mRNA_E-siliculosus-1a_M_contig95.17470.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17470.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17470.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17470.1 vs. uniprot
Match: D7G8M0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M0_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 3.160e-58
Identity = 104/119 (87.39%), Postives = 107/119 (89.92%), Query Frame = 3 
Query:  363 VEPAAGSLRDTWDTNSWACMVARASAPSWELSSSEKVVAAAATTAVTHLDHPSETGRGSRTAPRPPTARDVSTLPENPKRTVAGMPLEKWAVRGRQGSGAEVRAGPGLCLVLTWKSCLP 719
            VEPAAGSLRDT DTNSWACM ARASAPSWELSSSEK + AAATTAVTHLDHPSETGRGSRT PRP TARDVSTLPE+ KR VAGMPLEK A RGRQGSG  +RAGPGLCLVLTWKSCLP
Sbjct:  387 VEPAAGSLRDTRDTNSWACMAARASAPSWELSSSEKAMEAAATTAVTHLDHPSETGRGSRTTPRPQTARDVSTLPEHQKRKVAGMPLEKRAARGRQGSGTGIRAGPGLCLVLTWKSCLP 505
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8M0_ECTSI3.160e-5887.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:42791..44345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size303
Model size931
Exons3
Ec32 orthologEc-00_010990.1
Ec32 ortholog descriptionRmlC-like jelly roll fold
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17470.1prot_E-siliculosus-1a_M_contig95.17470.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 43834..44136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936510.1394439-UTR-E-siliculosus-1a_M_contig95:42790..428531622936510.1394439-UTR-E-siliculosus-1a_M_contig95:42790..42853Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 42791..42853 +
1696251110.5460374-UTR-E-siliculosus-1a_M_contig95:42790..428531696251110.5460374-UTR-E-siliculosus-1a_M_contig95:42790..42853Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 42791..42853 +
1622936510.166509-UTR-E-siliculosus-1a_M_contig95:43078..433771622936510.166509-UTR-E-siliculosus-1a_M_contig95:43078..43377Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 43079..43377 +
1696251110.5565448-UTR-E-siliculosus-1a_M_contig95:43078..433771696251110.5565448-UTR-E-siliculosus-1a_M_contig95:43078..43377Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 43079..43377 +
1622936510.1896455-UTR-E-siliculosus-1a_M_contig95:43776..438331622936510.1896455-UTR-E-siliculosus-1a_M_contig95:43776..43833Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 43777..43833 +
1696251110.5666494-UTR-E-siliculosus-1a_M_contig95:43776..438331696251110.5666494-UTR-E-siliculosus-1a_M_contig95:43776..43833Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 43777..43833 +
1622936510.2198012-UTR-E-siliculosus-1a_M_contig95:44136..443451622936510.2198012-UTR-E-siliculosus-1a_M_contig95:44136..44345Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 44137..44345 +
1696251110.5869594-UTR-E-siliculosus-1a_M_contig95:44136..443451696251110.5869594-UTR-E-siliculosus-1a_M_contig95:44136..44345Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 44137..44345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936510.2057486-CDS-E-siliculosus-1a_M_contig95:43833..441361622936510.2057486-CDS-E-siliculosus-1a_M_contig95:43833..44136Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 43834..44136 +
1696251110.5767155-CDS-E-siliculosus-1a_M_contig95:43833..441361696251110.5767155-CDS-E-siliculosus-1a_M_contig95:43833..44136Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 43834..44136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17470.1

