mRNA_E-siliculosus-1a_M_contig94.17450.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17450.1 vs. uniprot
Match: D8LN18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN18_ECTSI) HSP 1 Score: 1344 bits (3479), Expect = 0.000e+0 Identity = 1013/1419 (71.39%), Postives = 1029/1419 (72.52%), Query Frame = 1
Query: 169 MASAREFSSRXXXXXXXXXXXXXXXXKPSRSTPRRXXXXXXXXXXXXXSDDEAQEETHATIGRDAAATMRQADAGIGARRVLEFARGDAALRESAAALSGGTAESWMSXXXXXXXEEGLGLLRQQLSAVQRIRIEHERKDATIAALRLEVSTLSRQREEMLALXXXRNGELLRLVRMEETVRRLEEGERDTXXXXXXXXXXXXXXXXXXXXQCRAERDRAEELAALEPALAKAKXXXXXXXXXXTRDEAGRAEAEFRAGTITERLNAEMERERAKSRGLEDKLRMLEEELAGANRLIPEVKSLQEANETLRAELAVASERRSEVELELAQLKVYRPLVERADSIDRRRIAAEEGLRAATAELSRERDALAAAKDGAAELRLALERRGLRLAEAEAEASKALSLERDLLSATGRLEAAQAARADAESSRRENASALAEXXXXXXXXXXXXXXXXXXXXXXXRIXXXXXXXXXGCGRSGDTRSAAVXXXXGLEGGVRQRGEGPRAEVDGGDGDGDRKTGRKDXXXXXXXXXXRVEAGRCSDGVARAARAVRALAEAGMAAAADRDHATKELVDAQGDLRSALDRLEASQREGTGVRRALEDACAARSALLPRLRDTQVSRAAAEAAADRASAELADIRGFLVELSALLARSNAETTSDGDASPGWSTNGSSTIPPSASDAPGAGAG--GCAKVVAAISAGVKGLLAERTVAASALRELDNRFSQGKREAEEASADARDRDTAHREQLVELRSWCESEVEAQRRAKKAAQTAADCALRDLSTARRLISGFEKEKSRISGHAAALNARLSTITEEASAAKTGLRLLARACWPLLERCRLLAEHKRLLAKWHGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPGAGGRGDGVRGDXXXXXXXXXXXXXXGSQQPTTVLIIDGLRSLVEALSQDGDEEEGQAERGXXXXXXXXXSFAPASRAHGIPRRPGSSEGGDGCGEVRDAAGNVHYHQHHDKRQQRRPLVSLRATCIAAVAAQRLVRLAACRASQREAXXXXXXXXXXXXXXXXXXXXXXXXAGGRPGPSRDGDAGIGEDIIPLGPRGSGGXXXXXXGVPMLLDTQVVSPASMSLASMSLLADHSKDGTGDPSQAGGVACRSDGGXXXXXXXXXXD-GERCMGLLGALVVVDAGNVSSVGTGXXXXXXXAAATGEWLGRGGGGTPVVTGAARDAAGRTSLLEVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGQDVWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEVEALEASKQALRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASALRKREARQARKGAQVANQEKAI 4416
M S RE S XXXXXXXXXXXXXXXXK SRSTPRRXXXX XX X SDDEAQE T TIGRDAAA MRQADAGIG RRVLEFARGDAALRESAAALSGGTAESWMS EEGLGLLRQQLSAVQRIRIEHERKDATIAALRLE S + +R R EE R+ QCRAERDRAEELAALEPALAKA+ XXXXX RDEAGRAEAEFRAGTITERLNAEMERERAKSRGLEDKLR+LEEELAGANRLIPEVKS+Q ANE LRAEL VASERRSEVELELAQLKVYRPLVERAD IDRRR+AAEEGLRAATAELSRERDALAAAKDGAAELRLALERR EXXXXXXXXXXXXXXXXXXXXXXX L DIRGFLVELSALLARSNAE SDG+ASPGWSTNGSSTIPPSASDAPGAGAG GC KVVAAISAGVKGLLAERTVAASALRELDNRFSQGKREAEEASAD RDRDTAHREQLVELRSWCESEVEAQRRAK+AAQTAADCALRDLSTARRLIS FEKEK+RISG+A ALNARLST+TEEASAAK GLRLLARACWPLLERCRLLAEHKRLLAKWH SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX GSQQPT VLIIDGLRSLV+ALSQDGDEEEGQA RG APASRAHG PRRPGSSEGG GCGEV D AGNVH HQHHDKRQQRRPLVSLRATCIAAVA QRLVRLAACRAS+REAXXXXXXXXXXXXXXXXXXXXX AGGRP PSR GDAGIGE IIPLGPRGSGG GVPMLLDTQVVSP SMSLA MSLL DHSKDGTGDPSQAGGVACR DGGXXXXXXXXXX GERCMGLLGALVVVDAGN+SS AAATGEW GRG GT V TGAARDAAGRTSLLEVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGQDVWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEVEALEASKQALRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASA RKREARQARKGAQVANQEK +
Sbjct: 1 MESVRESSXXXXXXXXXXXXXXXXXXKTSRSTPRRXXXXPRXXTXTPTSDDEAQE-TRPTIGRDAAAYMRQADAGIGTRRVLEFARGDAALRESAAALSGGTAESWMSGSGGGGDEEGLGLLRQQLSAVQRIRIEHERKDATIAALRLEASADTARR----------------CTREEEAWRK---------------------QLRDMQEQCRAERDRAEELAALEPALAKARSEAVAXXXXXARDEAGRAEAEFRAGTITERLNAEMERERAKSRGLEDKLRVLEEELAGANRLIPEVKSIQGANEALRAELVVASERRSEVELELAQLKVYRPLVERADFIDRRRVAAEEGLRAATAELSRERDALAAAKDGAAELRLALERR--------------------------------------------------EXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGDIRGFLVELSALLARSNAEAASDGEASPGWSTNGSSTIPPSASDAPGAGAGAGGCVKVVAAISAGVKGLLAERTVAASALRELDNRFSQGKREAEEASADTRDRDTAHREQLVELRSWCESEVEAQRRAKRAAQTAADCALRDLSTARRLISDFEKEKARISGNAVALNARLSTVTEEASAAKNGLRLLARACWPLLERCRLLAEHKRLLAKWHDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXPGSQQPTMVLIIDGLRSLVDALSQDGDEEEGQAGRGLGSENGGGDPPAPASRAHGTPRRPGSSEGGGGCGEVGDTAGNVHNHQHHDKRQQRRPLVSLRATCIAAVAVQRLVRLAACRASRREAXXXXXXXXXXXXXXXXXXXXXTA-AGGRPSPSRHGDAGIGEAIIPLGPRGSGGGSGGG-GVPMLLDTQVVSPGSMSLALMSLLGDHSKDGTGDPSQAGGVACRGDGGXXXXXXXXXXXXGERCMGLLGALVVVDAGNISS-----------AAATGEWFGRGFEGTAVETGAARDAAGRTSLLEVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGQDVWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEVEALEASKQALRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASAQRKREARQARKGAQVANQEKVV 1143
BLAST of mRNA_E-siliculosus-1a_M_contig94.17450.1 vs. uniprot
Match: A0A6H5KPE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPE9_9PHAE) HSP 1 Score: 631 bits (1627), Expect = 1.480e-202 Identity = 469/565 (83.01%), Postives = 478/565 (84.60%), Query Frame = 1
Query: 2425 EVEAQRRAKKAAQTAADCALRDLSTARRLISGFEKEKSRISGHAAALNARLSTITEEASAAKTGLRLLARACWPLLERCRLLAEHKRLLAKWHGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPGAGGRGDGVRGDXXXXXXXXXXXXXXGSQQPTTVLIIDGLRSLVEALSQDGDEEEGQAERGXXXXXXXXXSFAPASRAHGIPRRPGSSEGGDGCGEVRDAAGNVHYHQHHDKRQQRRPLVSLRATCIAAVAAQRLVRLAACRASQREAXXXXXXXXXXXXXXXXXXXXXXXXAGGRPGPSRDGDAGIGEDIIPLGPRGSGGXXXXXXGVPMLLDTQVVSPASMSLASMSLLADHSKDGTGDPSQAGGVACRSDGGXXXXXXXXXXDGERCMGLLGALVVVDAGNVSSVGTGXXXXXXXAAATGEWLGRGGGGTPVVTGAARDAAGRTSLLEVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGQDVWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEV 4119
+VEAQRRAKKAAQTAADCALRDLSTARRLISGFE+EKSRISG+AAALNARLSTITEEASAAK GLRLL RAC PLLERCRLLAEHKRLLAKWHGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX TVL+IDGLRSLV+AL QDGDEEEGQA G S APASR HG PRRPGS EGG GCGEV D AGNVHYHQ+HDKRQQRRPLVSLRATCIAAVA QRLV XXXXXXXXXXXXXXXXXXXXXX AGGRP PS GDAGI EDIIPLGPRGSGG GVPMLLDTQVVSPASMSLA MSLLAD SKDGTGDPSQAG VACRSDGGXXXXXXXX DGERCMGLLGALVVVDAGNVSS XXXXXXX A GEW RG GT VVTGAARDAAGRTSLL+VLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHG +VWKA QERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAE+
Sbjct: 20 QVEAQRRAKKAAQTAADCALRDLSTARRLISGFEEEKSRISGNAAALNARLSTITEEASAAKAGLRLLVRACLPLLERCRLLAEHKRLLAKWHGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXTVLMIDGLRSLVDALRQDGDEEEGQAGGGLGSNNGRGGSPAPASRTHGTPRRPGSCEGGGGCGEVGDMAGNVHYHQNHDKRQQRRPLVSLRATCIAAVAVQRLVXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGRPSPSPHGDAGIREDIIPLGPRGSGGGSSGG-GVPMLLDTQVVSPASMSLALMSLLADLSKDGTGDPSQAGCVACRSDGGXXXXXXXX--DGERCMGLLGALVVVDAGNVSSXXXXXXXXXXXXA--GEWFTRGDKGTAVVTGAARDAAGRTSLLQVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGPEVWKARQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEI 571
