mRNA_E-siliculosus-1a_M_contig94.17446.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17446.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17446.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17446.1 vs. uniprot
Match: D8LN14_ECTSI (CAF1C_H4-bd domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN14_ECTSI)

HSP 1 Score: 823 bits (2126), Expect = 6.400e-292
Identity = 502/550 (91.27%), Postives = 507/550 (92.18%), Query Frame = 2
Query:   62 MGKKTAGSKTATPRKVDISPASPTSQSTSKRQRSGEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFEDPFGDEFDPEDIDAINAEPEEDGDSDDGGMDAETGEAAASGSSTAATDAEGAAAPQETKVWRAGVDELAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGSNDXXXXXXXXXXXXXXXXXPTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDVHVWDLEEQVSALAAKGAPRKSKVDPAFTFDGHMEASATEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVEDLQWSPTETTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSXXXXXTDESMLAVSGADNQLTVWDLSVEADDEAAAGMAGAGXXXXAGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPATTV 1711
            MGKKTAGSKTATPRKVDISPASPTSQSTSKRQRSGEDA            XXXXXXXXXXXXXXX LVFEDPFGDEFDPEDIDA+NAEPEEDGD DDGGMDAETG+AAASGSSTAATDAEGAAAPQETKVWRAGVD+LAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGS+ XXXXXXXXXXXXXXXX PTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDV+VWDLEEQVSALAAKGAPRKSKVDPAFTFDGHME    EGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASV         TTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITS     TDESMLAVSGADNQLTVWDLSVEADDEA        XXXX GGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPATTV
Sbjct:    1 MGKKTAGSKTATPRKVDISPASPTSQSTSKRQRSGEDAATSTAKKVAPHAXXXXXXXXXXXXXXX-LVFEDPFGDEFDPEDIDAMNAEPEEDGDDDDGGMDAETGDAAASGSSTAATDAEGAAAPQETKVWRAGVDDLAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGSDXXXXXXXXXXXXXXXXXDPTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDVYVWDLEEQVSALAAKGAPRKSKVDPAFTFDGHME----EGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVXXXXXXXXXTTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSIEWHPTDESMLAVSGADNQLTVWDLSVEADDEAXXXXXXXXXXXXXGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPATTV 545          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17446.1 vs. uniprot
Match: A0A836CN53_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN53_9STRA)

HSP 1 Score: 436 bits (1121), Expect = 5.120e-142
Identity = 273/440 (62.05%), Postives = 318/440 (72.27%), Query Frame = 2
Query:  413 DAEGAAAPQETKVWRAGVDELAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGSNDXXXXXXXXXXXXXXXXXPTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDVHVWDLEEQVSALAAKGAPRKSKVDPAFTFDGHMEASATEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGG-WVTDPVPFVGHVASVEDLQWSPTETTVFASASADKTVAVWDLRKKNGAMLSL-KAH-EEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSG--EPVAQFRWHKAPITSXXXXXTDESMLAVSGADNQLTVWDLSVEADDEAAAGMAGAGXXXXAGGLKDL--PPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPATTV 1711
            D E A    E + +R G+DE+ EG+E+EYD +AYHMYHSLRPEWPCLSFD IRD LG NR RYPH VFAVAGTQA R   N++QVMKL+DLH+T  +K   D    XXXXXXXX         P LDHI+I H GG+NR+RSMPQ+PGVVA+WSE   V++ D+  QV+AL  KG PR +     +TF GH +    EGFA+DWS   EGRL TG CG  +HV    EGG W TD    +GH ASVE+LQWSPTE TVFASASAD +VA+WD R+    MLS+ +AH  +DVNV  XXXXXXXXXXXXXXXXXXXXXXXX+FG    EPVAQF WHKAPITS      DESMLAV+GADNQ+TVWDLSVEADD    G    G     GG+ +L  PPQLLF+HQGQ DIKELHFHPQ+PGVIM+TA DGFN++KPAT +
Sbjct:    4 DVEQAEPQSEVRTFRPGLDEVPEGEEMEYDPSAYHMYHSLRPEWPCLSFDFIRDKLGTNRVRYPHIVFAVAGTQAARGQPNKIQVMKLADLHKT--QKLSADDEEXXXXXXXXXNDVE-----PMLDHIDIAHNGGINRIRSMPQQPGVVASWSEKGSVYLTDVTHQVNALD-KGGPRDTVATSLYTFKGHPD----EGFAMDWSRVAEGRLLTGCCGGHIHVHEPQEGGAWATDQQASLGHTASVEELQWSPTEHTVFASASADGSVAIWDTRRWAKPMLSIDQAHGSQDVNVMSXXXXXXXXXXXXXXXXXXXXXXXXSFGKATPEPVAQFSWHKAPITSIEWDPNDESMLAVAGADNQVTVWDLSVEADDGDLVG----GPNRDLGGIAELKLPPQLLFVHQGQHDIKELHFHPQVPGVIMTTALDGFNVWKPATVL 427          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17446.1 vs. uniprot
Match: A0A0P1AE81_PLAHL (Glutamate-rich wd repeat-containing protein 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE81_PLAHL)

HSP 1 Score: 409 bits (1050), Expect = 1.220e-130
Identity = 236/420 (56.19%), Postives = 297/420 (70.71%), Query Frame = 2
Query:  446 KVWRAGVDELAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGSNDXXXXXXXXXXXXXXXXXPTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDVHVWDLEEQVSALAAK-GAPRKSKVDPAFTFDGHMEASATEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVEDLQWSPTETTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSXXXXXTDESMLAVSGADNQLTVWDLSVEADDEAAAGMAGAGXXXXAGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPA 1702
            KV+  GVD+L E + L+YDS+AY MY++L  EWP LS DV+RDSLGA RSR+P T+F VAGTQA   D+N++ VMK+S+L++T +     D  +D                 P L+  +IPH GGVNR+R MPQ P +VATWS+   VH+WD+ +Q+ +L  K G P  +K  P ++F GH +    EGFA+DWSP E GRL TGDC   +++  + +GGW  D VPFV H +SVEDLQWSPTE +VFAS S+D++V +WD+R+K G+ML + AH++    XXXXXXXXXXXXXXXXXXXXXXXXX  F +  PVA FR+H APITS     TDES+LAVSGADNQ++VWD+SVE D EAA  + G           DLPPQLLFIHQGQTDIKELHFHPQ PGV+MSTA DG+N+FKPA
Sbjct:   80 KVFMPGVDKLQEDEMLDYDSSAYDMYYALTAEWPALSIDVVRDSLGAVRSRFPMTIFMVAGTQASNPDDNQVTVMKMSELYKT-KNNDASDSEDDGKDDEDETDGD------PVLETRSIPHSGGVNRIRCMPQVPNIVATWSDRKKVHLWDISKQLESLDGKVGGPLPTKQMPVYSFTGHTD----EGFAMDWSPVEAGRLVTGDCSKFIYLWASSDGGWSIDKVPFVRHKSSVEDLQWSPTEASVFASCSSDRSVRIWDVRRKAGSMLDITAHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKADNPVAHFRYHTAPITSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAAVTVQGEKDNRKL----DLPPQLLFIHQGQTDIKELHFHPQCPGVLMSTAGDGYNVFKPA 484          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17446.1 vs. uniprot
Match: A0A8J4WG55_9STRA (CAF1C_H4-bd domain-containing protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4WG55_9STRA)

HSP 1 Score: 416 bits (1068), Expect = 5.800e-130
Identity = 270/482 (56.02%), Postives = 331/482 (68.67%), Query Frame = 2
Query:  260 LVFEDPFGDEFDPEDIDAINAEPEEDGDSDDGGMDAETGEAAASGSSTAATDAEGAAAPQETKVWRAGVDELAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGSNDXXXXXXXXXXXXXXXXXPTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDVHVWDLEEQVSALAAK-GAPRKSKVDPAFTFDGHMEASATEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVEDLQWSPTETTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSXXXXXTDESMLAVSGADNQLTVWDLSVEADDEAAAGMAGAGXXXXAGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPA 1702