>prot_E-siliculosus-1a_M_contig95.17470.1 ID=prot_E-siliculosus-1a_M_contig95.17470.1|Name=mRNA_E-siliculosus-1a_M_contig95.17470.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=101bp
MVARASAPSWELSSSEKVVAAAATTAVTHLDHPSETGRGSRTAPRPPTAR
DVSTLPENPKRTVAGMPLEKWAVRGRQGSGAEVRAGPGLCLVLTWKSCLP
*
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mRNA from alignment at E-siliculosus-1a_M_contig95:42791..44345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17470.1 ID=mRNA_E-siliculosus-1a_M_contig95.17470.1|Name=mRNA_E-siliculosus-1a_M_contig95.17470.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1555bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:42791..44345+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CAAATCACTCGCGGGGCTGAGCGTCGCATCTGGGGACAGCATGCAGTACA
GCGTGGACTCCGGGTGAGGATTTCGTCGAGTGATTGGCATGCGCTGTACG
CGCGTAGTACAGAATATTTCCTTCCCGTGCATTTCGATCACACTTGAGTG
CCCACCGTATACTGAAGTACATGACGTCCAATGTTCCTTCGGCTTGACAT
CCAATGTTCCCGCAACTTCTGGTCATGAACAATCGTTGGGAATCGTAAAT
CGGACATTTTCATCACGTGAATACCTATTTCGTATTAGGTGGCTCCCAAC
TGTAGCGGGAATGGGGAACAACTCTCCCCCAGGCCGCGATGGTTCTGGCA
CTCATGCAGAATCCCAAGGCCTCGATGATGACCCCGACGCACAACAACCG
CAGCAAGGAGACCGGCCGCAAGGCCATCAACCTTACGGTTTGAACTCGGG
GGTCGAGAACGCCAAGCCCTCCGGAGTCCTGGCGGGTTCCGTGTCCCTTC
CAAACCTGGGACTACCCGCGGGTTTGGGGGATGAGAGTGCTGCCGGGAGA
GGGCCGCCTTTCCTGGGCATTGGGGTAAAAGGAGCTGGTGAGAACACCGG
TTGTCATTTCCAAGACTGTTGAGTTACTTCTTCCCCCCCAACGCAAGGGG
CGGTGCGATTAGCGTTCTCCACGCCCGGAAATCAAGAGTTTCCATGGAAC
GATCACGGAACCGATGGACAAACCGCGGCATGATTCCGTACGTGAAACTG
ACAAAATGTCACCTACAAATTCTCTCGAACCCGTTCCAAAAACACACAAC
AAACACAGGCACGTGTATGTGTATGTCGTTTACATCACACGATGCCACAA
CCCAACATTTCTCTTGACTCAACGAACGAACGCTGTGTACAAAGCATCAA
CAAATGCGTCGGAGCGGATCCACAATTCCGTGGAACCCAACACAACCCAC
AACCCCACACAACACTACAACAACCGCAACGCCCAGGTGGAACCCGCCGC
GGGAAGCCTGCGCGATACATGGGACACAAACAGCTGGGCTTGCATGGTAG
CAAGAGCTTCGGCGCCTTCTTGGGAGCTATCGAGCAGCGAGAAGGTGGTG
GCAGCAGCAGCAACGACAGCGGTTACCCACCTCGACCACCCTTCCGAAAC
AGGAAGAGGCTCAAGAACGGCGCCGAGACCTCCGACAGCAAGAGACGTTT
CCACGCTGCCCGAGAACCCGAAACGCACTGTCGCGGGGATGCCACTCGAA
AAGTGGGCGGTGCGCGGAAGGCAAGGGTCGGGGGCGGAGGTCAGGGCGGG
GCCGGGCCTGTGCCTCGTTCTGACGTGGAAGTCGTGCCTGCCGTGAAGGG
TGTGGAACTTATTCCTGTTAGAGGGATCAGTCGAATATGTGCGAGTTAGT
GACACGCGGGGTATCTATCAACATTGGCCTATCTGGGAAGGCTTAGCTAC
CTCAATGTTGACCTGAGGCCTGAGGTCGAAAGCTCGATCATGGTTGTAGA
CTGTAGTTGACAGAGGGAGCACCACAGCCAGCCACTATACTTCATGGATT
CGCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:42791..44345+

>mRNA_E-siliculosus-1a_M_contig95.17470.1 ID=mRNA_E-siliculosus-1a_M_contig95.17470.1|Name=mRNA_E-siliculosus-1a_M_contig95.17470.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:42791..44345+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTAGCAAGAGCTTCGGCGCCTTCTTGGGAGCTATCGAGCAGCGAGAA
GGTGGTGGCAGCAGCAGCAACGACAGCGGTTACCCACCTCGACCACCCTT
CCGAAACAGGAAGAGGCTCAAGAACGGCGCCGAGACCTCCGACAGCAAGA
GACGTTTCCACGCTGCCCGAGAACCCGAAACGCACTGTCGCGGGGATGCC
ACTCGAAAAGTGGGCGGTGCGCGGAAGGCAAGGGTCGGGGGCGGAGGTCA
GGGCGGGGCCGGGCCTGTGCCTCGTTCTGACGTGGAAGTCGTGCCTGCCG
TGAATGGTAGCAAGAGCTTCGGCGCCTTCTTGGGAGCTATCGAGCAGCGA
GAAGGTGGTGGCAGCAGCAGCAACGACAGCGGTTACCCACCTCGACCACC
CTTCCGAAACAGGAAGAGGCTCAAGAACGGCGCCGAGACCTCCGACAGCA
AGAGACGTTTCCACGCTGCCCGAGAACCCGAAACGCACTGTCGCGGGGAT
GCCACTCGAAAAGTGGGCGGTGCGCGGAAGGCAAGGGTCGGGGGCGGAGG
TCAGGGCGGGGCCGGGCCTGTGCCTCGTTCTGACGTGGAAGTCGTGCCTG
CCGTGA
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