mRNA_E-siliculosus-1a_M_contig95.17474.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17474.1 vs. uniprot
Match: A0A6H5KKG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG2_9PHAE) HSP 1 Score: 1029 bits (2660), Expect = 0.000e+0 Identity = 577/637 (90.58%), Postives = 596/637 (93.56%), Query Frame = 2
Query: 74 MHEVSMNRPRRVLLPGWANRRITFGLTLVLVTCVTRSRSLPPVAFVAGAVSRACRINGSSGTSRSHGGDSSRQLLVGEERLWWKCLPVFCDQGKPRSICARATASHKGGGHGDVEGAEEGEGQGGPREGKQGRVGNQERARASSVGAVVNVGGATGGGTQVKGEGGKRKRARLTAAEKAQQKAYRGRRIKDTVDLMETLMNSEVDLEDVLRQHSSTATDAEGFLKEERLVGEIARPVVARIRRRYRTRIAALRRQAARRLAEQDPSTRRPERRKRKAKPFPTTAKEIDDFLLSYKVTVWDAIRSYEVITAGEKIRRQKIALSIADPVQWEANRMQELERKRAMQKDPEELREERRLRAIRRYETRRRNGNSGKGKPRSKADQRKAEELAAARAAAIAAGLATEADFAPPAPRRVFKKDIPTVKRRRGRPRKILTEEEKVARALRQANGPLPRGRQRDLTGPPLPALDAPCHVTAAVTENVREWMAAAAAEAAAAAMSNGVRSVTAADLEAHAKALAVSKTKEVTGGGGRXGGGVWTAGMTRIALAGMEAWHDKWREVYPDAVTGPGTSSSGAAGKEQGEKKPPLPCPAHGRGGDERDAGEGEEEVEGRVGGRAGXXXXXXXXXXXXPARGDGARAEI 1984
MHEVSMNRPRRVLLPGW NRRIT GL LV VTCVTRSRSLPPVAFVAGAVSR C INGSSGTSRS+GGDSS QLLVG+ERLW K LPVFCDQGKPRSIC+RAT S +GGGHGD EGAEEGEGQ GPR+GKQGRV NQER RA SVGA V VGG TGGGTQVKGEGGK KRARLTAAEKAQQKA+RGRRI+DTVDLMETLMNSEVDL+DVLRQ+SSTATDAEG LKEERLVGEIARPVVARIRR YRTRIAALRRQAARRLAE DPSTRRPERRKRK KPFPTTAKEIDDFLLSYKVTVWDAIRSYEVIT GEKIRRQKIALSI DPVQWEANRM+ELERKRAMQKDP+ELREERRLRAIRRYETRRRNGNSGKGKPRSKADQRKAEELAAARAAAIA GLATEADFAPPAPRRVFKKDIPTVKRRRGRPRK+LTEEEK+ARALRQANGPLPRGRQRDLTGPPLP LDAPCHVTAAVTENVREWMAAAAAEAAAAAMSNGVRSVTAADLEAHAKALAVSKTKEVTGGGGRXGGGVWTAGMTRIALAG+EAW DKWRE+YPDAVTGPGTSSSGAAG+EQG K PLPC AHG GGDERDAGEGE+EVE RV GRAG XXXXXXX P+RGDGARAE+
Sbjct: 1 MHEVSMNRPRRVLLPGWPNRRITLGLALVWVTCVTRSRSLPPVAFVAGAVSRGCCINGSSGTSRSNGGDSSGQLLVGDERLWLKFLPVFCDQGKPRSICSRATTSQEGGGHGDTEGAEEGEGQRGPRDGKQGRVRNQERERAPSVGAAVYVGGDTGGGTQVKGEGGKSKRARLTAAEKAQQKAFRGRRIEDTVDLMETLMNSEVDLQDVLRQYSSTATDAEGLLKEERLVGEIARPVVARIRR-YRTRIAALRRQAARRLAEHDPSTRRPERRKRKVKPFPTTAKEIDDFLLSYKVTVWDAIRSYEVITTGEKIRRQKIALSITDPVQWEANRMEELERKRAMQKDPDELREERRLRAIRRYETRRRNGNSGKGKPRSKADQRKAEELAAARAAAIATGLATEADFAPPAPRRVFKKDIPTVKRRRGRPRKVLTEEEKMARALRQANGPLPRGRQRDLTGPPLP-LDAPCHVTAAVTENVREWMAAAAAEAAAAAMSNGVRSVTAADLEAHAKALAVSKTKEVTGGGGRXGGGVWTAGMTRIALAGIEAWKDKWREIYPDAVTGPGTSSSGAAGEEQGGNKSPLPCLAHGSGGDERDAGEGEKEVESRVVGRAGGSXXXXXXXA--PSRGDGARAEM 633
BLAST of mRNA_E-siliculosus-1a_M_contig95.17474.1 vs. uniprot
Match: D7G140_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G140_ECTSI) HSP 1 Score: 1025 bits (2651), Expect = 0.000e+0 Identity = 579/637 (90.89%), Postives = 592/637 (92.94%), Query Frame = 2
