mRNA_E-siliculosus-1a_M_contig95.17466.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17466.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17466.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:5789..6150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size348
Model size364
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.666857-CDS-E-siliculosus-1a_M_contig95:5788..61361622936508.666857-CDS-E-siliculosus-1a_M_contig95:5788..6136Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 5789..6136 +
1696251109.962972-CDS-E-siliculosus-1a_M_contig95:5788..61361696251109.962972-CDS-E-siliculosus-1a_M_contig95:5788..6136Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 5789..6136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.687206-UTR-E-siliculosus-1a_M_contig95:6136..61501622936508.687206-UTR-E-siliculosus-1a_M_contig95:6136..6150Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 6137..6150 +
1696251109.9742155-UTR-E-siliculosus-1a_M_contig95:6136..61501696251109.9742155-UTR-E-siliculosus-1a_M_contig95:6136..6150Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 6137..6150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17466.1prot_E-siliculosus-1a_M_contig95.17466.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 5789..6136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17466.1

>prot_E-siliculosus-1a_M_contig95.17466.1 ID=prot_E-siliculosus-1a_M_contig95.17466.1|Name=mRNA_E-siliculosus-1a_M_contig95.17466.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=116bp
STCVAAVAPDPRDRRRREATEAVTIPGWEAVGFGCSGAQDFRCRCRLRVS
MSEACRSSLITLGAGPLSCLRVMIRYCSRNACCRKVAENKPCVLDSHLPR
EDWGRRSQSGVHLSV*
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mRNA from alignment at E-siliculosus-1a_M_contig95:5789..6150+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17466.1 ID=mRNA_E-siliculosus-1a_M_contig95.17466.1|Name=mRNA_E-siliculosus-1a_M_contig95.17466.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=362bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:5789..6150+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCAACGTGCGTAGCTGCCGTCGCGCCAGACCCCCGGGACCGTCGGCGGAG
GGAGGCAACGGAAGCGGTCACAATCCCCGGATGGGAAGCGGTCGGGTTTG
GTTGCTCCGGCGCTCAAGATTTTCGTTGTAGGTGTCGGCTCCGCGTAAGT
ATGTCTGAAGCATGCCGCTCTTCTCTCATTACCCTGGGTGCCGGGCCGTT
AAGCTGTTTGCGGGTCATGATTCGCTACTGCTCGAGAAATGCATGCTGCC
GAAAGGTAGCGGAGAACAAACCCTGCGTGCTCGATTCACACTTGCCACGA
GAGGATTGGGGACGGAGAAGCCAGTCTGGCGTTCACCTCTCTGTGTGACC
TGGATGAGGAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:5789..6150+

>mRNA_E-siliculosus-1a_M_contig95.17466.1 ID=mRNA_E-siliculosus-1a_M_contig95.17466.1|Name=mRNA_E-siliculosus-1a_M_contig95.17466.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:5789..6150+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TCAACGTGCGTAGCTGCCGTCGCGCCAGACCCCCGGGACCGTCGGCGGAG
GGAGGCAACGGAAGCGGTCACAATCCCCGGATGGGAAGCGGTCGGGTTTG
GTTGCTCCGGCGCTCAAGATTTTCGTTGTAGGTGTCGGCTCCGCGTAAGT
ATGTCTGAAGCATGCCGCTCTTCTCTCATTACCCTGGGTGCCGGGCCGTT
AAGCTGTTTGCGGGTCATGATTCGCTACTGCTCGAGAAATGCATGCTGCC
GAAAGGTAGCGGAGAACAAACCCTGCGTGCTCGATTCACACTTGCCACGA
GAGGATTGGGGACGGAGAAGCCAGTCTGGCGTTCACCTCTCTGTGTGATC
AACGTGCGTAGCTGCCGTCGCGCCAGACCCCCGGGACCGTCGGCGGAGGG
AGGCAACGGAAGCGGTCACAATCCCCGGATGGGAAGCGGTCGGGTTTGGT
TGCTCCGGCGCTCAAGATTTTCGTTGTAGGTGTCGGCTCCGCGTAAGTAT
GTCTGAAGCATGCCGCTCTTCTCTCATTACCCTGGGTGCCGGGCCGTTAA
GCTGTTTGCGGGTCATGATTCGCTACTGCTCGAGAAATGCATGCTGCCGA
AAGGTAGCGGAGAACAAACCCTGCGTGCTCGATTCACACTTGCCACGAGA
GGATTGGGGACGGAGAAGCCAGTCTGGCGTTCACCTCTCTGTGTGA
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