mRNA_E-siliculosus-1a_M_contig944.17464.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig944.17464.1
Unique NamemRNA_E-siliculosus-1a_M_contig944.17464.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A2Z4HGD5_9EUKA (Uncharacterized protein n=1 Tax=Cyanophora sudae TaxID=1522369 RepID=A0A2Z4HGD5_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 4.140e-22
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159
            Y  LA+VSNC  PPKG+FSRVTHPSATK+L  S+DLHV SIPPAFILSQDQTL
Sbjct:   35 YGVLAVVSNCCPPPKGRFSRVTHPSATKILRSSFDLHVLSIPPAFILSQDQTL 87          
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A212LM72_9HYPH (Uncharacterized protein n=1 Tax=uncultured Pleomorphomonas sp. TaxID=442121 RepID=A0A212LM72_9HYPH)

HSP 1 Score: 70.5 bits (171), Expect = 1.540e-13
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159
            +  LA +S  YS PKG F RVTHPSAT  L  ++DLHV S+PPAF+LSQDQTL
Sbjct:   41 HPVLAEISLSYSEPKGMFPRVTHPSATPALLRAFDLHVLSLPPAFVLSQDQTL 93          
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A212LKU8_9HYPH (Uncharacterized protein n=2 Tax=uncultured Pleomorphomonas sp. TaxID=442121 RepID=A0A212LKU8_9HYPH)

HSP 1 Score: 70.5 bits (171), Expect = 2.110e-13
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159
            +  LA +S  YS PKG F RVTHPSAT  L  ++DLHV S+PPAF+LSQDQTL
Sbjct:   41 HPVLAEISLSYSEPKGMFPRVTHPSATPALLRAFDLHVLSLPPAFVLSQDQTL 93          
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A1H9GND4_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonas ureae TaxID=44577 RepID=A0A1H9GND4_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 2.840e-9
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = -1
Query:   13 LILAQDERWRYALHMQVVRK--C*NF--SGGRVSNT*EFTFRWGITIGNDC 153
            +ILAQ ERWR+ALHMQV R+  C +   SGGRVSNT E   +WGIT    C
Sbjct:    1 MILAQIERWRHALHMQVERQHGCLHLVASGGRVSNTSERVLKWGITHRKMC 51          
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A7J8PTL5_GOSRA (Uncharacterized protein (Fragment) n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8PTL5_GOSRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.860e-9
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159
            Y  LA+VSN  S PKG+F RVTHPS         DLH+ S+ P FILSQDQTL
Sbjct:   50 YEVLAVVSNYCSTPKGRFLRVTHPS---------DLHMLSMSPTFILSQDQTL 93          
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A0D2T5Z7_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2T5Z7_GOSRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.220e-9
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159
            Y  LA+VSN  S PKG+F RVTHPS         DLH+ S+ P FILSQDQTL
Sbjct:   16 YEVLAVVSNYCSTPKGRFLRVTHPS---------DLHMLSMSPTFILSQDQTL 59          
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A1F7QY20_9BACT (Uncharacterized protein n=1 Tax=Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_42_8 TaxID=1802139 RepID=A0A1F7QY20_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 4.260e-8
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGKFSRVTHPSATKV--LTLSYDLHV*SIPPAFILSQDQTL 159
            YA L  VS+ Y    G+F RVT P A +V    L  DLHV   PPAFILSQDQTL
Sbjct:    5 YAVLDTVSDAYPSLWGEFPRVTQPFAARVPRRALPLDLHVLGTPPAFILSQDQTL 59          
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A2N9CJ98_9BURK (Uncharacterized protein n=1 Tax=Burkholderia cenocepacia TaxID=95486 RepID=A0A2N9CJ98_9BURK)

HSP 1 Score: 53.1 bits (126), Expect = 1.270e-7
Identity = 30/56 (53.57%), Postives = 33/56 (58.93%), Query Frame = 3
Query:    3 CGISNRFQLLFPT*R*ILTCYSPVRH*----SFNTFVRLACVKHTASVHPEPGSNS 158
            CGI+  F  L PT   +   YSPVRH     S    VRLACV+H ASV  EPGSNS
Sbjct:   46 CGINPAFAGLSPTTGHVPMYYSPVRHSPPGASTRAAVRLACVRHAASVQSEPGSNS 101          
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A3B9NXX7_9PROT (Uncharacterized protein n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A3B9NXX7_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 1.900e-7
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = -1
Query:   28 ESLILAQDERWRYALHMQVVRK--C*NF--SGGRVSNT*EFTFRWGIT 159
            +SLILAQ ERWR+ALHMQV R+  C +   SG RVSN  E   +WGIT
Sbjct:   19 KSLILAQIERWRHALHMQVERQHGCLHLMASGERVSNISEHIRKWGIT 66          
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A8D6XTT1_STRTR (Uncharacterized protein n=2 Tax=Streptococcus thermophilus TaxID=1308 RepID=A0A8D6XTT1_STRTR)

HSP 1 Score: 51.2 bits (121), Expect = 7.490e-7
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 YAALAIVSNCYSPPKGK----FSRVTHPSA-TKVLTLSYDLHV*SIPPAFILSQDQTL 159
            YA LAIVSN Y P +G+    +S V + S  +K+L+ ++ LHV   PPAF+LSQDQTL
Sbjct:    8 YAVLAIVSNSYPPLQGRLPTRYSPVRNSSKKSKLLSSAFYLHVLGTPPAFVLSQDQTL 65          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z4HGD5_9EUKA4.140e-2279.25Uncharacterized protein n=1 Tax=Cyanophora sudae T... [more]
A0A212LM72_9HYPH1.540e-1364.15Uncharacterized protein n=1 Tax=uncultured Pleomor... [more]
A0A212LKU8_9HYPH2.110e-1364.15Uncharacterized protein n=2 Tax=uncultured Pleomor... [more]
A0A1H9GND4_9PROT2.840e-958.82Uncharacterized protein n=1 Tax=Nitrosomonas ureae... [more]
A0A7J8PTL5_GOSRA3.860e-958.49Uncharacterized protein (Fragment) n=1 Tax=Gossypi... [more]
A0A0D2T5Z7_GOSRA5.220e-958.49Uncharacterized protein n=1 Tax=Gossypium raimondi... [more]
A0A1F7QY20_9BACT4.260e-856.36Uncharacterized protein n=1 Tax=Candidatus Sacchar... [more]
A0A2N9CJ98_9BURK1.270e-753.57Uncharacterized protein n=1 Tax=Burkholderia cenoc... [more]
A0A3B9NXX7_9PROT1.900e-760.42Uncharacterized protein n=1 Tax=Gallionellaceae ba... [more]
A0A8D6XTT1_STRTR7.490e-751.72Uncharacterized protein n=2 Tax=Streptococcus ther... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig944contigE-siliculosus-1a_M_contig944:4013..4171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size117
Model size159
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936507.8420603-CDS-E-siliculosus-1a_M_contig944:4012..41291622936507.8420603-CDS-E-siliculosus-1a_M_contig944:4012..4129Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig944 4013..4129 +
1696251109.7573786-CDS-E-siliculosus-1a_M_contig944:4012..41291696251109.7573786-CDS-E-siliculosus-1a_M_contig944:4012..4129Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig944 4013..4129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936507.861725-UTR-E-siliculosus-1a_M_contig944:4129..41711622936507.861725-UTR-E-siliculosus-1a_M_contig944:4129..4171Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig944 4130..4171 +
1696251109.7686484-UTR-E-siliculosus-1a_M_contig944:4129..41711696251109.7686484-UTR-E-siliculosus-1a_M_contig944:4129..4171Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig944 4130..4171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig944.17464.1prot_E-siliculosus-1a_M_contig944.17464.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig944 4013..4129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig944.17464.1

>prot_E-siliculosus-1a_M_contig944.17464.1 ID=prot_E-siliculosus-1a_M_contig944.17464.1|Name=mRNA_E-siliculosus-1a_M_contig944.17464.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=39bp
YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*
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mRNA from alignment at E-siliculosus-1a_M_contig944:4013..4171+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig944.17464.1 ID=mRNA_E-siliculosus-1a_M_contig944.17464.1|Name=mRNA_E-siliculosus-1a_M_contig944.17464.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=159bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig944:4013..4171+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TATGCGGCATTAGCAATCGTTTCCAATTGTTATTCCCCACCTAAAGGTAA ATTCTCACGTGTTACTCACCCGTCCGCCACTAAAGTTTTAACACTTTCGT ACGACTTGCATGTGTAAAGCATACCGCCAGCGTTCATCCTGAGCCAGGAT CAAACTCTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig944:4013..4171+

>mRNA_E-siliculosus-1a_M_contig944.17464.1 ID=mRNA_E-siliculosus-1a_M_contig944.17464.1|Name=mRNA_E-siliculosus-1a_M_contig944.17464.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig944:4013..4171+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TATGCGGCATTAGCAATCGTTTCCAATTGTTATTCCCCACCTAAAGGTAA
ATTCTCACGTGTTACTCACCCGTCCGCCACTAAAGTTTTAACACTTTCGT
ACGACTTGCATGTGTAATATGCGGCATTAGCAATCGTTTCCAATTGTTAT
TCCCCACCTAAAGGTAAATTCTCACGTGTTACTCACCCGTCCGCCACTAA
AGTTTTAACACTTTCGTACGACTTGCATGTGTAA
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