mRNA_E-siliculosus-1a_M_contig95.17507.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17507.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17507.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.660e-37
Identity = 71/102 (69.61%), Postives = 82/102 (80.39%), Query Frame = -2 
Query:    2 KTAMVVSSMNADRSAGAAVEHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 307
            + ++   S +ADR   AAV H   +  H VLIV+AC+ L   MYDVSGLKCLL+SRDDLV++AV NDMIL+AVNKSRYVEDWYADTGTAFHMTDSLACMKDL
Sbjct:  151 QNSIAALSEDADRKLDAAVMHAYFARSHKVLIVSACEWLTSMMYDVSGLKCLLTSRDDLVMSAVSNDMILNAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 252
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 4.200e-37
Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = -2 
Query:    2 KTAMVVSSMNADRSAGAAVEHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 307
            + ++   S +ADR   AAV H   +  H V IV+AC+ L   MYDVSGLKCLL+SRDDLV++AV NDMIL+AVNKSRYVEDWYADTGTAFHMTDSLACMKDL
Sbjct:  444 QNSIAALSEDADRKLDAAVMHAYFARSHKVFIVSACEWLTNMMYDVSGLKCLLTSRDDLVMSAVSNDMILNAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 545
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5K3U2_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U2_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.450e-32
Identity = 59/83 (71.08%), Postives = 70/83 (84.34%), Query Frame = -2 
Query:    2 EHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 250
            + DL     +++I+TA D+L   MYDVSGLKCL++SRDDLV+ AV +DMIL AVNKSRYVEDWYADTGTAFHMTDSL+CMKDL
Sbjct:  167 DDDLFIAYSELVILTAFDQLSSMMYDVSGLKCLMTSRDDLVMRAVSDDMILKAVNKSRYVEDWYADTGTAFHMTDSLSCMKDL 249
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5KTY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY9_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.480e-31
Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = -2 
Query:    2 EHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 250
            + DL     +++I+TA D+L   MYDVSGLK L++SR+DLV+ A+ +DMIL AVNKSRYVEDWYADTGTAFHMTDSL+CMKDL
Sbjct:   51 DDDLFIAYSELVILTAFDQLSSMMYDVSGLKFLMTSREDLVMRAISDDMILKAVNKSRYVEDWYADTGTAFHMTDSLSCMKDL 133
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.800e-30
Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = -2 
Query:    2 EHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 250
            + DL     +++I++A D+L   MYDVSGLKCL++SRDDLV+ AV +DMIL AVNKSRYVEDWYADTGTAFHMTDSL+CMKDL
Sbjct:   51 DDDLFIAYSELVILSAFDQLSSMMYDVSGLKCLMTSRDDLVMRAVSDDMILKAVNKSRYVEDWYADTGTAFHMTDSLSCMKDL 133
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.120e-8
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = -2 
Query:    2 LLVRCGRLRWLGGFCSNL*RKTAMVVSSMNADRSAGAAVEHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 367
            LL +     W GG         AM    M   + +  +  +D +   HD + + A   L     D   LK  + S D +V +++R    L+   K R +EDWYADTGTAFHMTDSL+CMKD+
Sbjct:  219 LLSQANSSEWSGGKYI-----AAMYAKIMQKWQESRGSSRNDAVLEHHDTMYLEA---LYTEAED--ELKKYVGS-DRVVRDSIREHSTLT--KKDRCIEDWYADTGTAFHMTDSLSCMKDV 327
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.150e-8
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = -2 
Query:    2 LLVRCGRLRWLGGFCSNL*RKTAMVVSSMNADRSAGAAVEHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 367
            LL +     W GG         AM    M   + +  +  +D +   HD + + A   L     D   LK  + S D +V +++R    L+   K R +EDWYADTGTAFHMTDSL+CMKD+
Sbjct:  219 LLSQANSSEWSGGKYI-----AAMYAKIMQKWQESRGSSRNDAVLEHHDTMYLEA---LYTEAED--ELKKYVGS-DRVVRDSIREHSTLT--KKDRCIEDWYADTGTAFHMTDSLSCMKDV 327
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.920e-8
Identity = 44/122 (36.07%), Postives = 59/122 (48.36%), Query Frame = -2 
Query:    2 LLVRCGRLRWLGGFCSNL*RKTAMVVSSMNADRSAGAAVEHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 367
            LL +     W GG         AM    M        +  +D +   HD + + A   L     D   LK  + S D +V +++R    L+   K R +EDWYADTGTAFHMTDSL+CMKD+
Sbjct:  202 LLSQANSSEWSGGKYI-----AAMYAKIMQKWHECRGSSRNDAVLEHHDTMYLEA---LYTEAED--ELKKYVGS-DRVVRDSIREHSTLT--KKDRCIEDWYADTGTAFHMTDSLSCMKDV 310
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5KAX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAX9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 9.280e-8
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = -2 
Query:    2 YDVSGLKCLLSSRDDLVLNAVRNDMIL--------SAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 178
            +D   L+ L +  +D +   V +D ++        +   K R +EDWYADTGTAFHMTDSL+CMKD+
Sbjct:  334 HDTMYLEALYTEAEDELKKYVGSDRVVRDSIHEHSTLKKKDRCIEDWYADTGTAFHMTDSLSCMKDV 400
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.800e-7
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = -2 
Query:    2 YDVSGLKCLLSSRDDLVLNAVRNDMIL--------SAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 178
            +D   L+ L +  +D +   V +D ++        +   K R +EDWYADTGTAF+MTDSL+CMKD+
Sbjct:  206 HDTMYLEALYTEAEDELKKYVGSDRVVRDSLREHSTLTKKDRCIEDWYADTGTAFNMTDSLSCMKDV 272
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KZH7_9PHAE1.660e-3769.61Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA7_9PHAE4.200e-3768.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3U2_9PHAE1.450e-3271.08CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KTY9_9PHAE2.480e-3167.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE1.800e-3069.88Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KHE8_9PHAE2.120e-836.07CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE2.150e-836.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDZ0_9PHAE3.920e-836.07CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAX9_9PHAE9.280e-843.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE4.800e-741.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:395639..396015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size366
Model size379
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936509.2703958-UTR-E-siliculosus-1a_M_contig95:395638..3956491622936509.2703958-UTR-E-siliculosus-1a_M_contig95:395638..395649Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 395639..395649 +
1696251110.093175-UTR-E-siliculosus-1a_M_contig95:395638..3956491696251110.093175-UTR-E-siliculosus-1a_M_contig95:395638..395649Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 395639..395649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936509.29073-CDS-E-siliculosus-1a_M_contig95:395649..3960151622936509.29073-CDS-E-siliculosus-1a_M_contig95:395649..396015Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 395650..396015 +
1696251110.103901-CDS-E-siliculosus-1a_M_contig95:395649..3960151696251110.103901-CDS-E-siliculosus-1a_M_contig95:395649..396015Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 395650..396015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17507.1prot_E-siliculosus-1a_M_contig95.17507.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 395650..396015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17507.1

>prot_E-siliculosus-1a_M_contig95.17507.1 ID=prot_E-siliculosus-1a_M_contig95.17507.1|Name=mRNA_E-siliculosus-1a_M_contig95.17507.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=122bp
MQARESVMWKAVPVSAYQSSTYLDLLTALRIMSFLTAFNTRSSRDDSRHF
RPETSYIDRCNLSQAVTINTSWRWDRRSCSTAAPAERSAFIDDTTIAVFL
QRFEQKPPSHLSLPHLTNSVSL
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mRNA from alignment at E-siliculosus-1a_M_contig95:395639..396015+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17507.1 ID=mRNA_E-siliculosus-1a_M_contig95.17507.1|Name=mRNA_E-siliculosus-1a_M_contig95.17507.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=377bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:395639..396015+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCAAGTCCTTCATGCAAGCGAGAGAGTCGGTCATGTGGAAAGCAGTACCA
GTGTCAGCATACCAATCCTCGACGTATCTAGACTTGTTGACAGCGCTCAG
GATCATGTCATTCCTCACAGCATTCAACACCAGATCATCCCGTGACGACA
GCAGACACTTCAGACCAGAAACATCATACATAGACCGTTGCAACTTGTCA
CAAGCTGTCACAATCAATACATCATGGAGATGGGACAGAAGGTCATGCTC
AACAGCAGCACCAGCAGAACGATCAGCATTCATAGATGACACAACCATCG
CTGTCTTTCTTCAAAGATTCGAACAAAAACCACCAAGCCATCTCAGTCTG
CCGCACCTGACCAACAGTGTATCCCTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:395639..396015+

>mRNA_E-siliculosus-1a_M_contig95.17507.1 ID=mRNA_E-siliculosus-1a_M_contig95.17507.1|Name=mRNA_E-siliculosus-1a_M_contig95.17507.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=732bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:395639..396015+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAAGCGAGAGAGTCGGTCATGTGGAAAGCAGTACCAGTGTCAGCATA
CCAATCCTCGACGTATCTAGACTTGTTGACAGCGCTCAGGATCATGTCAT
TCCTCACAGCATTCAACACCAGATCATCCCGTGACGACAGCAGACACTTC
AGACCAGAAACATCATACATAGACCGTTGCAACTTGTCACAAGCTGTCAC
AATCAATACATCATGGAGATGGGACAGAAGGTCATGCTCAACAGCAGCAC
CAGCAGAACGATCAGCATTCATAGATGACACAACCATCGCTGTCTTTCTT
CAAAGATTCGAACAAAAACCACCAAGCCATCTCAGTCTGCCGCACCTGAC
CAACAGTGTATCCCTTATGCAAGCGAGAGAGTCGGTCATGTGGAAAGCAG
TACCAGTGTCAGCATACCAATCCTCGACGTATCTAGACTTGTTGACAGCG
CTCAGGATCATGTCATTCCTCACAGCATTCAACACCAGATCATCCCGTGA
CGACAGCAGACACTTCAGACCAGAAACATCATACATAGACCGTTGCAACT
TGTCACAAGCTGTCACAATCAATACATCATGGAGATGGGACAGAAGGTCA
TGCTCAACAGCAGCACCAGCAGAACGATCAGCATTCATAGATGACACAAC
CATCGCTGTCTTTCTTCAAAGATTCGAACAAAAACCACCAAGCCATCTCA
GTCTGCCGCACCTGACCAACAGTGTATCCCTT
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