            LVFEDPFGD+ + E++       E DGD +   +D E  +           D E  +     KV+  GVD+L + + L+YDS+AY MY+++  EWP LS DV+RD+LGA RSR+P TVF VAGTQA  AD N+L VMK+S+LH+T         +NDXXXXXXXXXXXXX    P L+  +IPH GG+NRVR MPQ   +VATWS+   VH+WD+ +Q+ +L  K GAP  +K  P +TF GH    A EGFA+DWSP + GRL TGDC   +++    EG W  D VPF GH +SVEDLQWSPTET+VFAS S+D+TV +WD R+K G+ML + A       XXXXXXXXXXXXXXXXXXXXXXXXX  F +  PVA FR+H AP+TS     TDES+LAV+GADNQ++VWD+SVE D EAA  +AG           DLPPQLLFIHQGQTDIKELHFHPQ PGV+MSTA DGFN+FKPA
Sbjct:  288 LVFEDPFGDDMEDEEM------IESDGDEE--VVDTEATD------KDVEMDGEEDSDKSVKKVFMPGVDKLQDDEVLDYDSSAYDMYYAMTAEWPSLSIDVVRDNLGAVRSRFPMTVFMVAGTQASNADENQLTVMKMSELHKTKH-------NNDXXXXXXXXXXXXXTEGDPVLESRSIPHPGGINRVRCMPQSSNIVATWSDRKKVHLWDIAKQLESLDGKAGAPLPAKQSPVYTFSGH----ADEGFAMDWSPVQAGRLVTGDCSKFIYLWANSEGAWNVDKVPFTGHKSSVEDLQWSPTETSVFASCSSDRTVRIWDTRRKAGSMLDVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKADNPVAHFRYHTAPVTSIEWHPTDESVLAVAGADNQISVWDMSVEEDAEAAVPVAGENGEAKL----DLPPQLLFIHQGQTDIKELHFHPQCPGVLMSTAGDGFNVFKPA 740          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17446.1 vs. uniprot
Match: A0A5D6XZ36_9STRA (CAF1C_H4-bd domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ36_9STRA)

HSP 1 Score: 405 bits (1042), Expect = 7.350e-126
Identity = 245/423 (57.92%), Postives = 303/423 (71.63%), Query Frame = 2
Query:  437 QETKVWRAGVDELAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGSNDXXXXXXXXXXXXXXXXXPTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDVHVWDLEEQVSALAAK-GAPRKSKVDPAFTFDGHMEASATEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVEDLQWSPTETTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSXXXXXTDESMLAVSGADNQLTVWDLSVEADDEAAAGMAGAGXXXXAGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPA 1702
            Q  +V+  GVD+L E + L+YDS+AY MY+++  EWP LSFD++RD+LGA R+R+P TV+ VAG+QA   D N+L +MK+S+LH+T         S D  XXXXXXXXXX     P L++ +IPH+GG+NRVR+MPQ   +VATW++T  VH+WD+ +Q+ +L  K GAP  +K  P FTF GH    A EGFA+DWSP + G+L TGDC   ++     E  W  D VPF GH ASVEDLQWSPTE TVFAS SAD+TV +WD R+K G+ML + AHE+    XXXXXXXXXXXXXXXXXXXXXXXXX  F +  PVA FR+H APITS     TDES+LAVSGADNQ++VWD+SVE D EAAA +             DLPPQLLFIHQGQTDIKELHFH Q PGV++STA+DGFN+  PA
Sbjct:   83 QAKRVYMPGVDKLGEDEVLDYDSSAYDMYYAMTAEWPSLSFDILRDNLGAVRTRFPMTVYVVAGSQAANTDENQLTIMKMSELHKTKH-------SEDSEXXXXXXXXXXAVDGDPVLENRSIPHKGGINRVRAMPQYSNIVATWADTKKVHLWDVAKQLESLDGKAGAPLPAKQAPLFTFHGH----ADEGFAMDWSPVQAGKLVTGDCSKFIYAWSNAESAWSVDKVPFTGHKASVEDLQWSPTEATVFASCSADRTVRIWDTRRKAGSMLDVVAHEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKANSPVAHFRYHTAPITSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAAAEVHDPENPKV-----DLPPQLLFIHQGQTDIKELHFHSQCPGVLVSTASDGFNVMAPA 489          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17446.1 vs. uniprot
Match: W2Q8X3_PHYPN (CAF1C_H4-bd domain-containing protein n=14 Tax=Peronosporaceae TaxID=4777 RepID=W2Q8X3_PHYPN)

HSP 1 Score: 393 bits (1009), Expect = 1.510e-124
Identity = 260/482 (53.94%), Postives = 320/482 (66.39%), Query Frame = 2
