mRNA_E-siliculosus-1a_M_contig95.17496.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17496.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17496.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:293938..294625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size390
Model size689
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.9339178-CDS-E-siliculosus-1a_M_contig95:293937..2943271622936508.9339178-CDS-E-siliculosus-1a_M_contig95:293937..294327Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 293938..294327 +
1696251110.0251448-CDS-E-siliculosus-1a_M_contig95:293937..2943271696251110.0251448-CDS-E-siliculosus-1a_M_contig95:293937..294327Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 293938..294327 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.983382-UTR-E-siliculosus-1a_M_contig95:294327..2946251622936508.983382-UTR-E-siliculosus-1a_M_contig95:294327..294625Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 294328..294625 +
1696251110.03538-UTR-E-siliculosus-1a_M_contig95:294327..2946251696251110.03538-UTR-E-siliculosus-1a_M_contig95:294327..294625Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 294328..294625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17496.1prot_E-siliculosus-1a_M_contig95.17496.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 293938..294327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17496.1

>prot_E-siliculosus-1a_M_contig95.17496.1 ID=prot_E-siliculosus-1a_M_contig95.17496.1|Name=mRNA_E-siliculosus-1a_M_contig95.17496.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=130bp
SLCPFSHLRPALFGCSRVFRLSTSPPPCSLPPLLCCPQGKKESRLDRYRS
ARAAVRCLPTAVNHLVGHTDGVHTVHSVRLEGSAGSSPAPLSSRTGSRIA
TKWTTGSLPLFVRSLVNGAEEQKIAPDDA*
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mRNA from alignment at E-siliculosus-1a_M_contig95:293938..294625+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17496.1 ID=mRNA_E-siliculosus-1a_M_contig95.17496.1|Name=mRNA_E-siliculosus-1a_M_contig95.17496.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=688bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:293938..294625+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCTCTCTGTCCGTTCAGCCATCTCCGTCCTGCTCTCTTCGGCTGCAGTCG
TGTCTTCCGTCTTTCGACGTCCCCCCCCCCGTGTTCCCTTCCCCCGCTGC
TCTGCTGTCCTCAAGGAAAAAAGGAAAGCCGTTTGGATCGGTATCGATCG
GCGCGCGCAGCGGTTCGTTGCCTGCCCACAGCAGTGAACCATCTTGTGGG
ACACACGGACGGGGTGCACACGGTTCATTCAGTACGATTGGAGGGTTCGG
CTGGAAGTTCACCAGCGCCACTGTCAAGCCGAACCGGTTCTCGGATTGCA
ACAAAATGGACGACGGGAAGCCTGCCGTTGTTCGTTCGGTCTCTCGTCAA
CGGGGCGGAAGAACAAAAAATAGCCCCCGACGACGCGTAGAAACCAAGCC
CCCTCGCACGAAAGGGCTGTCGCGATTCAACCTATTTAATACTGTAGCCA
ACACAGACGTTCATAACACGACCCCACATAGGAGATGCCCGATGTTCCAA
GTACAACCGAGTCAACAAAACCAGCGCGCCAGCCGTCCACAAAACACGCC
CATGATTACTTACAGTAGTTGACGCACACGACGGATCAACAAGGCATCAT
TCACATCAGCGAACCAGTTACAAATACGGAGTACTGCTGTATGAGGAAAA
CAACGGAACAAATAAGAGACAAACCAAACAAACACAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:293938..294625+

>mRNA_E-siliculosus-1a_M_contig95.17496.1 ID=mRNA_E-siliculosus-1a_M_contig95.17496.1|Name=mRNA_E-siliculosus-1a_M_contig95.17496.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=780bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:293938..294625+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCTCTCTGTCCGTTCAGCCATCTCCGTCCTGCTCTCTTCGGCTGCAGTCG
TGTCTTCCGTCTTTCGACGTCCCCCCCCCCGTGTTCCCTTCCCCCGCTGC
TCTGCTGTCCTCAAGGAAAAAAGGAAAGCCGTTTGGATCGGTATCGATCG
GCGCGCGCAGCGGTTCGTTGCCTGCCCACAGCAGTGAACCATCTTGTGGG
ACACACGGACGGGGTGCACACGGTTCATTCAGTACGATTGGAGGGTTCGG
CTGGAAGTTCACCAGCGCCACTGTCAAGCCGAACCGGTTCTCGGATTGCA
ACAAAATGGACGACGGGAAGCCTGCCGTTGTTCGTTCGGTCTCTCGTCAA
CGGGGCGGAAGAACAAAAAATAGCCCCCGACGACGCGTAGTCTCTCTGTC
CGTTCAGCCATCTCCGTCCTGCTCTCTTCGGCTGCAGTCGTGTCTTCCGT
CTTTCGACGTCCCCCCCCCCGTGTTCCCTTCCCCCGCTGCTCTGCTGTCC
TCAAGGAAAAAAGGAAAGCCGTTTGGATCGGTATCGATCGGCGCGCGCAG
CGGTTCGTTGCCTGCCCACAGCAGTGAACCATCTTGTGGGACACACGGAC
GGGGTGCACACGGTTCATTCAGTACGATTGGAGGGTTCGGCTGGAAGTTC
ACCAGCGCCACTGTCAAGCCGAACCGGTTCTCGGATTGCAACAAAATGGA
CGACGGGAAGCCTGCCGTTGTTCGTTCGGTCTCTCGTCAACGGGGCGGAA
GAACAAAAAATAGCCCCCGACGACGCGTAG
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