Query: 74 MHEVSMNRPRRVLLPGWANRRITFGLTLVLVTCVTRSRSLPPVAFVAGAVSRACRINGSSGTSRSHGGDSSRQLLVGEERLWWKCLPVFCDQGKPRSICARATASHKGGGHGDVEGAEEGEGQGGPREGKQGRVGNQERARASSVGAVVNVGGATGGGTQVKGEGGKRKRARLTAAEKAQQKAYRGRRIKDTVDLMETLMNSEVDLEDVLRQHSSTATDAEGFLKEERLVGEIARPVVARIRRRYRTRIAALRRQAARRLAEQDPSTRRPERRKRKAKPFPTTAKEIDDFLLSYKVTVWDAIRSYEVITAGEKIRRQKIALSIADPVQWEANRMQELERKRAMQKDPEELREERRLRAIRRYETRRRNGNSGKGKPRSKADQRKAEELAAARAAAIAAGLATEADFAPPAPRRVFKKDIPTVKRRRGRPRKILTEEEKVARALRQANGPLPRGRQRDLTGPPLPALDAPCHVTAAVTENVREWMAAAAAEAAAAAMSNGVRSVTAADLEAHAKALAVSKTKEVTGGGGRXGGGVWTAGMTRIALAGMEAWHDKWREVYPDAVTGPGTSSSGAAGKEQGEKKPPLPCPAHGRGGDERDAGEGEEEVEGRVGGRAGXXXXXXXXXXXXPARGDGARAEI 1984
MHE SMNRPR VLLPGWANRRITFGL LVLVTCVTRSRSLPPVAFVAGAVSRAC INGSSGTSRS+ GDSSRQLLVGEE LWWKCLPVF DQGKPRSICARAT SHKGGGHGDVEGAEEGEGQGGPREGKQGRVGNQERARASSVGAVVNV G TGGGTQVKGEGGKRKRARLTAAEKAQQKAYRGRRIKDT DLMETLMNSEVDL+DVLR+HSSTATDAEGFLKEERLVGEIARPVVARIRR YRTRIAALRRQAARRLAEQ PST+RPERRKRKAKPFPTTAKEIDDFLLSYKVTVWDAIR I DPVQWEANRM+ELERKRAMQKDPEEL+EERRLRAIRRYE RRRNGNSGKGKPRSKADQRKAEELAAARAAAIAAGLATEADFAPPAPRR+FKKDIPTVKRRRGRPRK+LTEEEK+ARALRQANGPLPRGRQRDLTGPP P LDAPCHVTAAVTENVREWMAAAAAEAAAAAMSNGVRSVTAADLEAHAKALAVSKTKEVTGGGGR GGGVW+AGMTRIALAGMEAWHDKWREVYPDAVTGPGTSSSGAAG+E GEKKPPLPCPAHGRGGDER+AGEGEEEVEGR R XXXXXXXXXXX ARGDGARAE+
Sbjct: 1 MHEFSMNRPRMVLLPGWANRRITFGLALVLVTCVTRSRSLPPVAFVAGAVSRACCINGSSGTSRSNCGDSSRQLLVGEEILWWKCLPVFRDQGKPRSICARATTSHKGGGHGDVEGAEEGEGQGGPREGKQGRVGNQERARASSVGAVVNVSGVTGGGTQVKGEGGKRKRARLTAAEKAQQKAYRGRRIKDTADLMETLMNSEVDLQDVLRKHSSTATDAEGFLKEERLVGEIARPVVARIRR-YRTRIAALRRQAARRLAEQYPSTKRPERRKRKAKPFPTTAKEIDDFLLSYKVTVWDAIR-------------------ITDPVQWEANRMEELERKRAMQKDPEELQEERRLRAIRRYEARRRNGNSGKGKPRSKADQRKAEELAAARAAAIAAGLATEADFAPPAPRRIFKKDIPTVKRRRGRPRKVLTEEEKMARALRQANGPLPRGRQRDLTGPPPPPLDAPCHVTAAVTENVREWMAAAAAEAAAAAMSNGVRSVTAADLEAHAKALAVSKTKEVTGGGGRGGGGVWSAGMTRIALAGMEAWHDKWREVYPDAVTGPGTSSSGAAGEEHGEKKPPLPCPAHGRGGDERNAGEGEEEVEGRAVARX--XXXXXXXXXXXXARGDGARAEM 615 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17474.1 >prot_E-siliculosus-1a_M_contig95.17474.1 ID=prot_E-siliculosus-1a_M_contig95.17474.1|Name=mRNA_E-siliculosus-1a_M_contig95.17474.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=638bp MHEVSMNRPRRVLLPGWANRRITFGLTLVLVTCVTRSRSLPPVAFVAGAVback to top mRNA from alignment at E-siliculosus-1a_M_contig95:69829..75178- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17474.1 ID=mRNA_E-siliculosus-1a_M_contig95.17474.1|Name=mRNA_E-siliculosus-1a_M_contig95.17474.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5350bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:69829..75178- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:69829..75178- >mRNA_E-siliculosus-1a_M_contig95.17474.1 ID=mRNA_E-siliculosus-1a_M_contig95.17474.1|Name=mRNA_E-siliculosus-1a_M_contig95.17474.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3828bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:69829..75178- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |