mRNA_E-siliculosus-1a_M_contig94.17453.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17453.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17453.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17453.1 vs. uniprot
Match: D7FU30_ECTSI (zf-met2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU30_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 8.170e-16
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 2 
Query: 1979 QVCRQSFMSVSNDAMLTDHVTAKHNKKKTPAECFPGRLS 2095
            QVCRQSFMSVSNDAML DHVTAKHNKKKTPAECFPGRLS
Sbjct:   41 QVCRQSFMSVSNDAMLADHVTAKHNKKKTPAECFPGRLS 79
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17453.1 vs. uniprot
Match: Y2309_ARATH (Uncharacterized protein At2g23090 n=4 Tax=Camelineae TaxID=980083 RepID=Y2309_ARATH)

HSP 1 Score: 52.8 bits (125), Expect = 5.570e-5
Identity = 31/46 (67.39%), Postives = 33/46 (71.74%), Query Frame = 2 
Query:  488 MGGGNAQKSATARARNEAKKAKAGKGSQLAVNKAAQSIVCQVCFIT 625
            MGGGNAQKSA ARA+N  K   AGKGSQL  NK A SI C+VC  T
Sbjct:    1 MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQT 46
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU30_ECTSI8.170e-1697.44zf-met2 domain-containing protein n=2 Tax=Ectocarp... [more]
Y2309_ARATH5.570e-567.39Uncharacterized protein At2g23090 n=4 Tax=Cameline... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:574420..577918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size321
Model size3499
Exons1
Ec32 orthologEc-27_001220.1
Ec32 ortholog descriptionAt2g23090 like
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2DZSG@1,2SCN8@2759
EggNOG free text desc.Zinc-binding
Seed eggNOG ortholog2880.D7FU30
Seed ortholog evalue1.5e-12
Seed ortholog score79.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17453.1prot_E-siliculosus-1a_M_contig94.17453.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 574907..575227 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936506.073356-UTR-E-siliculosus-1a_M_contig94:574419..5749061622936506.073356-UTR-E-siliculosus-1a_M_contig94:574419..574906Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 574420..574906 +
1696251108.8342125-UTR-E-siliculosus-1a_M_contig94:574419..5749061696251108.8342125-UTR-E-siliculosus-1a_M_contig94:574419..574906Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 574420..574906 +
1622936506.1020567-UTR-E-siliculosus-1a_M_contig94:575227..5779181622936506.1020567-UTR-E-siliculosus-1a_M_contig94:575227..577918Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 575228..577918 +
1696251108.8671644-UTR-E-siliculosus-1a_M_contig94:575227..5779181696251108.8671644-UTR-E-siliculosus-1a_M_contig94:575227..577918Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 575228..577918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936506.0875108-CDS-E-siliculosus-1a_M_contig94:574906..5752271622936506.0875108-CDS-E-siliculosus-1a_M_contig94:574906..575227Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 574907..575227 +
1696251108.8482854-CDS-E-siliculosus-1a_M_contig94:574906..5752271696251108.8482854-CDS-E-siliculosus-1a_M_contig94:574906..575227Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 574907..575227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17453.1

>prot_E-siliculosus-1a_M_contig94.17453.1 ID=prot_E-siliculosus-1a_M_contig94.17453.1|Name=mRNA_E-siliculosus-1a_M_contig94.17453.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=107bp
MGGGNAQKSATARARNEAKKAKAGKGSQLAVNKAAQSIVCQVCFITQNGT
STSHYISAVMCPRAHQTRRVWVFPLFSWQMRSRWHVCRLQGELALRNVES
LDICSP*
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mRNA from alignment at E-siliculosus-1a_M_contig94:574420..577918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17453.1 ID=mRNA_E-siliculosus-1a_M_contig94.17453.1|Name=mRNA_E-siliculosus-1a_M_contig94.17453.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3499bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:574420..577918+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GACGTGTTGAACCTGCCTCTTCTCTCTCCCCCAAGGTGAGCTAACCGGCG
CGAACGGCTAGCCTAAACCCGAAAACAGGTGTTGGCGTTGGTATATTTCT
GTGTGGGCGCCTCTCGTTCTGTGTTGCTTTACTTTTTGGTCCAAGAAAGC
GCGGCGTATTTGCAGACGACGACACGACCATCACCCACAGCAGCAAGTGC
TTGATGGTGGCCCCGCTGCTTACAGACCATCGCTGACGCTGTTCAGATCA
AGAGAGAGCTTCGGCTGCTCTCTATTTACCCTCTGTATCTAGTCGCATCG
TTTCTCTTGTGCTATGTAGTTCCAAAACCTACCAATCTTTCTCTACTACA
GAGTATAGAGAGAGGTGGTTGCCTACGTAAGCAAGGGAGAGCACCCGGAT
CTCTCTTACAGCAGTAAAGGCCACCCTCGCTCGCCTCTCTGCAACCACGA
TCCCGTCGCAGTCTTGTGAACCGGACTCAAACAAGCCATGGGAGGAGGAA
ACGCCCAGAAGTCGGCCACCGCCCGCGCGCGGAACGAGGCGAAGAAGGCC
AAGGCCGGAAAGGGGTCTCAGCTTGCAGTCAACAAGGCCGCACAGAGCAT
CGTCTGCCAGGTGTGTTTTATTACACAAAATGGTACTTCTACATCTCACT
ACATCTCAGCCGTGATGTGTCCACGCGCGCACCAAACGAGGCGCGTGTGG
GTGTTTCCTCTATTTTCATGGCAGATGAGATCCAGATGGCACGTCTGCCG
TTTACAGGGAGAGCTTGCGTTACGTAACGTAGAAAGCTTGGACATTTGTT
CGCCATAGGCGGGCTTTGCACACATTCCAGCAGCGCCGAAAATGTGATCG
TTTTTTTTTGCGTTACACCGGGACGGACGTTTCTGCCTGTTGTTCGGCAC
CGCTGCAGTAGGCCTACCATGCATTAGAACCCGGGAGATGTCATTGCCGA
CTGGCGGCAAGCAATAAAAGGAAGGACTCGCTACAAGAAACAGCCTTTAA
CTTTCGATCCCTTGCTGTTGCCCCCTCGGCTCTTGGAGGTTCGACGTTAT
TTCTTTCACGGCAGTGGGTGTCCCCGAAGGAAGGGGGTGGTGGGGTAGCT
GATAACGACCGCCTTTAACGGCCTCTCGTTTAATGTTTAGGACAACATAT
TGTTTATGCCAGCCAATTTTCACCGCCTTGTTTTAAAGGGCGACCGCCTT
TGATTCATACCGCCTTATTCCGGAACCCCCATGGTACAGGCTTCTGCTTC
AGACCCGAGATACAGCCTGTAGTATTGCTGTATGCATAGAATGACTGCAA
CGATTTTCTTTGGATTGTTCTTGTCGAAGGCTGTTGGCTCACGTTAGTTC
CGCTTCTTCTCTGACCAACGCGACACCATGACCACAATTTTCTCTCTCTC
GCCACTATTTCATGTCGGCTGTCTTAGCGATCAGGTGTATCCGAAGGACG
CCCCGTCACCGGAGGTAGTCAGAATCCTCTAAACAACTGGGCTCGAATAT
CTTCGCTCGCACCGCCCTTGATAACGCCCGTTTTTGACAATTTGTGAACT
GCTGTTTTTCTCCCCGTGTGTGGTAACCGGGTGTTTAACTTGTGGTGTGT
GGACTTGGCCAATGGGAAGTCACATGTTATTAGGTAATCAGCCCCTCGTT
GGGGATGGAGTCCTGACATGGATCAATTGCCAATGCAGTCTTCGAGCTTT
CTCCGCTCATCGGCGTTCTGTAAGCGTCTCTTTGGACAGTTCAGACGGCC
CAGGGAGGCAGGTCATTTACGACCTCAATGCATCTTGATGCACATATTTT
TTGTCCTGAAGCTCGTTCCGTTCTACAGCAAGTAACATATACCAAAGCAC
CACTTAATTCCCCCGGGACTGTCGTTTATATCTTGAGATGTTCCCTGAGA
AGCAACATTAGCACCCCTCTTTCTCTTTGTCCCTCCTCTCTCTCTAAAAT
CAAACTACATATTTACGACCCCTCCCTCCAGGTCTGCCGCCAGTCGTTCA
TGTCCGTGTCCAACGACGCCATGCTCACAGACCACGTGACGGCCAAGCAT
AACAAGAAGAAGACCCCGGCCGAGTGCTTTCCGGGACGGCTGAGCTGATC
TACCTATCGTCGTGTTCTTATTTCCTCGCGTTATCTCCCACGGCAAACGA
GAACGCACGGGACAAGGAGGGCCACCTTTCTTCCAGGGTGGGGGGAAAAG
TTCACCGTTCCGCACAAGGACATGCGGGAAGAAGATGGTTTGAGTTCACC
ATTCCGCACAAGGGCATGGCTGGAGTTCACCACTCCGCACAAGGGCTTTG
GTGGCTATTTTGGTGGCTTTGGTGTTAATTTTCGGGGACAAGTTGTGCGG
GGATGAAAAAAATGCTACATATGTTCTCCGGCGGCATCCTCTTTTTTTTT
TGTGTTTTGTAGAGGTGGGGCCCGTGGAGCAGACACACGGGCGGCTGAGC
CTGACTTAAGAGCGCAGCGGTTGTGTGAGCAGGTGTTTTTGTTAGGGGGT
GAGTGAGAGGTTCGGACCGATTTCGCATATGTGCTCGCTGGTGTTGATAT
TTGCTGCGGATCCATGTGCGCGGTATTGTACGAAAAAGGAGAGCTCCCTT
TTGGAGGAAGATTGGTTGGGGGGTTGGGCCTGGTGGTGACAAGTGCTGGC
GGTGGAGTAAGCATGTGTAAAATTGGATTGAAGAGGAAACGGCCCTGAGA
AAGCGTGGAGAGTCTCCGGATTGGTTGCTTCCATTTCCGGGATACCTGTT
TTCATTACCGCGTGCTGGAGGAGTTGTAGTTCGTGCCGCACCGTCCGTGG
CCGCTTGTCCTTGGCGGGAAAGGCCAACACCCCTCGCAAGCATCGCTGCG
ATGCCACCCTCACCCCCCTCCCCCGGGGCGGACGCGTAAATTGTAGGGCT
TCCTAAAATAAATGCTAAATTGAAAGCTATTGATAGGTGACGAAATTGAG
AGATAGGTCCAGCTCGAGGCTGTGTCTGCAGGACCTGCCTAAAACATTAT
TTTCTTTGGAGTTGGGCACATTCCGCCGGCATCGCCGTCTGCGTTCCTCC
ATTGGCCCGTGTAGCTTTAGGGTGTGGTGACTCCTTTGACGGCTCCTCCT
TGTGAATATCTATTGCAGAAACATGACGGCAGCATCTGGGCCAGGTCAGA
GCGCAAAACTGGCCACTGGAGAGCAAGTTTGAAGGGCCGTTCCCACTGCA
AAATGCGAACATAGGGATGTTTCCTTCCAAGTAGAAGGTGAAACCAAACG
AAGCGCTGTGCTAGTCGAATCGGTTTCTAGTGTTGGATATAATGGTGTAG
GAGCGCAACTGCTCTTGGTTGTACCCAAGCCGGTCGATCGTTTCCGACGA
CCGCCAGCTGTTGTTTTTTCCCGAAGCCTGTGCTGCAACGAACGGCAGAA
ATTACTGCGCGTGTTGTTCGAATTTGTTGTGTTGGGACTTCTCAGCCAGC
AAATTCCCAAGCTCGGTAGAGCTTGGGTCGCTGCTGTCGGCCGTTAGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:574420..577918+

>mRNA_E-siliculosus-1a_M_contig94.17453.1 ID=mRNA_E-siliculosus-1a_M_contig94.17453.1|Name=mRNA_E-siliculosus-1a_M_contig94.17453.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:574420..577918+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGAGGAGGAAACGCCCAGAAGTCGGCCACCGCCCGCGCGCGGAACGA
GGCGAAGAAGGCCAAGGCCGGAAAGGGGTCTCAGCTTGCAGTCAACAAGG
CCGCACAGAGCATCGTCTGCCAGGTGTGTTTTATTACACAAAATGGTACT
TCTACATCTCACTACATCTCAGCCGTGATGTGTCCACGCGCGCACCAAAC
GAGGCGCGTGTGGGTGTTTCCTCTATTTTCATGGCAGATGAGATCCAGAT
GGCACGTCTGCCGTTTACAGGGAGAGCTTGCGTTACGTAACGTAGAAAGC
TTGGACATTTGTTCGCCATAGATGGGAGGAGGAAACGCCCAGAAGTCGGC
CACCGCCCGCGCGCGGAACGAGGCGAAGAAGGCCAAGGCCGGAAAGGGGT
CTCAGCTTGCAGTCAACAAGGCCGCACAGAGCATCGTCTGCCAGGTGTGT
TTTATTACACAAAATGGTACTTCTACATCTCACTACATCTCAGCCGTGAT
GTGTCCACGCGCGCACCAAACGAGGCGCGTGTGGGTGTTTCCTCTATTTT
CATGGCAGATGAGATCCAGATGGCACGTCTGCCGTTTACAGGGAGAGCTT
GCGTTACGTAACGTAGAAAGCTTGGACATTTGTTCGCCATAG
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