BLAST of mRNA_E-siliculosus-1a_M_contig94.17450.1 vs. uniprot
Match: A0A6H5KR29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR29_9PHAE) HSP 1 Score: 258 bits (658), Expect = 1.480e-75 Identity = 154/162 (95.06%), Postives = 156/162 (96.30%), Query Frame = 1
Query: 4147 LRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASALRKREARQARKGAQVANQEKAIRAQLQDELLSLRSYVLRSEQTVQELQEQARRQAREQGRYTDSSGGDSSGRNNDLHQPFLAVADRAAAAEGLF 4632
+RVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTE+ALTESLAEVETLRVRSASLYAELAEASA RKREARQARKGAQVANQEKAIRAQLQDELLSLRSYVLRSEQTVQELQEQARRQAREQGRYTDSSGGDSSGRNN QPFLAVAD AAA EGLF
Sbjct: 1 MRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTERALTESLAEVETLRVRSASLYAELAEASAQRKREARQARKGAQVANQEKAIRAQLQDELLSLRSYVLRSEQTVQELQEQARRQAREQGRYTDSSGGDSSGRNNHRDQPFLAVADHAAA-EGLF 161
BLAST of mRNA_E-siliculosus-1a_M_contig94.17450.1 vs. uniprot
Match: A0A6H5L4I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I7_9PHAE) HSP 1 Score: 162 bits (409), Expect = 1.620e-41 Identity = 156/176 (88.64%), Postives = 160/176 (90.91%), Query Frame = 1
Query: 1357 ASKALSLERDLLSATGRLEAAQAARADAESSRRENASALAEXXXXXXXXXXXXXXXXXXXXXXXRIXXXXXXXXX--GCGRSGDTRSAAVXXXXGLEGGVRQRGEGPRAEVDGGDGDGDRKTGRKDXXXXXXXXXX-RVEAGRCSDGVARAARAVRALAEAGMAAAADRDHATKEL 1875
ASKALSLERDL+SATGRLEAA+AARADAE SRRENASALAEXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX GCGR GD XXXX LEGGVRQRGEGPRAEVDGGDGDG+RKT RKD XXXXXXXXX RVEAGRCSDGVARAARAVRALAEAGMAAAADRDHATK+L
Sbjct: 7 ASKALSLERDLISATGRLEAAEAARADAEGSRRENASALAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGRIGDXXXXXXXXXXXLEGGVRQRGEGPRAEVDGGDGDGERKTRRKDVXXXXXXXXXXRVEAGRCSDGVARAARAVRALAEAGMAAAADRDHATKKL 182 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17450.1 >prot_E-siliculosus-1a_M_contig94.17450.1 ID=prot_E-siliculosus-1a_M_contig94.17450.1|Name=mRNA_E-siliculosus-1a_M_contig94.17450.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1489bp MASAREFSSRRRRQHPPITTTAATTSKPSRSTPRRRRRQPRPPTPTPTSDback to top mRNA from alignment at E-siliculosus-1a_M_contig94:542186..559339+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17450.1 ID=mRNA_E-siliculosus-1a_M_contig94.17450.1|Name=mRNA_E-siliculosus-1a_M_contig94.17450.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=17154bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:542186..559339+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:542186..559339+ >mRNA_E-siliculosus-1a_M_contig94.17450.1 ID=mRNA_E-siliculosus-1a_M_contig94.17450.1|Name=mRNA_E-siliculosus-1a_M_contig94.17450.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=8934bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:542186..559339+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |