mRNA_E-siliculosus-1a_M_contig95.17480.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17480.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17480.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17480.1 vs. uniprot
Match: A0A6H5K9L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L3_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 7.020e-91
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 1 
Query:  130 MSDTNSLKETTRSLCRSSSGVRTSVEPPFMGRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR 558
            MSDTNSLKETTRSLC+ SS V TSVEPPFMGRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRW+VPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSA KMYALWSVGQQR
Sbjct:    1 MSDTNSLKETTRSLCQPSSRVHTSVEPPFMGRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWHVPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAKKMYALWSVGQQR 143
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17480.1 vs. uniprot
Match: D7G1S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S5_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 2.270e-74
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:  217 MGRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR 558
            MGR QPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFR HGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR
Sbjct:    1 MGRLQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRVHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR 114
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9L3_9PHAE7.020e-9195.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1S5_ECTSI2.270e-7498.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:165399..168423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size432
Model size1160
Exons4
Ec32 orthologEc-07_004330.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17480.1prot_E-siliculosus-1a_M_contig95.17480.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 165998..167889 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936513.316029-UTR-E-siliculosus-1a_M_contig95:165398..1659971622936513.316029-UTR-E-siliculosus-1a_M_contig95:165398..165997Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 165399..165997 -
1696251111.611273-UTR-E-siliculosus-1a_M_contig95:165398..1659971696251111.611273-UTR-E-siliculosus-1a_M_contig95:165398..165997Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 165399..165997 -
1622936513.3857744-UTR-E-siliculosus-1a_M_contig95:167889..1679931622936513.3857744-UTR-E-siliculosus-1a_M_contig95:167889..167993Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 167890..167993 -
1696251111.647399-UTR-E-siliculosus-1a_M_contig95:167889..1679931696251111.647399-UTR-E-siliculosus-1a_M_contig95:167889..167993Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 167890..167993 -
1622936513.402746-UTR-E-siliculosus-1a_M_contig95:168398..1684231622936513.402746-UTR-E-siliculosus-1a_M_contig95:168398..168423Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 168399..168423 -
1696251111.658046-UTR-E-siliculosus-1a_M_contig95:168398..1684231696251111.658046-UTR-E-siliculosus-1a_M_contig95:168398..168423Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 168399..168423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936513.3342588-CDS-E-siliculosus-1a_M_contig95:165997..1661401622936513.3342588-CDS-E-siliculosus-1a_M_contig95:165997..166140Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 165998..166140 -
1696251111.6191435-CDS-E-siliculosus-1a_M_contig95:165997..1661401696251111.6191435-CDS-E-siliculosus-1a_M_contig95:165997..166140Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 165998..166140 -
1622936513.3487918-CDS-E-siliculosus-1a_M_contig95:166725..1669231622936513.3487918-CDS-E-siliculosus-1a_M_contig95:166725..166923Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 166726..166923 -
1696251111.627431-CDS-E-siliculosus-1a_M_contig95:166725..1669231696251111.627431-CDS-E-siliculosus-1a_M_contig95:166725..166923Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 166726..166923 -
1622936513.3645039-CDS-E-siliculosus-1a_M_contig95:167798..1678891622936513.3645039-CDS-E-siliculosus-1a_M_contig95:167798..167889Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 167799..167889 -
1696251111.6369505-CDS-E-siliculosus-1a_M_contig95:167798..1678891696251111.6369505-CDS-E-siliculosus-1a_M_contig95:167798..167889Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 167799..167889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17480.1

>prot_E-siliculosus-1a_M_contig95.17480.1 ID=prot_E-siliculosus-1a_M_contig95.17480.1|Name=mRNA_E-siliculosus-1a_M_contig95.17480.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=144bp
MSDTNSLKETTRSLCRSSSGVRTSVEPPFMGRFQPTVVRQKPRPEVSFDK
GGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRAHGG
TPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR*
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mRNA from alignment at E-siliculosus-1a_M_contig95:165399..168423-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17480.1 ID=mRNA_E-siliculosus-1a_M_contig95.17480.1|Name=mRNA_E-siliculosus-1a_M_contig95.17480.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3025bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:165399..168423- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCAAGAGCGAACTCTGCGCCCAACGGTGAGACTACCACAGTATGCAGGCT
GCATTATGACTAGGTCGACATCGATTTGATATCGATCAGAGAGGGGGGCT
CTGGATGGCTGAACCCCTTTCGTGTTTTGTGTTGTTTGGTGAGCTGCAGG
GTGCGTCAGCAAGCGTCACACCCGTTTAGCGCGAACCGATAGACATCTCG
CCGCCATCCTTGCATCATCTACATCAATGTCGAGTTTGTCCGGCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGCTTCCTCCCTCCCTCC
CTTCCTCCTCTTTTCTCTCACTTTCCCTCCTCCCGTCCTCGTTCTCTCAG
CTTCCTGTTCCCTCCTTCCTACGCTACACAAGGTATACTTATCCCCTCTT
CCCATTGACACCACATTGCCTCTGACCAAGAGAGGTCGTTCAGCAGGTAC
CCAGCAAGTGTCGCGTCGTCAGAAAAACAACAGCATAAAGCTTGCAGGAG
AACGAACGTGGCGAACGACGCCCTATGCGAATCGATGTCTGACACCAACT
CGTTGAAGGAAACCACGCGGTCCTTGTGCCGCTCATCTTCCGGGGTGCGT
ACATCTGTCGAGCCTCCGTTTATGGGTGAGTGAGTGCCACCAGCAGTCTC
TACCCCGAGAGGCATGTTATGTACGCACCAGTCCAACGAAAAACTTGGCA
GGGCACAGCGTTGTGTTGTTCGACGCAACGTGTGGTGTAAGGGCGGTCTC
ATCAACCTGTTGATTGAACGCGGGATCGTGGCCGCCAATCGACCGCCCCT
CCGCCCACTCGCCAGTCTGAGGAAACCGCGGTATCGCGAAGAGGAGACGT
TAAAGAAACGGGGAATTCAAGCCGGGAAATAACATTCCTCATGTTGTAGT
CTACAGTTGTAGTTTTGATGATTTTTCAGAAAATGTAGAATACTCGGAGT
ACATCACAACCGCTGATGTTGCGATATCGCGTTGAAAGGATTATGTGCTG
GACCGAGTGAAAACACCGCACGCACGTAGCGATGCCCCCCTTCAAGGTTG
ATGGTTTAGCTTTCGAGATCGTCCGCAAGCCAACTCTTCATGACTGTTTT
GAACCATCGAGAAAATCGATTCATGCAATGATGTAACGACCTTCGACCCC
GACAGTGGGACGAATAAAGCCAACTCGTGGACTTCGAAGTTTGCCCTGAG
TGCGCAGTACCACACGCGTCACCGATTACCAAGAGTTGGACGGGGACACC
CGTAACCCCAATACACAAAACGTGGCCGACAATACATAGCCGTGTAGCAG
TTTTTTAGAACGGTAGGTGCGTGTGGGAACGGACATCCAAAGAGAGCGTC
AGCGACACGCCAAACCTCCCACGATCACGCACTCTTAAACGCATGTGCCC
TCTGCGGTCGATACACACACGCATTCATTCCTGTTTTCTCCCTGGAAAAC
TAATTCCACTCACTAAAGCCGAAAGTCCCGCTCGCGTATGCATACTACAG
GTCGCTTCCAGCCCACGGTCGTGCGTCAAAAGCCTCGTCCAGAGGTGTCC
TTCGACAAGGGAGGCAGCGACTTCCGCTGCCCAAGGACCTTCAGCTGCCT
GGGTCAGCAGGCCCTGTCGAGAGACGTCTATCGCTCGGCGGGGAGGCCGG
TGTTCACGAGGCAGGACAGGTGGTACGTGCCTGGCGACAAGTTCAGAGGT
GAGAGTAGGCTAGTGCCCTAATCCTAACCTCACACTAAAGTCTTTTTATT
TTTGGCCGTACTTCTTTAGGCTGAACGAGAACATGTTCGGGGAAAACACG
GGAGGCAGCTTCGGGTATCCTAGACAGCCTAGATAACGAGCTTCGCTTCA
CTTTGTCTGCTCCCTCTCAGGTAAAGCTAAGACTACATTTTTCTCACTCC
TTGTTGCTTGCTAGGTAGCCTGCAGCCAAAATCTGGGTTTAGGGCTGGGT
TACTAGCCAGGCAATCATGTTTCCACTCGGGATCTCATGCGTTGAATGAC
TCAGGTTCGTTTATCCTCAACTGCTGAAAAAATGGCGTCTCATTGAGTAC
AAGCGCTTTCGCAGACACAATCCGTTTCCCTTCCTTGCCATAACAATAGC
AATAATTTCCGCTGCGCAAATCTTACAACGATTTCCCCCACCAACGTTTA
CCCCACCAACGTTTTTCATTCTACCCCATCTATTTGCCCGCTCATCATCA
TCCGCCGCCCATGTGCTTCTTCCTACTCCACCCGCCCGTGCGTCTCCCAC
GAACTGCTGTCATTTTTCTCTTGTGTCCATCAGCGCACGGGGGAACGCCG
ATCTCGTCTCTGGGCAACCAGCCCACGTCCACCAGGACCTCGGCCGGTCG
GGCGCACTTCGGGACTTCCACCCGCAGCAGCGCCATGAAGATGTACGCGC
TCTGGTCTGTCGGGCAGCAACGATGACGGCGGCGTGTGTGTGTGCGTGGT
GTCATTTGTAATCGGTCGCATGACTGGAAGGGCAACTGTAGATAGGTATT
GGTGCACATCATGGCAGCTTGACAACCTTTAACAATGCCGGATTATGCCA
CTGCCGGCAGCAGGGAATAGTGGAGCAAGTACGAAGTCATGCATGTTGCA
AAATCGGATACATACGTGAGAGCCGGCTGCGTCGATGGTTGGTCGTTTGA
GACTTGTACTCGTGTGCTCGTGTACCACTTGAAAAGCACCAAAGGGCTTC
ATATCGCAGGGAGAGATCGCAACACTAGAGTGTCTTACCATGTAGGCGGT
GGATGCCAGGATATATTCATTTCTGTGATTTGGCCGGCCAACCAGCGGCT
ATGTCAATGGCGATGGGACGGCTACTGTGAAAAGTAGGAAAACACAAAGG
CTTAGTCTACTGAGCTTTTTTTTCTTGGGCGTTCTCGGCGTTTTGGTGTT
GCGTGAAGCGTCATCAAGGGCTAAATCTGCGGCCATTACCGGACGACAGT
GGCACGATGAATGCGGCGTCGCTGTTCTTGTATCCTCGAGCTAGTAATCC
CTGAGCCTGACGTCGTGAGAGAACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:165399..168423-

>mRNA_E-siliculosus-1a_M_contig95.17480.1 ID=mRNA_E-siliculosus-1a_M_contig95.17480.1|Name=mRNA_E-siliculosus-1a_M_contig95.17480.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:165399..168423- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTGACACCAACTCGTTGAAGGAAACCACGCGGTCCTTGTGCCGCTC
ATCTTCCGGGGTGCGTACATCTGTCGAGCCTCCGTTTATGGATGTCTGAC
ACCAACTCGTTGAAGGAAACCACGCGGTCCTTGTGCCGCTCATCTTCCGG
GGTGCGTACATCTGTCGAGCCTCCGTTTATGGGTCGCTTCCAGCCCACGG
TCGTGCGTCAAAAGCCTCGTCCAGAGGTGTCCTTCGACAAGGGAGGCAGC
GACTTCCGCTGCCCAAGGACCTTCAGCTGCCTGGGTCAGCAGGCCCTGTC
GAGAGACGTCTATCGCTCGGCGGGGAGGCCGGTGTTCACGAGGCAGGACA
GGTGGTACGTGCCTGGCGACAAGTTCAGAGGTCGCTTCCAGCCCACGGTC
GTGCGTCAAAAGCCTCGTCCAGAGGTGTCCTTCGACAAGGGAGGCAGCGA
CTTCCGCTGCCCAAGGACCTTCAGCTGCCTGGGTCAGCAGGCCCTGTCGA
GAGACGTCTATCGCTCGGCGGGGAGGCCGGTGTTCACGAGGCAGGACAGG
TGGTACGTGCCTGGCGACAAGTTCAGAGCGCACGGGGGAACGCCGATCTC
GTCTCTGGGCAACCAGCCCACGTCCACCAGGACCTCGGCCGGTCGGGCGC
ACTTCGGGACTTCCACCCGCAGCAGCGCCATGAAGATGTACGCGCTCTGG
TCTGTCGGGCAGCAACGATGACGCACGGGGGAACGCCGATCTCGTCTCTG
GGCAACCAGCCCACGTCCACCAGGACCTCGGCCGGTCGGGCGCACTTCGG
GACTTCCACCCGCAGCAGCGCCATGAAGATGTACGCGCTCTGGTCTGTCG
GGCAGCAACGATGA
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