG 125          
BLAST of mRNA_E-siliculosus-1a_M_contig95.17490.1 vs. uniprot
Match: D0NLD6_PHYIT (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NLD6_PHYIT)

HSP 1 Score: 129 bits (325), Expect = 1.090e-33
Identity = 63/111 (56.76%), Postives = 84/111 (75.68%), Query Frame = 2
Query:  686 IGEVAKQLQSNYRETTPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDSGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 1018
            +G +   L S Y +TTPK+++++D FL +V ATGVLQF+YC+LVG+FPFNSFLAGF  TVG FVL VSLRMQ+   ++ G     R+ +R FA+Y+ CN++LFLVV NFMG
Sbjct:   10 VGSILGDLCSKYDKTTPKKIKLIDGFLAYVLATGVLQFIYCLLVGNFPFNSFLAGFVCTVGVFVLAVSLRMQINPENNFGD----RTEQRAFADYLFCNIILFLVVFNFMG 116          
BLAST of mRNA_E-siliculosus-1a_M_contig95.17490.1 vs. uniprot
Match: A0A835YRC1_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC1_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.360e-33
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 2
Query:  680 SAIGEVAKQLQSNYRETTPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDSGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 1018
            S++ ++  +LQS+Y +TT ++LR+LD FL F   TGV Q VYC LVGSFPFNSFLAG   +VG FVLTVSLR+ +  + D    +R  S++  FAEYV CNM+LFL VMNFMG
Sbjct:    6 SSVSDIWSKLQSHYWQTTTQQLRVLDSFLAFTALTGVAQVVYCGLVGSFPFNSFLAGIMCSVGVFVLTVSLRLHLAPSGDGVAALRRDSVKNAFAEYVFCNMILFLAVMNFMG 118          
BLAST of mRNA_E-siliculosus-1a_M_contig95.17490.1 vs. uniprot
Match: M4B8W6_HYAAE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8W6_HYAAE)

HSP 1 Score: 127 bits (318), Expect = 1.290e-32
Identity = 61/111 (54.95%), Postives = 85/111 (76.58%), Query Frame = 2
Query:  686 IGEVAKQLQSNYRETTPKRLRMLDMFLLFVFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDSGGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG 1018
            +G + +   + Y ++TPK+L+++D FL +V ATGVLQF+YC+LVG+FPFNSFLAGF  TVG FVL VSLRMQV  A++     + R+ +R +A+Y+ CN++LFLVV NFMG
Sbjct:   13 VGSIVRDFCATYDKSTPKKLKLIDGFLAYVLATGVLQFLYCLLVGTFPFNSFLAGFVCTVGVFVLAVSLRMQVNPANN----FQDRTEQRAYADYLFCNIILFLVVFNFMG 119          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCD7_9PHAE6.820e-8098.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
D7G1T4_ECTSI8.380e-4871.97Oligosaccharyltransferase, DAD1 subunit (Or epsilo... [more]
A0A6G0XIX2_9STRA1.030e-3453.72Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
K3WS81_GLOUD1.810e-3455.86Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
F0W9F1_9STRA3.250e-3458.41Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A485L3R2_9STRA4.010e-3457.41Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
T0PSD9_SAPDV5.150e-3456.76Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
D0NLD6_PHYIT1.090e-3356.76Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A835YRC1_9STRA6.360e-3356.64Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
M4B8W6_HYAAE1.290e-3254.95Dolichyl-diphosphooligosaccharide--protein glycosy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:229385..232140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size399
Model size1021
Exons4
Ec32 orthologEc-07_004230.1
Ec32 ortholog descriptionOligosaccharyltransferase, DAD1 subunit (or epsilon subunit)
Hectar predicted targeting categorysignal anchor
BRITEko00000,ko00001,ko00002
Best eggNOG OGNA|NA|NA
Best tax levelPythiales
COG Functional cat.DO
EggNOG OGs1MHC6@121069,KOG1746@1,KOG1746@2759
EggNOG free text desc.Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit
GOsGO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009790,GO:0009792,GO:0009987,GO:0009991,GO:0010941,GO:0012505,GO:0016020,GO:0016021,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0031224,GO:0031667,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0042493,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0060548,GO:0065007,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
KEGG ModuleM00072
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG koko:K12668
Preferred nameDAD1
Seed eggNOG ortholog36331.EPrPI00000020409
Seed ortholog evalue2.1e-27
Seed ortholog score128.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17490.1prot_E-siliculosus-1a_M_contig95.17490.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 229385..230957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936514.7710881-CDS-E-siliculosus-1a_M_contig95:229384..2295211622936514.7710881-CDS-E-siliculosus-1a_M_contig95:229384..229521Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 229385..229521 -
1696251112.3022485-CDS-E-siliculosus-1a_M_contig95:229384..2295211696251112.3022485-CDS-E-siliculosus-1a_M_contig95:229384..229521Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 229385..229521 -
1622936514.7870224-CDS-E-siliculosus-1a_M_contig95:229910..2299981622936514.7870224-CDS-E-siliculosus-1a_M_contig95:229910..229998Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 229911..229998 -
1696251112.316328-CDS-E-siliculosus-1a_M_contig95:229910..2299981696251112.316328-CDS-E-siliculosus-1a_M_contig95:229910..229998Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 229911..229998 -
1622936514.8086667-CDS-E-siliculosus-1a_M_contig95:230783..2309571622936514.8086667-CDS-E-siliculosus-1a_M_contig95:230783..230957Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 230784..230957 -
1696251112.3261309-CDS-E-siliculosus-1a_M_contig95:230783..2309571696251112.3261309-CDS-E-siliculosus-1a_M_contig95:230783..230957Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 230784..230957 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936514.8242033-UTR-E-siliculosus-1a_M_contig95:230957..2310461622936514.8242033-UTR-E-siliculosus-1a_M_contig95:230957..231046Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 230958..231046 -
