mRNA_E-siliculosus-1a_M_contig94.17458.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17458.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17458.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig94.17458.1 vs. uniprot
Match: D7FU27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU27_ECTSI)

HSP 1 Score: 1229 bits (3181), Expect = 0.000e+0
Identity = 744/873 (85.22%), Postives = 762/873 (87.29%), Query Frame = 1 
Query:    1 CAAEVLPGGLSKGSDGGLETTTVAEATTRDLLRSPPSSWNPGGDGRVRKPAQSPRSPSRWATSARDLLTGLTSSPSPPRPLRFSVGSGGGGFARRNSAGGGRAGKGAVAAADGVLLASRVLAGVTEVHAEGVEAALALFRRGLRNRRKEGHVVISARLVSVGGSDKRVDKKRVPDSASETGELVFVELGDCPNGDLPQTLRTALAHLKVGNHGLGRVDPRAPRSSRLATTKKAAGVSPPLSEQSSGNXVRXXXXGLRHDPLWALLSAFAQAGTGGADTLLSCPTTVTGEGGGGADLRPSTSHSPRREVAVTGTMRGPRTGEGGAARGASVGRGPLVVSVIATLRSGDGRFQEEKALLQIMVSMPSFSWRSSPTGPAGTAXXXXXXXXVAYGSXXXXXXXXXXXXXXXXXXEASVARSNSAFSRSASXXXXXXXXXXXXXXXXXXXXDAGGDVIVSSGAADGGFGPPTFPSSRVASLTAEEDVVCGVGTNSTPFGNGSGSTARAVGGNLALQNLGELATGGGHDSARTGGQRSGSASRYRFSIEEADEEAAKAGGTMKASWENKSSERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLTDLLTAMTKHSRRPGGDGGRNVYSGGSLHGETA--RDDRIEGASIAAGARGVEGRDGVKVCYSGFGXXXXXXXXXXXXXXLPDSKRSLAXXXXXXXXXXXXXXXXXXXXXVEDAWKERPPGVGPWPLFEQTREGRASLDDKLRVSNRGSVGSSGGTRKIESSTAPETNGEPTATAPGGDGGKALGKSNRDYGTPYGDE*DRGRRNARPQQWWRASPQPILRGVQADGAGWVGPSQVTVWCLGRGSLDVFQASSEQRPWDV 2613
            C +EVLPGGLSKGS GGLETTTVAEATTRDLLRSPPSSWNPGGDGR RK AQSPRSPS WATSARDLLTGLTSSPSPPRPLRFSVGSGGGGF RRNS GGGR GKGAVAAADGVLLASRVLAGVTEVHA+GVEAALALFRRGLRNRRKEGHVVISARLVSVGGSDKRVDKKRV DSA ETGELVFVELGDCPNGDLPQTLRTALAHLKVGNHGLG VDPRAPRSSRLATTKKAAGVSPPLSEQS GN VR    GLRHDPLWALLSAFAQAGTGGADT L  P TVT EGGG ADLRPST HSPR EVA+TGTMRGPR GEGGAARGA+VGRGPLVVSV+ATLRSGDGRFQEEKALLQIMVSMPSFSWRSSPTGPAGTAXXXXXXXX AYGSXXXXXXXXXXXXXXXXXX     R          XXXXXXXXXXXXXXXXXXXX   GDVIVSSGAADGGF PPTFPSS   SLT EEDVVCGVG +STPFGNGSGSTA+AVGGNLALQNLG+LAT GGHDSARTGG RSGS S +RFSIEEADEEA KAGGTMKAS EN++SERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLT+LLTAMTKHSRRPGGDGGR+VYSGGSL+ +     DDRIEGAS+AAG R V GRDGVKV Y  FG XXXXXXXXXXXX LPDSKRSLA       XXXXXXXXXXX   VEDAWKERPPGVGPWPLFEQTREGRASLDDKLRVSNRGS GS GGTRK ESST PET        PGGDGGKALGK NRDYGTPYGDE DRGR+NARPQ        PILRGVQADG GWVGPSQ TVWC      DVFQAS+EQRPWDV
Sbjct:   15 CVSEVLPGGLSKGSGGGLETTTVAEATTRDLLRSPPSSWNPGGDGRGRKAAQSPRSPSTWATSARDLLTGLTSSPSPPRPLRFSVGSGGGGFGRRNSVGGGRPGKGAVAAADGVLLASRVLAGVTEVHADGVEAALALFRRGLRNRRKEGHVVISARLVSVGGSDKRVDKKRVLDSALETGELVFVELGDCPNGDLPQTLRTALAHLKVGNHGLGGVDPRAPRSSRLATTKKAAGVSPPLSEQSGGNNVRDGGGGLRHDPLWALLSAFAQAGTGGADTHLRSPMTVTDEGGGRADLRPSTPHSPR-EVAITGTMRGPRAGEGGAARGAAVGRGPLVVSVMATLRSGDGRFQEEKALLQIMVSMPSFSWRSSPTGPAGTAXXXXXXXXXAYGSXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVIVSSGAADGGFCPPTFPSSGATSLTTEEDVVCGVGNSSTPFGNGSGSTAQAVGGNLALQNLGDLATCGGHDSARTGGDRSGSVSSHRFSIEEADEEAGKAGGTMKASSENQNSERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLTNLLTAMTKHSRRPGGDGGRSVYSGGSLNADRGDGEDDRIEGASLAAGTRDVAGRDGVKVRYGSFGGXXXXXXXXXXXXELPDSKRSLASHQDDVAXXXXXXXXXXXSGSVEDAWKERPPGVGPWPLFEQTREGRASLDDKLRVSNRGSAGSGGGTRKFESSTPPETK------EPGGDGGKALGKPNRDYGTPYGDEQDRGRQNARPQ--------PILRGVQADGTGWVGPSQATVWCWEGAVPDVFQASTEQRPWDV 872
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig94.17458.1 vs. uniprot
Match: A0A6H5KRU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU7_9PHAE)

HSP 1 Score: 377 bits (968), Expect = 5.820e-111
Identity = 252/287 (87.80%), Postives = 259/287 (90.24%), Query Frame = 1 
Query: 1078 MVSMPSFSWRSSPTGPAGTAXXXXXXXXVAYGSXXXXXXXXXXXXXXXXXXEASVARSNSAFSRSASXXXXXXXXXXXXXXXXXXXXDAGGDVIVSSGAADGGFGPPTFPSSRVASLTAEEDVVCGVGTNSTPFGNGSGSTARAVGGNLALQNLGELATGGGHDSARTGGQRSGSASRYRFSIEEADEEAAKAGGTMKASWENKSSERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLTDLLTAMTKHSRRPGGDGGRNVYSGGSLHGETA 1938
            MVSMPSFSWRSSPTGPAGTA XXXXXXX  Y  XXXXXXXXXXXXXXXXXXEASVARSNS FSRSA XXXXXXXXXXXXXXXXX    AGGD IVSSGA DG FGPPTFPSS  ASLTAEEDVVCGVG +STPFGNGSGSTA+AVGGNLAL NLGELATG GHDSARTGG+ SGS S YR SIEEADEE  KAGGTMKAS EN++SERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLTDLLTAMTKHSRRPGGDG  NV+SGGSL+GETA
Sbjct:    1 MVSMPSFSWRSSPTGPAGTAAXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXEASVARSNSTFSRSAXXXXXXXXXXXXXXXXXXIG--AGGDGIVSSGAVDGDFGPPTFPSSGAASLTAEEDVVCGVGNSSTPFGNGSGSTAQAVGGNLALHNLGELATGRGHDSARTGGEPSGSVSSYRLSIEEADEEVEKAGGTMKASSENQNSERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLTDLLTAMTKHSRRPGGDGDCNVHSGGSLNGETA 285
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU27_ECTSI0.000e+085.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRU7_9PHAE5.820e-11187.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:603215..610550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1491
Model size2613
Exons9
Ec32 orthologEc-27_001190.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936506.5028539-UTR-E-siliculosus-1a_M_contig94:603214..6036371622936506.5028539-UTR-E-siliculosus-1a_M_contig94:603214..603637Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 603215..603637 +
1696251109.0880265-UTR-E-siliculosus-1a_M_contig94:603214..6036371696251109.0880265-UTR-E-siliculosus-1a_M_contig94:603214..603637Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 603215..603637 +
1622936506.5191195-UTR-E-siliculosus-1a_M_contig94:603938..6040491622936506.5191195-UTR-E-siliculosus-1a_M_contig94:603938..604049Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 603939..604049 +
