mRNA_E-siliculosus-1a_M_contig95.17503.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17503.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17503.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:357789..358508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size546
Model size720
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17503.1prot_E-siliculosus-1a_M_contig95.17503.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 357879..358424 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936509.1609526-UTR-E-siliculosus-1a_M_contig95:357788..3578781622936509.1609526-UTR-E-siliculosus-1a_M_contig95:357788..357878Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 357789..357878 +
1696251110.0604873-UTR-E-siliculosus-1a_M_contig95:357788..3578781696251110.0604873-UTR-E-siliculosus-1a_M_contig95:357788..357878Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 357789..357878 +
1622936509.2312388-UTR-E-siliculosus-1a_M_contig95:358424..3585081622936509.2312388-UTR-E-siliculosus-1a_M_contig95:358424..358508Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 358425..358508 +
1696251110.0830474-UTR-E-siliculosus-1a_M_contig95:358424..3585081696251110.0830474-UTR-E-siliculosus-1a_M_contig95:358424..358508Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 358425..358508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936509.2150676-CDS-E-siliculosus-1a_M_contig95:357878..3584241622936509.2150676-CDS-E-siliculosus-1a_M_contig95:357878..358424Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 357879..358424 +
1696251110.07205-CDS-E-siliculosus-1a_M_contig95:357878..3584241696251110.07205-CDS-E-siliculosus-1a_M_contig95:357878..358424Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 357879..358424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17503.1

>prot_E-siliculosus-1a_M_contig95.17503.1 ID=prot_E-siliculosus-1a_M_contig95.17503.1|Name=mRNA_E-siliculosus-1a_M_contig95.17503.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=182bp
MEKYGKEGRGQRKTVWCFSLTRRPGDNIEWGTDDLSRQSGGYRCTQYRRG
GRTNQRGEQEGTLIVEDKTPICVCDTFSLNNGTVPIPTIRGRYISTTRRG
TGRTTQREPEWRAGRNLLGGATISLTREQATPIKSHFLCAQIRFFDVGQP
VKFIIVYANESKACTHTHNTQALQRNDTIHI*
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mRNA from alignment at E-siliculosus-1a_M_contig95:357789..358508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17503.1 ID=mRNA_E-siliculosus-1a_M_contig95.17503.1|Name=mRNA_E-siliculosus-1a_M_contig95.17503.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=720bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:357789..358508+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GACGAGACAACAAGACGGAGTGGGGACAATAAAGATAAGAAAAAAACCCC
GAAAGAAACGGGACCAAGGGGTAGGGAGAATACACTGGAGATGGAGAAAT
ACGGCAAGGAGGGCAGAGGCCAAAGAAAAACAGTGTGGTGCTTTTCCCTC
ACCAGGAGACCGGGAGATAACATAGAGTGGGGCACGGACGATTTAAGCAG
ACAAAGCGGGGGGTATCGATGCACGCAGTACAGGCGTGGCGGCAGAACCA
ACCAGAGGGGAGAACAAGAAGGGACTCTTATCGTAGAAGACAAGACACCT
ATTTGCGTATGTGACACATTTTCACTGAACAACGGTACCGTTCCAATACC
AACAATAAGGGGACGATATATCTCCACAACAAGGCGAGGCACAGGCAGAA
CGACGCAGAGAGAGCCAGAGTGGCGCGCCGGGCGGAACCTACTGGGGGGT
GCGACCATTTCTCTGACACGAGAACAAGCAACACCAATAAAATCCCATTT
CCTGTGCGCACAAATCCGCTTCTTCGACGTCGGTCAGCCGGTGAAATTTA
TCATTGTGTATGCCAACGAAAGCAAAGCATGCACGCACACACACAACACG
CAAGCTCTTCAGAGGAACGATACAATCCATATATAACATACCTCGGTTTC
ATCGGCCGGTGCGTCGGCGGCCTGAGACTTCTCCTCCAGCGCAGACATTG
TGATGTAAAAATGTGATGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:357789..358508+

>mRNA_E-siliculosus-1a_M_contig95.17503.1 ID=mRNA_E-siliculosus-1a_M_contig95.17503.1|Name=mRNA_E-siliculosus-1a_M_contig95.17503.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1092bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:357789..358508+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGAAATACGGCAAGGAGGGCAGAGGCCAAAGAAAAACAGTGTGGTG
CTTTTCCCTCACCAGGAGACCGGGAGATAACATAGAGTGGGGCACGGACG
ATTTAAGCAGACAAAGCGGGGGGTATCGATGCACGCAGTACAGGCGTGGC
GGCAGAACCAACCAGAGGGGAGAACAAGAAGGGACTCTTATCGTAGAAGA
CAAGACACCTATTTGCGTATGTGACACATTTTCACTGAACAACGGTACCG
TTCCAATACCAACAATAAGGGGACGATATATCTCCACAACAAGGCGAGGC
ACAGGCAGAACGACGCAGAGAGAGCCAGAGTGGCGCGCCGGGCGGAACCT
ACTGGGGGGTGCGACCATTTCTCTGACACGAGAACAAGCAACACCAATAA
AATCCCATTTCCTGTGCGCACAAATCCGCTTCTTCGACGTCGGTCAGCCG
GTGAAATTTATCATTGTGTATGCCAACGAAAGCAAAGCATGCACGCACAC
ACACAACACGCAAGCTCTTCAGAGGAACGATACAATCCATATATAAATGG
AGAAATACGGCAAGGAGGGCAGAGGCCAAAGAAAAACAGTGTGGTGCTTT
TCCCTCACCAGGAGACCGGGAGATAACATAGAGTGGGGCACGGACGATTT
AAGCAGACAAAGCGGGGGGTATCGATGCACGCAGTACAGGCGTGGCGGCA
GAACCAACCAGAGGGGAGAACAAGAAGGGACTCTTATCGTAGAAGACAAG
ACACCTATTTGCGTATGTGACACATTTTCACTGAACAACGGTACCGTTCC
AATACCAACAATAAGGGGACGATATATCTCCACAACAAGGCGAGGCACAG
GCAGAACGACGCAGAGAGAGCCAGAGTGGCGCGCCGGGCGGAACCTACTG
GGGGGTGCGACCATTTCTCTGACACGAGAACAAGCAACACCAATAAAATC
CCATTTCCTGTGCGCACAAATCCGCTTCTTCGACGTCGGTCAGCCGGTGA
AATTTATCATTGTGTATGCCAACGAAAGCAAAGCATGCACGCACACACAC
AACACGCAAGCTCTTCAGAGGAACGATACAATCCATATATAA
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