Query:  260 LVFEDPFGDEFDPEDIDAINAEPEEDGDSDDGGMDAETGEAAASGSSTAATDAEGAAAPQETKVWRAGVDELAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGSNDXXXXXXXXXXXXXXXXXPTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDVHVWDLEEQVSALAAK-GAPRKSKVDPAFTFDGHMEASATEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVEDLQWSPTETTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSXXXXXTDESMLAVSGADNQLTVWDLSVEADDEAAAGMAGAGXXXXAGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPA 1702
            LVFEDPFGD  D ED + I +         DG  +   GEA+ S       D +  A  Q  KV+  GVD+L + + L+YDS+AY MY+++  EWP LS DV+ D+LGA RSR+P TVF VAGTQA  AD+N++ VMK+S+LH+T    +  DGS+  XXXXXXXXX       P L+  +IPH GGVNR+R MPQ   +VATWS+   VH+WD+ +Q+ +L  K GAP  +K  P +TF GH    A EGFA+DWSP + GRL TGDC   +++    EG W  D VPF GH +SVE         +VFAS S+D+TV +WD R+K G+ML + A       XXXXXXXXXXXXXXXXXXXXXXXXX  F +  PVA FR+H AP+TS     TDES+LAVSGADNQ++VWD+SVE D EAA  + G           DLPPQLLFIHQGQTDIKELHFHPQ PGV+MSTA DGFN+FKPA
Sbjct:   30 LVFEDPFGD--DMEDEEMIES---------DGDEEIVDGEAS-SADKDVDMDGDEQAEKQVKKVFMPGVDKLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVPDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT----KHNDGSDSEXXXXXXXXXTEGD---PVLESRSIPHPGGVNRIRCMPQSSNIVATWSDRKKVHLWDIAKQLESLDGKAGAPLPAKQAPVYTFSGH----ADEGFAMDWSPVQAGRLVTGDCSKFIYLWANSEGAWSVDKVPFTGHKSSVEXXXXXXXXXSVFASCSSDRTVRIWDTRRKAGSMLDVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKADNPVAHFRYHTAPVTSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAAVPVQGENGEAKL----DLPPQLLFIHQGQTDIKELHFHPQCPGVLMSTAGDGFNVFKPA 484          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17446.1 vs. uniprot
Match: A0A484E1J0_BRELC (CAF1C_H4-bd domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1J0_BRELC)

HSP 1 Score: 390 bits (1003), Expect = 1.100e-123
Identity = 253/482 (52.49%), Postives = 323/482 (67.01%), Query Frame = 2
Query:  260 LVFEDPFGDEFDPEDIDAINAEPEEDGDSDDGGMDAETGEAAASGSSTAATDAEGAAAPQETKVWRAGVDELAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGSNDXXXXXXXXXXXXXXXXXPTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDVHVWDLEEQVSALAAKG-APRKSKVDPAFTFDGHMEASATEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVEDLQWSPTETTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSXXXXXTDESMLAVSGADNQLTVWDLSVEADDEAAAGMAGAGXXXXAGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPA 1702
            L+FEDPFGD  D ED + I++E          G D     AAA+       D +  +  +  KV+  GVD+L + + L+YDS+AY MY+++  EWP LS DV+RD LG  RSR+P TV+ VAGTQA ++D+N++ VMK+S+L++T    +  + S+ XXXXXXX          P L+  +I H   VNR+R MPQ   +VATWS+   VH+WD+ +Q+ +L  KG A   +K  P +TF GH    A EGFA+DWS  + GRL TGDC   ++V    EG +  D VPF GH +SVEDLQWSPTE +VFAS S+D+TV +WD+R+K G+ML + AH+     XXXXXXXXXXXXXXXXXXXXXXXXXX F +  PVA FR+H AP+TS     TDES+LAVSGADNQ++VWD+SVE D EAA  +             DLPPQLLFIHQGQTDIKELHFHPQ PGV++STA DGFN+FKPA
Sbjct:   30 LIFEDPFGD--DMEDEEMIDSE----------GDDEVVDGAAANTDHDIDMDGDETSGSKAKKVFMPGVDKLEDDEVLDYDSSAYDMYYAMTAEWPALSIDVVRDKLGMVRSRFPLTVYMVAGTQATQSDDNQITVMKMSELYKT----KHSEASDSXXXXXXXDTEGE-----PVLETRSISHPSAVNRIRCMPQSSNIVATWSDRKKVHIWDISKQLDSLDGKGGAILPAKQSPVYTFSGH----ADEGFAMDWSSVQTGRLVTGDCSKFIYVWSNSEGAFNVDKVPFTGHKSSVEDLQWSPTEASVFASCSSDQTVRIWDIRRKAGSMLDVAAHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFKADHPVAHFRYHTAPVTSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAAKPVQSVDGETKL----DLPPQLLFIHQGQTDIKELHFHPQCPGVLISTAGDGFNVFKPA 482          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17446.1 vs. uniprot
