mRNA_E-siliculosus-1a_M_contig95.17491.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17491.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17491.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17491.1 vs. uniprot
Match: A0A6H5KL80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL80_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 8.800e-32
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 3 
Query:  168 AVALVAALLPFDRARVQAAAPGASPEGRQGAGAAKRHKGSRKRXXXXXXXXXXXX---RPEDARFNGTRHDNGTDAGAAAAGAEDTDGTAEVDVAVVRSDRT 464
            AVALVAALLPFDRARVQA APGASP+GRQGAGAAKRHKGSRKRXXXXXXXXXXXX   RPE ARFNGTR+DN TDAGAA  GAEDTDGTAEVDVAVVRSDRT
Sbjct:   22 AVALVAALLPFDRARVQATAPGASPKGRQGAGAAKRHKGSRKRXXXXXXXXXXXXXXXRPERARFNGTRYDNDTDAGAA--GAEDTDGTAEVDVAVVRSDRT 121
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KL80_9PHAE8.800e-3290.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:232249..236365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size342
Model size466
Exons2
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17491.1prot_E-siliculosus-1a_M_contig95.17491.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 232371..236365 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.603896-UTR-E-siliculosus-1a_M_contig95:232248..2323701622936508.603896-UTR-E-siliculosus-1a_M_contig95:232248..232370Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 232249..232370 +
1696251109.9141674-UTR-E-siliculosus-1a_M_contig95:232248..2323701696251109.9141674-UTR-E-siliculosus-1a_M_contig95:232248..232370Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 232249..232370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936508.6194634-CDS-E-siliculosus-1a_M_contig95:232370..2323731622936508.6194634-CDS-E-siliculosus-1a_M_contig95:232370..232373Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 232371..232373 +
1696251109.929916-CDS-E-siliculosus-1a_M_contig95:232370..2323731696251109.929916-CDS-E-siliculosus-1a_M_contig95:232370..232373Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 232371..232373 +
1622936508.6307065-CDS-E-siliculosus-1a_M_contig95:236026..2363651622936508.6307065-CDS-E-siliculosus-1a_M_contig95:236026..236365Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 236027..236365 +
1696251109.9402494-CDS-E-siliculosus-1a_M_contig95:236026..2363651696251109.9402494-CDS-E-siliculosus-1a_M_contig95:236026..236365Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 236027..236365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17491.1

>prot_E-siliculosus-1a_M_contig95.17491.1 ID=prot_E-siliculosus-1a_M_contig95.17491.1|Name=mRNA_E-siliculosus-1a_M_contig95.17491.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=114bp
MPTTAGSRRCRSAAAAVALVAALLPFDRARVQAAAPGASPEGRQGAGAAK
RHKGSRKRSGGGGGGGGGGGRPEDARFNGTRHDNGTDAGAAAAGAEDTDG
TAEVDVAVVRSDRT
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mRNA from alignment at E-siliculosus-1a_M_contig95:232249..236365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17491.1 ID=mRNA_E-siliculosus-1a_M_contig95.17491.1|Name=mRNA_E-siliculosus-1a_M_contig95.17491.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4117bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:232249..236365+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CAGACAGAACAAACCACGCCTCTTAGCGCTCTCGCGTGGGAATATTGGGA
CAGACAAGAGACAGAGAGCTGCTCAGGTTTTGGTCTTGCCGTGGCTGGTG
TGCGAAGGGAGAAGCTGATAAGATGGTGAGCGGAGCTCGAACGCATCGAA
AACTGCTGTTGCAGATTTTTTAGAGCAGGCAGCAGCCCAGAGCAGATGAA
ACGACGAAATGAATGTTTGCGGGGTCACAGTCTGCTGTGCGCTGGGCTGT
AGCCTCGGCGTATGGTGGCATTCACCACTAGCAGGGATACACGGCTGCCC
ACGTCTGGTGCATGGTTTCTGTCCGTGCCAGTGAGGGGCTGCACTACGGC
AATAGATTTTGATTGAAACACCCTGCGCGCCAAACAAAGTTGAGTTTGTT
TTTTTTCCTGAAAAAAAAAAAAAACACTGGGGTGCTAGCAAGCCATGTTG
TTGTCTTCGCCTTGCAGGTTGCTCACTTCGCGCCGGGATGTACATACGCC
GGATGAAAACGCACACGGCCTGTAGCCAGTAGTGGTACAGAATCGTGTGC
TTGTCGGGAGCAGATCATCCCGAGATTGAACTACTAATTGTACCCGAGTC
ATGGTCGTGGCTATTGTTGCATTTTCTGTAGCGGTCAAACTGGTGCACCA
TTGGAAGTGATCCGCCAGCGGAGTCACCTTTTGCTCCACCTGCACACCAG
CCCACACACGCATCCATCCATTCTACATACCTACAAAATAGCGTGCCCGG
AGGAGAACCGCCGTGCAAGCCGTCTCGAAGTGCAGCATGACGCCACGTGT
GGTTCGTTACAGGACGAATGCAACGTCCAAGACCATGCGCCTTCATGTGT
GTGTTTTCCTGTGAATGCGAACGACGTTTCTTGAGCTACGGCGTATGCAT
ATGCGCAGGCAGCAATACGCAGACGAAAGCGGAGAGGAGCAAGTGCAAGT
TGAGGGAGTGGCGCAACTTTAGTCCGTTGTTTAGTTTTTTTTCCGTTGCT
TTTTTGGTAAAGTGTGTGTCCTTTTTTTTAGTAGTTGCCTGTGACCACGG
AAGGCGTCCGCGTCAGTTGGACGCGTGCGGATGTTTCAAGGCATAATATA
TGGAACAGGAGATCGACCGGTAGGTTTTGATGCGAAGATAGCGAAGTACT
GCTGTTGTCTATGCATGCAACAACAGCAGTATTTCTTTTTTGCCGCTGTT
CTGCCGCAGAGTTCGTGTTTTGATGGTACGCACACCTGCAGCTGAGCCGT
TGTATTGTACATATTTCGAATATGTATCTTGATGTACTTGTGGTGTCCGC
ATACAGCTTTTTCTTCCGGGTTAACCTATATCGTCGGGTGTTCAATATCG
GCGCAATTCCAAGACTTCAAGCGGGACTAATATTTGGTTGTCGATGTCAA
CAACAACAAACAGCAGCAGCAGCAGCGGTAGCAGAAACGACGTACCCGCT
TGCGTAAGCAAAAGATGTTGTTCGGGTGTTCAGAAGTTTGATCACTTCAT
TTCCAACACTATCGTGACACCCACGCAAAACACTCATCTCTAGTGCTGCA
TCCACTAGATGCTGTAAGTGTCCTTAGCAAGTTGTTGCCAAATTATCTGC
TGCTGTAGCTGCCGCGATGCCCACATGGCCCGTTGAAGCTGTTGTCGAGT
ACCGGCGGCGATGCCGGCCTCCTCATGACCTGCTGCTGCTGCTGCCGCGA
CGACGAGTCTGACCGCCGTGTGCTCGGACCTCACTTGAATCCCCGCCCCC
CCACCGTGCACCGGGTACAGCAGTTAGCGCAATATGTGGTTTTCGCAGAT
TTTCAAAGAGCGCCAACATATTGGAGTAAGTATGGAATTGGCTAAGTTGG
GGTTGGGGTTAAGCTTTTACGTACCCCCTTCCTGTTTTTTCCTGTATATG
CACCCGCCCTGAACAACCTCTTGAAGTTTTGACCGAGGCTGGGATTGTTA
CTTTTTTCTTGTATGTTACGCTAGAATGTCCTCTGCGTAGGTTTTAGTGC
TGGGGCTCTTAACCGATCTCACCGCATAGTGCTCAAGGTCTTGGGTGTTG
AGGTTTCGAGGCTCTCAATTTCTTGGCTGCCAAGTGACTGAAGTGCGGGA
GCTATTTAGTATACTCACGAACACAGTACGTGAAGCGCGGCTTGTGGCCG
ACTGCTGTACGTCATGATGGCACCACTGCCCTTTCGCTCTGTACAAAACA
TGCCCTCTGAAAGGTAGCGATTGGCTGTAGCCTGGACCCGATAGCATGGG
CGGCTGAGGTGGCAGTGGTGTCCTTGCCCGAGAAGGCTTACCTTTGTAGT
GTCTCACATGGGACAGGACAACCATGGACATGGCAAGATGTGCGTGTTTG
CGTCCGCACAGCGGCAAGACTTCACATTTTGTTTCTTCGTGGGTGTGTGC
ATGTGCATCAATGGAAAAGAAACAACCTCATGTAAAGTGCAAAATTTTGA
ACGGGGCCGCACATACAACCATCGTCGCGCCCGTCGCACGCACCCCTGTC
CCTCTGGTGCACGCGTAGTAGTTGCACCACAAACGATTCACCCTGATGTG
TGTGTCGGGATTCGTGCACCATCAGCATCGCAGATAAGACTACTGCAAGG
TATTGAGTCGCTACCCCGCGGCTCATCACCCCGCCCTATCTATAATAGTA
TGGTGGTTCGTGTGGAATGCAGCTAAGAATGCGTTCGGCGGCACGAACGG
CGTTTCCCTTTCAGTGTGTCCTACTGCTGTAGGCTGCCGGCCTTCAGTAG
TTACGCGTTATGCCTACTAGCCGTTCCTCCAAATGATATGTTGAGCAAAA
TGGAGGCAATATCGCAAGAGGAGAAAAAACAAGAGAGGTGCGTCGGAGGC
GGATATACCGCACTACGGCAAGAACGCTATTTGCGGGGGGGAAAACAGGA
CCGACAAGTATAATAGTGGTTTTGTATGTTTGTTTTGGCGTTCTTTTGGC
GGTGCAATTGCTGGTTCGTTGTTCACGGGTTTTTCTTAGGATCAACACCC
GCAATTTTTGTTGTCAATCGTTGGCGCGTTGATACGTCTGCGATTGTGGG
ACTCTTGGTCTCTCTCCCCGTTGGTGGTCTTAGCAACGACGGCTGCTTAT
TGGTTTTCTGCTCCTGCGCTCGTAGTGGTAGCCAGCCTCCCACCTTTTGG
CTTCGCCACCCTGCCCTGGGGGCAATGCCTGAACTCAGTGGCTTCGTTCC
GACGGACACCCTTCCCACTTTGCGGGATTGGCCACACCCGCCCTCCGGAA
ACAGCCAGTGAAACGAGAAAGTTACCAACCATGGCCAGCTTACACACAGC
ATTCGACGTTCTAGCCAGAGGACCCTGGGGCTCTCGCTCTGCCGTAAGTT
TTTCGGCTGACGTTTTTTTTTTTTCTTGGCTCCCGGAGGCACGCCCCCCA
AAATTTCCGTCAAAGGCAACGCTAAAACCGTTTTGGAGCTGGGCCACGCG
GGAAGGTGTTGCGCTAGGTAGCACTCCAACGAAACATCCGAAGGGCAACC
AAAGCAAGGAGCGAACACGACCTATGTACAGTATATACCAAAACAATTAA
AGGTGACAGCTAAGTGGCGGCGAAGTGAGTGCATTCCCGGGAAGTCCCTC
CGCCCCATCCAGAGCTTTGTGCGCCTGCGAGAACGATACATCGCAACCCA
TAGGCGCTTCGCGACGAAACCCCTGGCCCGTGCTCTTGGCTTGCACCGTT
GCGAATTCCGGATGATGCTAATTCTTCTCAATTTTCCGATTCGCGTTGTT
GTTCAATCGCCACCTCCCGCTTGCCCAGCCTACCACTGCGGGGTCCCGCA
GGTGTCGTTCGGCAGCAGCCGCCGTCGCGCTTGTAGCGGCGCTGCTGCCT
TTCGATCGGGCGCGTGTCCAGGCAGCGGCTCCGGGGGCCAGCCCGGAGGG
ACGACAGGGGGCGGGGGCGGCGAAGCGGCACAAGGGCAGCCGAAAGCGCT
CGGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGTCGTCCAGAGGACGCG
AGGTTTAACGGGACGCGTCACGATAATGGCACCGACGCCGGCGCCGCCGC
CGCGGGTGCGGAGGATACCGACGGCACCGCGGAGGTCGATGTAGCCGTCG
TGCGGAGTGACCGAACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:232249..236365+

>mRNA_E-siliculosus-1a_M_contig95.17491.1 ID=mRNA_E-siliculosus-1a_M_contig95.17491.1|Name=mRNA_E-siliculosus-1a_M_contig95.17491.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:232249..236365+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATGCCTACCACTGCGGGGTCCCGCAGGTGTCGTTCGGCAGCAGCCGC
CGTCGCGCTTGTAGCGGCGCTGCTGCCTTTCGATCGGGCGCGTGTCCAGG
CAGCGGCTCCGGGGGCCAGCCCGGAGGGACGACAGGGGGCGGGGGCGGCG
AAGCGGCACAAGGGCAGCCGAAAGCGCTCGGGCGGCGGCGGCGGCGGCGG
TGGCGGCGGCGGTCGTCCAGAGGACGCGAGGTTTAACGGGACGCGTCACG
ATAATGGCACCGACGCCGGCGCCGCCGCCGCGGGTGCGGAGGATACCGAC
GGCACCGCGGAGGTCGATGTAGCCGTCGTGCGGAGTGACCGAACGCCTAC
CACTGCGGGGTCCCGCAGGTGTCGTTCGGCAGCAGCCGCCGTCGCGCTTG
TAGCGGCGCTGCTGCCTTTCGATCGGGCGCGTGTCCAGGCAGCGGCTCCG
GGGGCCAGCCCGGAGGGACGACAGGGGGCGGGGGCGGCGAAGCGGCACAA
GGGCAGCCGAAAGCGCTCGGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCG
GTCGTCCAGAGGACGCGAGGTTTAACGGGACGCGTCACGATAATGGCACC
GACGCCGGCGCCGCCGCCGCGGGTGCGGAGGATACCGACGGCACCGCGGA
GGTCGATGTAGCCGTCGTGCGGAGTGACCGAACG
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