1696251112.3354983-UTR-E-siliculosus-1a_M_contig95:230957..2310461696251112.3354983-UTR-E-siliculosus-1a_M_contig95:230957..231046Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 230958..231046 -
1622936514.8381011-UTR-E-siliculosus-1a_M_contig95:231607..2321401622936514.8381011-UTR-E-siliculosus-1a_M_contig95:231607..232140Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 231608..232140 -
1696251112.3452537-UTR-E-siliculosus-1a_M_contig95:231607..2321401696251112.3452537-UTR-E-siliculosus-1a_M_contig95:231607..232140Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 231608..232140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17490.1

>prot_E-siliculosus-1a_M_contig95.17490.1 ID=prot_E-siliculosus-1a_M_contig95.17490.1|Name=mRNA_E-siliculosus-1a_M_contig95.17490.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=133bp
MGASTAGERGGREPAAGAMSAIGEVAKQLQSNYRETTPKRLRMLDMFLLF
VFATGVLQFVYCVLVGSFPFNSFLAGFSSTVGAFVLTVSLRMQVMEASDS
GGVVRGRSLERCFAEYVVCNMVLFLVVMNFMG*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig95:229385..232140-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17490.1 ID=mRNA_E-siliculosus-1a_M_contig95.17490.1|Name=mRNA_E-siliculosus-1a_M_contig95.17490.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2756bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:229385..232140- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCCGATCTTCGCCCCACTCTTCCTTACCTGTCTCCCGTGAATCTCCCGCT GGGCTGCCCACGGTAAGATCTCCTGTGTTTGTACCCATGTAGGTGAACTA ATAAAAACTCGTTGTTGTATTGCGAGCATTGCGTTTTGTAACACGGAAAA ACATCACATCTATCGCTATCCTTTGCTTGTTGGTACCAGCCGTTCCGGGC CGCGGCGGATGTTGATCGGATAAAACAACACGACACACACGGACGGTGCG GTGCCTGTGTATCGTGGATTCACGGTGGTTGTCCACGCTTCTTACCCCGA AGTGTCTGACGCGGATGAGTTGTATGTTTGATGGTGTGAGGCAGTACTGC TGTGTTCAGCAGTGCTTTCCCCAACTCCCATCGCCCCCACCGCACACGAG TTGCGCCGCTTCTTGAGCGGTATGTTGTCGAGCGCACGATCTGTTGCACA GGAGGGTTTTGGCAGTGACTTGGCCCCAATGAGCTGTCTGTGGAAAGTCC AAGGGCTCGGCACTGCTGACTCGTATCTAGAAGGTACTTCTCTATTCCAT ACAATCCAATTTTCCGTGAAAATCCAATCTTTCCGCTCAAGGCAGTACCG TTTCCCTCGTGACGTGGGGATTGTGTGTATGCCATGTGCCATTGGATGTG CGCTGGGCGTCGCAGCTGTCACTGTTGTCTGCGTCGTGAAAACAACACAT GTATGTATTTATTTGTGCTGATAGTTCTAAGGGCGTACAAGTCCTCAGCA GGAGTAGATAACGACCGTGATCACCACTGATCGTCGGTCCATCCGCTGGC GTCACCAGAAGAAGACCGTCCGCCGCTTCTGCTGTCTGCATGTGTACTGA CGGCGTTAGAGCCGCCGCCCAACGCTCCTCTCGGCACTGCCCCCCAGTGC ACGATCCTATTCTCCATATTCATTGTTTGCGCGGACAAGCAAGATGGCTC GTATGTACAAGAGTACGCTTGATCTCTCAACACGCTCCCGGTGCCGGCAC GACCTCGGCACGTAACCGCTTGCACTTTTTTCCTGTACCGAGGACAATAA ATCTTCCCTTTTCCTGCTTCATTCAACCATGGACACCTTTGCAGGACGCA ACTAAAGGAAGAGGGGGAAAGGGCACGCAGCTTCTTTCGCAGGGCGGGGT TTTGCACGAGAGACGAAGGGGGCGGTGAGGACGATGGGGGCATCGACCGC