1696251109.1039116-UTR-E-siliculosus-1a_M_contig94:603938..6040491696251109.1039116-UTR-E-siliculosus-1a_M_contig94:603938..604049Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 603939..604049 +
1622936506.5317855-UTR-E-siliculosus-1a_M_contig94:604389..6044791622936506.5317855-UTR-E-siliculosus-1a_M_contig94:604389..604479Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 604390..604479 +
1696251109.1160707-UTR-E-siliculosus-1a_M_contig94:604389..6044791696251109.1160707-UTR-E-siliculosus-1a_M_contig94:604389..604479Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 604390..604479 +
1622936506.54819-UTR-E-siliculosus-1a_M_contig94:604728..6050431622936506.54819-UTR-E-siliculosus-1a_M_contig94:604728..605043Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 604729..605043 +
1696251109.1264968-UTR-E-siliculosus-1a_M_contig94:604728..6050431696251109.1264968-UTR-E-siliculosus-1a_M_contig94:604728..605043Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 604729..605043 +
1622936506.748595-UTR-E-siliculosus-1a_M_contig94:610044..6101811622936506.748595-UTR-E-siliculosus-1a_M_contig94:610044..610181Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 610045..610181 +
1696251109.209996-UTR-E-siliculosus-1a_M_contig94:610044..6101811696251109.209996-UTR-E-siliculosus-1a_M_contig94:610044..610181Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 610045..610181 +
1622936506.7646446-UTR-E-siliculosus-1a_M_contig94:610504..6105501622936506.7646446-UTR-E-siliculosus-1a_M_contig94:610504..610550Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 610505..610550 +
1696251109.2248328-UTR-E-siliculosus-1a_M_contig94:610504..6105501696251109.2248328-UTR-E-siliculosus-1a_M_contig94:610504..610550Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 610505..610550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936506.6591523-CDS-E-siliculosus-1a_M_contig94:605043..6051781622936506.6591523-CDS-E-siliculosus-1a_M_contig94:605043..605178Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 605044..605178 +
1696251109.1372907-CDS-E-siliculosus-1a_M_contig94:605043..6051781696251109.1372907-CDS-E-siliculosus-1a_M_contig94:605043..605178Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 605044..605178 +
1622936506.6772804-CDS-E-siliculosus-1a_M_contig94:606260..6069681622936506.6772804-CDS-E-siliculosus-1a_M_contig94:606260..606968Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 606261..606968 +
1696251109.1479528-CDS-E-siliculosus-1a_M_contig94:606260..6069681696251109.1479528-CDS-E-siliculosus-1a_M_contig94:606260..606968Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 606261..606968 +
1622936506.6927779-CDS-E-siliculosus-1a_M_contig94:607246..6074051622936506.6927779-CDS-E-siliculosus-1a_M_contig94:607246..607405Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 607247..607405 +
1696251109.1664236-CDS-E-siliculosus-1a_M_contig94:607246..6074051696251109.1664236-CDS-E-siliculosus-1a_M_contig94:607246..607405Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 607247..607405 +
1622936506.7123353-CDS-E-siliculosus-1a_M_contig94:609307..6097241622936506.7123353-CDS-E-siliculosus-1a_M_contig94:609307..609724Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 609308..609724 +
1696251109.178924-CDS-E-siliculosus-1a_M_contig94:609307..6097241696251109.178924-CDS-E-siliculosus-1a_M_contig94:609307..609724Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 609308..609724 +
1622936506.7294521-CDS-E-siliculosus-1a_M_contig94:609972..6100441622936506.7294521-CDS-E-siliculosus-1a_M_contig94:609972..610044Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 609973..610044 +
1696251109.190247-CDS-E-siliculosus-1a_M_contig94:609972..6100441696251109.190247-CDS-E-siliculosus-1a_M_contig94:609972..610044Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 609973..610044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17458.1prot_E-siliculosus-1a_M_contig94.17458.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 605044..610044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17458.1

>prot_E-siliculosus-1a_M_contig94.17458.1 ID=prot_E-siliculosus-1a_M_contig94.17458.1|Name=mRNA_E-siliculosus-1a_M_contig94.17458.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=497bp
MRGPRTGEGGAARGASVGRGPLVVSVIATLRSGDGRFQEEKALLQIMVSM
PSFSWRSSPTGPAGTAAAAAAAVAVAYGSTAASAAAVPSAPPASSSEEAS
VARSNSAFSRSASCSLSSSEAAATAATATAAASDAGGDVIVSSGAADGGF
GPPTFPSSRVASLTAEEDVVCGVGTNSTPFGNGSGSTARAVGGNLALQNL
GELATGGGHDSARTGGQRSGSASRYRFSIEEADEEAAKAGGTMKASWENK
SSERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKL
TDLLTAMTKHSRRPGGDGGRNVYSGGSLHGETARDDRIEGASIAAGARGV
EGRDGVKVCYSGFGGGGGGGGGTSTRQELPDSKRSLASPQDDVAASFRGG
GGGGGGGGVEDAWKERPPGVGPWPLFEQTREGRASLDDKLRVSNRGSVGS
SGGTRKIESSTAPETNGEPTATAPGGDGGKALGKSNRDYGTPYGDE*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig94:603215..610550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17458.1 ID=mRNA_E-siliculosus-1a_M_contig94.17458.1|Name=mRNA_E-siliculosus-1a_M_contig94.17458.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7336bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:603215..610550+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGTGCTGCCGAGGTGTTGCCAGGTGGACTTTCGAAGGGCAGCGACGGGGG
GTTGGAGACGACGACAGTGGCCGAGGCAACCACTCGTGACCTGCTGCGAT
CGCCGCCTTCTTCTTGGAATCCTGGCGGCGATGGCAGAGTAAGGAAGCCG
GCGCAGTCGCCGCGCTCTCCGAGCAGGTGGGCGACATCGGCGAGGGACTT
GCTGACGGGTTTGACGTCGTCTCCTTCACCTCCTCGCCCCTTGCGGTTCT
CTGTCGGAAGCGGCGGCGGAGGTTTCGCGCGCCGAAACTCGGCGGGAGGA
GGACGAGCAGGAAAAGGAGCGGTGGCCGCCGCGGACGGGGTGTTGTTGGC
GTCGCGTGTGCTCGCTGGAGTTACCGAGGTCCACGCAGAAGGGGTTGAGG
CAGCTCTCGCGTTGTTCCGGCGGGTGAGAATAAGCGGTGGGGTTTTAGGG
GGCGAGTCGTATGTGGTACCGCTTTTCTCGTGGCTTGCCCTCTGAGCTGT
CTTGCGAAGAACACACTTCACGGTCACCCTCTTTCGGTTTTCGAACTCAG
TGGCCGTACATCTCTCGATACGCTAGCACCAATGACCGCCAGAATGCACC
AATATTGGCAGGGATGTGCCTGAACGGACTGAAAAGTGCGGAATTTCCGT
CGCTGACGCCGCTGCACGCCCGCATCTGTCCGATACCTTGCGGCCCGCCC
GTTGCTGTACCCTCTTCGATGTAGGGCCTGAGGAACCGCCGCAAGGAAGG
TCATGTTGTCATCTCCGCGAGACTAGTCTCGGTGGGCGGCAGTGACAAGC
GTGTCGACAAGAAACGGGTGCCGGATAGTGCGTCGGTGAGATTCGTGCTC
TGTTGTGTTGACGTTGGCTCTCATTTTATTGCGCGTGTGTAGGTGAAGGG
TTCTGCCTGTCCATTTGCTTTTTCGGACTCTGGGGCGGCTTGTGCGGGCA
AGGGAGGTAGGTATCAGCCGGTATCCACAGGTGCGGCCAATTTGTCGCTC
GTGGTTGCTTCGGTGAGTGTTAAAGCCACCCATTCCAAGAAGAAACATGG
CTAGGTGCCTCATGTCGGGAGAGAAAAGTTGAATGGCAAATATACGTGCA
GGGCGGCACTCGATTTTGCACCTCAGGATGCTGGTCATAAACCGATCACC
CGCCCTCTCTTCCCCTTCGCATCAGGAAACGGGGGAGCTGGTGTTCGTCG
AGCTTGGCGATTGCCCAAACGGTGATCTTCCCCAGACGCTCCGGACTGCA
CTGGCACACCTCAAGGTACGCGAACAAATCCCGCATGCTACCGAAACGTC
GATGTTGTACCTGTTTTGTACACCTGCCCTCCCCCCACCCACTCCTTCCG
TCACCGGCCGCCGAGCGTCAAGAACCCTGAGTAGTACGTGTGTGAGAGGC
GTCAGTGTTGACGCCCACCCGCCCTCCCTCTGCCGAAACCGTGTCCCGCC
GTACGCACACCTCCCGTTTGGTTGAAACAACAAACGACGCGCACTCTTAC
GGCGGCAGCAACAGGTCGGAAACCATGGTCTAGGAAGAGTGGACCCCCGA
GCGCCTAGATCATCACGACTAGCGACCACAAAGAAGGCAGCAGGCGTGTC
GCCGCCGCTGAGTGAGCAGAGCAGCGGTAACAACGTTCGAGGTGGCGGTG
GCGGTCTCCGCCATGACCCGTTGTGGGCGCTCTTGAGCGCGTTCGCCCAG
GCCGGAACCGGGGGGGCGGACACCCTTTTGAGCTGTCCCACGACGGTGAC
AGGCGAAGGAGGCGGTGGAGCTGACTTGCGGCCATCAACGTCGCATTCTC
CCAGGAGAGAGGTAGCTGTAACGGGTACCATGAGGGGGCCAAGGACAGGG
GAGGGGGGGGCGGCGAGGGGAGCGTCGGTGGGGAGGGGTCCGCTGGTAGT
GTCGGTCATCGCCACGCTGCGCTCGGGAGATGGCCGCTTTCAGGAAGAGA
AGGCCTTGCTCCAGGTGAGAGAGAAAAAGCAGCAGAAAGTCAGGATTTCT
TCGTCGATGCCAATGACAACAATTCTCTATAGATACAGAGCAGAGTCCCT
GGAGTGGTGATCAACCGTTCGCCAGCGGAGGAATTTTTCTCTCTTGATAT
GTGGGGAGGAAAAGCGAAGGTGGCCGAGGTTTTAAGAAAGGTGGAAGTGA
GAGAGAGGGGGCTTCGTGGGCATCTCCATATCTCCGAGATTCACCTGAAT
GGTCGCCGTATTCGGTTAATCTTTCTTGGTTAACATGTCCGGACCGGTAG
AACATTGTTCGTAGTCTTCAGATCTTTGCTGGTCGCATGGGCGTCAGTAT
CTCAAGGAAGATACCTATATCGTCCGCAACTATTTGCGCATTTCATATAT
TCTTATGCTCTACGAGGCAGCTAGCCGCTAGGAATCGCCACTCGATCAAT
AGACAACTTTTCAGAATCCTTCATCCGCCCTTCTCTGCTCTGTCACCAAC
CCCTAACCTGGTTCTCGTTTGGTCTACTGGTCCTGCTGTTATCTTCTCGA
CCGCCGGGGCGCGCGTCGGCTCCTATGGGTGCATGGGAAACCTTGAAAGG
TGCTGGCAAAGCCTTGTCGAAATGGGACAGTTTCATGGAGACGTCGACCA
CTAAGCCGGGTGAGGCTAGTTCATTTCTGGTTCCATTTTGGCGCTGTCTG
CTTCCCTTTGCTGAAGAGATTCGTGTCCCCGCCGTCCGCGGAAAATAATC
AACTTCGGAGGCAACAGGATGCTTGTCTGAGTATTTGTGAAATTTGAGGC
GTCGTTCAGACGGAAAGGTGTCTTGGTGGAAAACGATGAAGTGACTGACA
GAGAGGTGTATGATGCTGAGTGGAGCACCCCACACCCATGACCTGCTAAA
TATCGAAACACACCCACCGCTCCTCTGGTTTTACTTGATTGGAGGTACGT
CTTGAAACCATAGTTTTGGCACGCACGCACAGAGTCAAGCGACAGTAAGC
CAGCATTTGATCACCTGACGTCAGGTGTGCGTTCATACCGAAAGAAACAT
CCTAACGTGCCTATCGTCTCTCGATCCCGCATCTTCTTGCCGACAGATAA
TGGTGTCGATGCCGAGTTTCTCGTGGCGGTCTTCGCCTACGGGTCCTGCT
GGCACGGCGGCAGCGGCTGCTGCAGCCGTGGCGGTGGCATACGGCTCGAC
GGCGGCGTCGGCGGCCGCTGTTCCCTCCGCGCCGCCGGCCTCTTCCTCAG
AAGAGGCGTCGGTGGCGAGGTCAAACTCCGCGTTCTCACGCTCGGCGTCG
TGTTCCTTGTCCAGCAGTGAAGCAGCCGCTACTGCTGCTACTGCTACCGC
CGCGGCTTCTGATGCCGGCGGGGACGTTATCGTGTCTAGCGGTGCTGCCG
ATGGTGGTTTTGGCCCTCCAACCTTTCCATCGAGCAGAGTAGCTTCCCTC
ACGGCTGAGGAAGACGTGGTGTGCGGCGTCGGGACCAACAGTACACCGTT
TGGCAATGGCAGCGGCAGCACTGCCCGGGCTGTCGGTGGCAACCTCGCGC
TGCAGAATCTAGGCGAGCTGGCCACCGGTGGGGGACATGATTCAGCGAGG
ACCGGCGGTCAACGTTCTGGTAGCGCCAGCAGATACAGGTTTTCCATCGA
AGAGGCGGACGAGGAAGCGGCGAAGGCAGGGGGTACGATGAAGGCCTCAT
GGGAGAACAAGAGCTCCGAGCGGCGTATGAGCCCGCCGTGGGACGACTCC
ATGCTGGGTCTCCGCGGCCTCACCCCAGATGAGCTGGTTGCTAGGGTGCT
CCAGGTGAGGACGTTTCTGTACAACAGAAAAGCGGAGGAAACAATACAGG
TCTTGGGTTTCACCAGCTTGATCAAGGACCACAGGCAGAAGATAGTACGG
AAACTTTCAAGCCCTATGCACACGGGCGAACGTATGTTTTTCGAAACACA
GCCAAACACTCTTCAGAAACCGGTCCTAGCCACCTCTCTCTGTCTCTCGG
TTGGAGGTTTGGGTGCTACCGGCACTGCTGAAGTTTCTCGAACCGGGCAT
CGTTGTTCTTTTCTTGTTCCGCCCGTTCCCAGGCAGAGAAAGAGTCGCGC
CACTGGCAAGCCCAGCACGCGCTTGTCGACCGCAAGCTAACCGACCTGTT
GACGGCGATGACGAAGCACAGCCGACGACCTGGCGGCGACGGTGGCCGCA
ACGTCTACAGCGGCGGCAGCCTCCACGGTGAGACCGCACGCGTGCCTCCG
GAGGCGGATGCTGCAACCACTGGGCAGGGGTCATCGGCACCAGCTGCCGG
CTCGTGTCCCGAACAGCCGTCGTGTTTCTCGCCCCACAGAGGTGGACGCG
CGACAGAAACAACGGAGGCGACGCCGCGGGTTGTTACTCCAGCTGATGAG
GGTGACGCTGGCACGTCGGTTGGGATCGATAGCGCCCGAAACCGTGGGTG
CGGTGGTGTTGACGAGGCAAGAGACAAAACTGCCAGAGGTATGATTGACG
AATGGAATGGCAACGGGATGCCGATTTCGCCAAGGATAACAACGATCGAG
GGTGCACGAGGAAAGGAACCGATGCTACATAGTCGCGGTGACGGCGGCGT
CCATATTGCTGTGGTTGATCAGGCATCCACCAACAAGCGTTCTCTGCGGA
GCACGCCGGTTGGCGTGGCGGCCGCGGACAACGGCGATAGCAATAGCGAT
AAAAACGACATCAACGACAGCGGCAACAACAGCCCGTCTCAGCAGCTTAC
TTTCAAGGAACGTCGTGCCGTGTTCTCCTCCAACAGCTCCGTTCCGGCGC
CCCCGGGGGGCGTTGCTTTGCCTTGGTCCATTGCGGTGGGGAAGGTGGAC
ACCCGCACGACGCCCTCGCCGCCCCAGCCGTCGCTGCAGCGGGCAGGGTC
TTGCACACCACCCACCATTGCGGCGTTTTCCCCCGCCGCCGTGGAGGCCG
CCCGCCAGAACCTTAAACGCAGCAAAACATCGGCAAATCGTGTTTCGGCA
CCGGTGGCGCTGGCGGCAACCGGAGCCTCACCCCGCCGGGGCAGGGGGCG
ACCCTGCCGTTCGTCTGGCTCCCGGTCGTCGGCCGCCTCAGTATCGCCGG
TCTTGCTCTCTTCTTCTGCGGCGTCGTCCCCGTCCACCGCGCCGTTCACG
CCACCGCGTTCACGCCATCGCCGCGGCACCGCCGCTACCGCGCCCTCCCC
GCCGGCGCCGTCCCCGTGCAGCACCGCAGACAGGTTTAGGGGTACGCCCG
GCAGCCCCGCAAGGCTGTCGTCAGCGTCGTCGACTTCATCGTGGGTGCCT
TCGCCGCAATCTTCTTCGGCGCCGTTTTCGCCCCAACTCGAATCGCCCCC
GTCCTTTCCGAAGCCGATCGCGGAGATGGGGAGGCGAGCGAGAGCTGTCG
CGCCAGACGGTGATGGCAAGCTCGACGACGAGGAGTTCGGGGATTCGGAA
GTGCTGCTGTCCGTACGGTCCGGGTTCTGGCAGGGATGGCCCGGCGGCCG
CTGCCAAGGAGCAACGGGGACCCCTCGCGAATCTTCCGTCTCCGTTCTTC
CGTCGAAAGTTGATCTTCCAGGAGGGGGGCGGCCCGGTGTGAGAAGCGGT
GTAGGCATAGGCTCAGGGACGGACCAGCCCAGACACCAGCAGCAGCAGCA
GCAGCAGCAGCAGCGGGGGCGTGGAACCGCTAGGCCCGCGACCATTGGCG
ACGGTGCCGGCGGCGATGTTTCCTTCTCTCCTGGCGCTGGTGCTATTTCT
TCCCTTTCGGGATCCTCGCGGTGTTGGTCACCGGCGGTCAAGTACAGTCC
GTCGGGACCCCCTTCCCTGTCGCCCGCGCATGCCAAGGCAGTATCCGCTT
CGTCCTCTTCGATGGCCTCCGTGATTCTAGAGACAGCGGGGGCGGCGCCG
GCGGCACCAGCATCGCGTCTGCCGCCAACGGCGCCGACACTATCGTCTCG
CGCGCCCGCTTCGCACCCAGAAGCTTTGCAACCTACACCTGCAGTCACAG
AAAATTCGGGATCTGCTGCGGCCTCGTCCCCGTTTTGGAACGGGACCGCC
CTCAGGCAGAAAAGCGTGCGACTGCAGCAACCGTCGGTTTCAGATTATCA
CGTTCCTGCCGCTGCGGTTTCCGGTCCGAACCTCGTGCCCGAGGATGATC
GCATCGAGGGAGCGTCAATAGCAGCAGGAGCACGAGGCGTGGAGGGACGG
GACGGGGTCAAGGTGTGCTACAGCGGCTTTGGTGGTGGAGGCGGTGGCGG
AGGCGGAACATCAACGAGACAAGAACTCCCCGACTCCAAACGTTCGTTGG
CGTCCCCCCAAGATGACGTTGCCGCTTCGTTCCGTGGAGGCGGCGGCGGC
GGCGGCGGCGGCGGCGTGGAGGACGCGTGGAAGGAGAGGCCTCCGGGTGT
TGGACCGTGGCCGTTGTTCGAACAGACGAGAGAGGGTAGGGCTTCCCTCG
ATGACAAGCTGCGTGTCAGCAACCGCGGGTCCGTTGGCTCTAGTGGAGGG
ACGAGAAAGATCGAAAGTTCAACAGCGCCGGAAACGAATGGCGAGCCGAC
GGCGACGGCGGTGATTCCGTCGGTGGCGGCCGAAGCTGACCCCGAAGTCT
CCATCGGGAATATCAGCACAATGCAGGCTTCTAGGCTTCGAGCTTTGAGG
GAGAAAATGGAACGGCGGTATTCCTGGGCGCGGGGGACGACGATACCTGC
GACAAAGGGGGCGACGACGAGCTTAGCGGTCAACATCGCGGCTTCGTCGC
CGATCCCTGGGGGATCCCACTCGTCCCTCCACATGTCGGGGGCGTACTCG
AGCCAGAGCCAGGAGGGGATGGTGGAAAAGCCCTGGGGAAGTCGAACAGG
GATTACGGCACCCCGTACGGCGATGAGTAGGACCGGGGTCGACGAAACGC
ACGCCCACAACAATGGTGGCGGGCCTCCCCCCAACCGATCCTCCGAGGGG
TTCAAGCTGATGGTGCCGGCTGGGTGGGACCCTCCCAAGTAACGGTCTGG
TGCTTGGGAAGGGGAAGGTGCGGGACAGGGTGCCTGGGTGACGCGTGTAG
GGTGTCCGATGGGTTGTTAGTAATGCGCCATGAGATAGAGAAGAGAGGGA
GAAGGAGCCCGACTGAGACAGGGAGGACCGAATTGCCAATACAACGGGCG
TAGCACTATCCGTCACTCTGTGAACGTGGACGACGGGTCCGTCATGTCAA
TCCTCCTGTAGCACACAGAGAACTAGACAAGAAGTGGTCCACGCCGTGAA
CACAGAAGAACCGCCTGTTTCCGGGAAACCAAGTTGTTCGGGCTCACTTC
ACCGTGCTTTCAGTGTATTTCGCACACATGCACATTGTAGTCTAGACGTG
TTTCAGGCGAGCTCGGAACAAAGACCGTGGGACGTG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:603215..610550+

>mRNA_E-siliculosus-1a_M_contig94.17458.1 ID=mRNA_E-siliculosus-1a_M_contig94.17458.1|Name=mRNA_E-siliculosus-1a_M_contig94.17458.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2982bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:603215..610550+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGGGGGCCAAGGACAGGGGAGGGGGGGGCGGCGAGGGGAGCGTCGGT
GGGGAGGGGTCCGCTGGTAGTGTCGGTCATCGCCACGCTGCGCTCGGGAG
ATGGCCGCTTTCAGGAAGAGAAGGCCTTGCTCCAGATGAGGGGGCCAAGG
ACAGGGGAGGGGGGGGCGGCGAGGGGAGCGTCGGTGGGGAGGGGTCCGCT
GGTAGTGTCGGTCATCGCCACGCTGCGCTCGGGAGATGGCCGCTTTCAGG
AAGAGAAGGCCTTGCTCCAGATAATGGTGTCGATGCCGAGTTTCTCGTGG
CGGTCTTCGCCTACGGGTCCTGCTGGCACGGCGGCAGCGGCTGCTGCAGC
CGTGGCGGTGGCATACGGCTCGACGGCGGCGTCGGCGGCCGCTGTTCCCT
CCGCGCCGCCGGCCTCTTCCTCAGAAGAGGCGTCGGTGGCGAGGTCAAAC
TCCGCGTTCTCACGCTCGGCGTCGTGTTCCTTGTCCAGCAGTGAAGCAGC
CGCTACTGCTGCTACTGCTACCGCCGCGGCTTCTGATGCCGGCGGGGACG
TTATCGTGTCTAGCGGTGCTGCCGATGGTGGTTTTGGCCCTCCAACCTTT
CCATCGAGCAGAGTAGCTTCCCTCACGGCTGAGGAAGACGTGGTGTGCGG
CGTCGGGACCAACAGTACACCGTTTGGCAATGGCAGCGGCAGCACTGCCC
GGGCTGTCGGTGGCAACCTCGCGCTGCAGAATCTAGGCGAGCTGGCCACC
GGTGGGGGACATGATTCAGCGAGGACCGGCGGTCAACGTTCTGGTAGCGC
CAGCAGATACAGGTTTTCCATCGAAGAGGCGGACGAGGAAGCGGCGAAGG
CAGGGGGTACGATGAAGGCCTCATGGGAGAACAAGAGCTCCGAGCGGCGT
ATGAGCCCGCCGTGGGACGACTCCATGCTGGGTCTCCGCGGCCTCACCCC
AGATGAGCTGGTTGCTAGGGTGCTCCAGATAATGGTGTCGATGCCGAGTT
TCTCGTGGCGGTCTTCGCCTACGGGTCCTGCTGGCACGGCGGCAGCGGCT
GCTGCAGCCGTGGCGGTGGCATACGGCTCGACGGCGGCGTCGGCGGCCGC
TGTTCCCTCCGCGCCGCCGGCCTCTTCCTCAGAAGAGGCGTCGGTGGCGA
GGTCAAACTCCGCGTTCTCACGCTCGGCGTCGTGTTCCTTGTCCAGCAGT
GAAGCAGCCGCTACTGCTGCTACTGCTACCGCCGCGGCTTCTGATGCCGG
CGGGGACGTTATCGTGTCTAGCGGTGCTGCCGATGGTGGTTTTGGCCCTC
CAACCTTTCCATCGAGCAGAGTAGCTTCCCTCACGGCTGAGGAAGACGTG
GTGTGCGGCGTCGGGACCAACAGTACACCGTTTGGCAATGGCAGCGGCAG
CACTGCCCGGGCTGTCGGTGGCAACCTCGCGCTGCAGAATCTAGGCGAGC
TGGCCACCGGTGGGGGACATGATTCAGCGAGGACCGGCGGTCAACGTTCT
GGTAGCGCCAGCAGATACAGGTTTTCCATCGAAGAGGCGGACGAGGAAGC
GGCGAAGGCAGGGGGTACGATGAAGGCCTCATGGGAGAACAAGAGCTCCG
AGCGGCGTATGAGCCCGCCGTGGGACGACTCCATGCTGGGTCTCCGCGGC
CTCACCCCAGATGAGCTGGTTGCTAGGGTGCTCCAGGCAGAGAAAGAGTC
GCGCCACTGGCAAGCCCAGCACGCGCTTGTCGACCGCAAGCTAACCGACC
TGTTGACGGCGATGACGAAGCACAGCCGACGACCTGGCGGCGACGGTGGC
CGCAACGTCTACAGCGGCGGCAGCCTCCACGGTGAGACCGCACGCGCAGA
GAAAGAGTCGCGCCACTGGCAAGCCCAGCACGCGCTTGTCGACCGCAAGC
TAACCGACCTGTTGACGGCGATGACGAAGCACAGCCGACGACCTGGCGGC
GACGGTGGCCGCAACGTCTACAGCGGCGGCAGCCTCCACGGTGAGACCGC
ACGCGATGATCGCATCGAGGGAGCGTCAATAGCAGCAGGAGCACGAGGCG
TGGAGGGACGGGACGGGGTCAAGGTGTGCTACAGCGGCTTTGGTGGTGGA
GGCGGTGGCGGAGGCGGAACATCAACGAGACAAGAACTCCCCGACTCCAA
ACGTTCGTTGGCGTCCCCCCAAGATGACGTTGCCGCTTCGTTCCGTGGAG
GCGGCGGCGGCGGCGGCGGCGGCGGCGTGGAGGACGCGTGGAAGGAGAGG
CCTCCGGGTGTTGGACCGTGGCCGTTGTTCGAACAGACGAGAGAGGGTAG
GGCTTCCCTCGATGACAAGCTGCGTGTCAGCAACCGCGGGTCCGTTGGCT
CTAGTGGAGGGACGAGAAAGATCGAAAGTTCAACAGCGCCGGAAACGAAT
GGCGAGCCGACGGCGACGGCGGATGATCGCATCGAGGGAGCGTCAATAGC
AGCAGGAGCACGAGGCGTGGAGGGACGGGACGGGGTCAAGGTGTGCTACA
GCGGCTTTGGTGGTGGAGGCGGTGGCGGAGGCGGAACATCAACGAGACAA
GAACTCCCCGACTCCAAACGTTCGTTGGCGTCCCCCCAAGATGACGTTGC
CGCTTCGTTCCGTGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGTGGAGG
ACGCGTGGAAGGAGAGGCCTCCGGGTGTTGGACCGTGGCCGTTGTTCGAA
CAGACGAGAGAGGGTAGGGCTTCCCTCGATGACAAGCTGCGTGTCAGCAA
CCGCGGGTCCGTTGGCTCTAGTGGAGGGACGAGAAAGATCGAAAGTTCAA
CAGCGCCGGAAACGAATGGCGAGCCGACGGCGACGGCGCCAGGAGGGGAT
GGTGGAAAAGCCCTGGGGAAGTCGAACAGGGATTACGGCACCCCGTACGG
CGATGAGTAGCCAGGAGGGGATGGTGGAAAAGCCCTGGGGAAGTCGAACA
GGGATTACGGCACCCCGTACGGCGATGAGTAG
back to top