AGGGGAACGGGGCGGCCGCGAGCCCGCGGCAGGCGCGATGTCCGCGATCG GGGAGGTAGCCAAGCAGCTGCAGTCCAACTATCGGGAAACCACGCCCAAG AGGCTGCGGATGTTGGACATGTTTCTGCTCTTCGTGTTCGCGACTGGGGT GCTGCAGGTGCGGCGGGGGGGGGGTCGGCAGGCGGACATTGTCCCGAGGT TCGATAGGCAGAATACTCAGAAAAGTGCGGAGGGTCGGGAGGGCGCTCGC GCGGGGAGGGACACGGGCAGTTGATTTGCCAGTGGGCAACTCCATCCTTG TAGCAAACTACCGCATCTCGATTTGATGGGGTCCATCAACCGTGCTTCGT TTGTGAGAACCCGAGCACGTCCCATCTATTGGTGCGAACAAACCCTGCAA GTATGTACCGCCACGACGCGGGATCAGGTGCCCACCAGCTACAGACTACG TCGATGGGCGTGCTGTAGGCTACGCTGCTGTGCCCGCCCCTAAGCGCCAA GTTTGTTGGACGATGGATTGACTGCTGAGTCGCGGTGGAGGCTCGCGTAT TGCGCGTGTCGGTAAATACCTCACGACCACGTGCTAATCTAGAAGCGATA TTCCATAATACAATATTAATATTCTACATAAAGCACTTGCGGTGCAAGTT TTGACGGGCTAAAACTGCCCAGGGTCACCACTTTTCCGCACCACACCCAC CACTAGGCCATGCGTCGTCGTGTTCCCATGAGCGCCTCGGGGTTGCCGTC TTCGGATGGCGGCCGCTCTTGTGTGTGAGCACGTGTTGCCACGTTTCTTC ATCAAGCCGCACACGGAGTCCGCTGCGACGCTGTTCCGGTTTGGACACCT CTGTTGTGTCGTCTTTCAACTCTTCCTCAAGCCTCCCCTCCCCTCCCCTC CCCTCCCCTCCCCCATCCCCTCCCCTCCACGTGTTGCCGCAGTTCGTGTA TTGCGTGCTCGTGGGATCCTTCCCGTTCAACTCGTTTCTTGCCGGGTTCT CGTCAACGGTTGGGGCCTTCGTGTTGACAGGTTGGTTTCGTGTTCGTGTC GCTGCTGCTGCTGCGAAAAGGTCGGATCGTATGTAGCTGCCGACGCTACA ACGTATGTTGGGGTATGTACACGGCCGTGTGCTTGGGGGGCAAGGAAGCT ACATTCGTCACCGCGAGAAGCAAAAAAATGCTCTATTATTGTCTTGCTGC ATTCAGCAGCGAAGAAGATCGATTCCCTTTTTGCCTCGTTCCGATGTCGC TGCGGAGTTGTCTTCCCAGTTGCAATGCCCCCGTTCCCTTTCGGCTTTTG GGCTGGGCCGCTGGCCTGCCTTTGGCAACATGCGAACCCTCCTGTCATGA AGAACACGCAACGACTCTGCGGAACCATCACTTTTTGTGGATGCCCTCGC GCTTACGTTTCCCCCCAAGTTTCGTTGAGAATGCAGGTGATGGAAGCGAG CGATAGCGGGGGGGTCGTTCGGGGGCGGTCGCTGGAGCGATGCTTTGCGG AGTACGTGGTGTGCAACATGGTCCTCTTCTTGGTGGTGATGAACTTCATG GGGTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:229385..232140-

>mRNA_E-siliculosus-1a_M_contig95.17490.1 ID=mRNA_E-siliculosus-1a_M_contig95.17490.1|Name=mRNA_E-siliculosus-1a_M_contig95.17490.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=798bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:229385..232140- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGGCATCGACCGCAGGGGAACGGGGCGGCCGCGAGCCCGCGGCAGG
CGCGATGTCCGCGATCGGGGAGGTAGCCAAGCAGCTGCAGTCCAACTATC
GGGAAACCACGCCCAAGAGGCTGCGGATGTTGGACATGTTTCTGCTCTTC
GTGTTCGCGACTGGGGTGCTGCAGATGGGGGCATCGACCGCAGGGGAACG
GGGCGGCCGCGAGCCCGCGGCAGGCGCGATGTCCGCGATCGGGGAGGTAG
CCAAGCAGCTGCAGTCCAACTATCGGGAAACCACGCCCAAGAGGCTGCGG
ATGTTGGACATGTTTCTGCTCTTCGTGTTCGCGACTGGGGTGCTGCAGTT
CGTGTATTGCGTGCTCGTGGGATCCTTCCCGTTCAACTCGTTTCTTGCCG
GGTTCTCGTCAACGGTTGGGGCCTTCGTGTTGACAGTTCGTGTATTGCGT
GCTCGTGGGATCCTTCCCGTTCAACTCGTTTCTTGCCGGGTTCTCGTCAA
CGGTTGGGGCCTTCGTGTTGACAGTTTCGTTGAGAATGCAGGTGATGGAA
GCGAGCGATAGCGGGGGGGTCGTTCGGGGGCGGTCGCTGGAGCGATGCTT
TGCGGAGTACGTGGTGTGCAACATGGTCCTCTTCTTGGTGGTGATGAACT
TCATGGGGTGATTTCGTTGAGAATGCAGGTGATGGAAGCGAGCGATAGCG
GGGGGGTCGTTCGGGGGCGGTCGCTGGAGCGATGCTTTGCGGAGTACGTG
GTGTGCAACATGGTCCTCTTCTTGGTGGTGATGAACTTCATGGGGTGA
back to top