Match: A0A024UF95_9STRA (CAF1C_H4-bd domain-containing protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024UF95_9STRA)

HSP 1 Score: 390 bits (1003), Expect = 1.330e-123
Identity = 254/491 (51.73%), Postives = 334/491 (68.02%), Query Frame = 2
Query:  260 LVFEDPFGDEFDPEDIDAINAEPEEDGDSD---------DGGMDAETGEAAASGSSTAATDAEGAAAPQETKVWRAGVDELAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGSNDXXXXXXXXXXXXXXXXXPTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDVHVWDLEEQVSALAAKG-APRKSKVDPAFTFDGHMEASATEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVEDLQWSPTETTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSXXXXXTDESMLAVSGADNQLTVWDLSVEADDEAAAGMAGAGXXXXAGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPA 1702
            LVFEDP+GD+ + E++ +       DGD +         +  MD ++G            D + A AP+  KVW   V++L E + L+YD++AY +Y+++  EWP LS D+I+D+LGA R+++P T++ VAG+QA +A +N++ VMK+S+LH+T         ++D  XXXXXXXXXXXXX  P L+  +I HRGGVNR+R+MPQ   +VATW++T  VH++D+ +Q+ +L  K  A   ++  P FTF GH    A EGFA+DWSP   G L TGDC   ++      G WV D VPF GH +SVED+QWSPTE TVFAS S+D+TV +WD+R K  +MLS++AH++    XXXXXXXXXXXXXXXXXXXXXXXXX  F S  PVA FR+H AP+TS     TDESMLAVSGADNQ+++WD+SVE D EAA                D+PPQLLFIHQGQTDIKELHFHPQ PG+++STAADGFN+FKPA
Sbjct:   32 LVFEDPYGDDLEDEEMVS-------DGDEEVVNNXXXXXENDMDVDSGNLP-----PLQNDDDEAEAPK--KVWLPNVEKLGEDEVLDYDASAYDLYYAMTAEWPALSLDIIKDNLGACRTKFPMTIYVVAGSQAPKAADNKITVMKMSELHKTKH-------NSDPDXXXXXXXXXXXXXGDPVLESRSIDHRGGVNRIRAMPQSSNIVATWADTKRVHIYDIAKQLQSLDGKNPAGLSAQAPPVFTFTGH----ADEGFAMDWSPVTAGSLLTGDCSKYIYHWVNNGGSWVVDKVPFTGHTSSVEDIQWSPTEATVFASCSSDRTVRIWDIRTKARSMLSVEAHDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKFQSDSPVAHFRYHTAPVTSIEWHPTDESMLAVSGADNQISIWDMSVEEDAEAANATTAK---------LDVPPQLLFIHQGQTDIKELHFHPQCPGLLVSTAADGFNVFKPA 488          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17446.1 vs. uniprot
Match: M4BTG4_HYAAE (CAF1C_H4-bd domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTG4_HYAAE)

HSP 1 Score: 385 bits (989), Expect = 1.390e-121
Identity = 259/484 (53.51%), Postives = 314/484 (64.88%), Query Frame = 2
Query:  260 LVFEDPFGDEFDPEDIDAINAEPEEDGDSDDGGMDAETGEAAASGSSTAATDAEG--AAAPQETKVWRAGVDELAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGSNDXXXXXXXXXXXXXXXXXPTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDVHVWDLEEQVSALAAKG-APRKSKVDPAFTFDGHMEASATEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVEDLQWSPTETTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSXXXXXTDESMLAVSGADNQLTVWDLSVEADDEAAAGMAGAGXXXXAGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPA 1702
            LVFEDPFGD+           E EE  +SDD       GE AA        D EG      Q  KV+  GVD+L + + L+YDS+AY MY+++  EWP LS DV+RD LG  RSR+P T+F VAGTQA   D N++ VMK+S+LH+T   K   D  +D XXXXXXXX        P L+  +IPH GGVNR+R MPQ   +VATWS+   VH+WD+ +Q+ +L  K  A   +K  P +TF GH    A EGFA+DWS  E GRL TGD    +++    E  W  D VPF GH +SVEDLQWS TE +VFAS S+D+TV +WD R+K G+ML +         XXXXXXXXXXXXXXXXXXXXXXXXX  F S  PVA FR+H AP+TS     TDES+LAVSGADNQ++VWD+SVE D EA   + G           DLPPQLLFIHQGQTDIKELHFHPQ PGV++STA+DGFN+FKPA
Sbjct:   30 LVFEDPFGDD----------VEDEEMVESDDENEKVVDGERAADND----VDMEGDEQTDKQAKKVFMPGVDKLQDDEVLDYDSSAYDMYYAMTAEWPSLSIDVVRDDLGPVRSRFPMTMFMVAGTQATVTDENQITVMKMSELHKT---KHNDDLDSDGXXXXXXXXTEGD----PVLESRSIPHTGGVNRIRCMPQSSNIVATWSDRQKVHLWDISKQLESLNGKASAALPAKQAPVYTFSGH----ADEGFAMDWSLVETGRLVTGDSSKFIYLWANSESTWTVDKVPFTGHKSSVEDLQWSVTEASVFASCSSDRTVRIWDTRRKAGSMLDVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKSDNPVAHFRYHTAPVTSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAVVPVDGENGEAKL----DLPPQLLFIHQGQTDIKELHFHPQCPGVLVSTASDGFNVFKPA 484          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17446.1 vs. uniprot
Match: A0A6G0XVI8_9STRA (CAF1C_H4-bd domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XVI8_9STRA)

HSP 1 Score: 382 bits (980), Expect = 3.310e-120
Identity = 229/421 (54.39%), Postives = 293/421 (69.60%), Query Frame = 2
Query:  443 TKVWRAGVDELAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRKKQRGDGSNDXXXXXXXXXXXXXXXXXPTLDHINIPHRGGVNRVRSMPQRPGVVATWSETSDVHVWDLEEQVSALAAKG-APRKSKVDPAFTFDGHMEASATEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVEDLQWSPTETTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSXXXXXTDESMLAVSGADNQLTVWDLSVEADDEAAAGMAGAGXXXXAGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPA 1702
            TKVW   V++L   + L+YD++AY +Y+++  EWP LS D+++D+LGA R+++P T++ V G+QA +A +N++ VMK+S+LH+T          ++   XXXXXXXXX     P L+   I HRGGVNR+R MPQ   +VATW++T  VH++D+ +Q+ +L  K  A   S+  P FTF GH    A EGFA+DWSP   G L TGDC   ++      G W  D VPF GH ASVED+QWSPTE +VFAS SADKTV +WD+R K  +ML + AH++    XXXXXXXXXXXXXXXXXXXXXXXXX  F +  PVA FR+H AP+TS     TDESMLAVSGADNQ+++WD+SVE D EAAA               D+PPQLLFIHQGQTDIKELHFHPQ PG+++STAADGFN+FKPA
Sbjct:   88 TKVWLPNVEKLGADEVLDYDASAYDLYYAMTAEWPALSLDIVKDNLGAVRTKFPMTIYVVTGSQAAKAADNKITVMKMSELHKTKH--------SEDSDXXXXXXXXXAEEGDPVLESRTIDHRGGVNRIRVMPQSSNIVATWADTKRVHIYDIAKQLQSLDGKNPAGMSSQAPPVFTFTGH----ADEGFAMDWSPVTAGSLLTGDCSKYIYHWVNNGGSWAVDKVPFTGHTASVEDIQWSPTEASVFASCSADKTVRIWDIRTKARSMLDVVAHDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKFQADSPVAHFRYHTAPVTSIEWHPTDESMLAVSGADNQISIWDMSVEEDTEAAAANTSK---------LDVPPQLLFIHQGQTDIKELHFHPQCPGLLVSTAADGFNVFKPA 487          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN14_ECTSI6.400e-29291.27CAF1C_H4-bd domain-containing protein n=2 Tax=Ecto... [more]
A0A836CN53_9STRA5.120e-14262.05WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A0P1AE81_PLAHL1.220e-13056.19Glutamate-rich wd repeat-containing protein 1 n=1 ... [more]
A0A8J4WG55_9STRA5.800e-13056.02CAF1C_H4-bd domain-containing protein n=1 Tax=Phyt... [more]
A0A5D6XZ36_9STRA7.350e-12657.92CAF1C_H4-bd domain-containing protein n=1 Tax=Pyth... [more]
W2Q8X3_PHYPN1.510e-12453.94CAF1C_H4-bd domain-containing protein n=14 Tax=Per... [more]
A0A484E1J0_BRELC1.100e-12352.49CAF1C_H4-bd domain-containing protein n=1 Tax=Brem... [more]
A0A024UF95_9STRA1.330e-12351.73CAF1C_H4-bd domain-containing protein n=6 Tax=Apha... [more]
M4BTG4_HYAAE1.390e-12153.51CAF1C_H4-bd domain-containing protein n=1 Tax=Hyal... [more]
A0A6G0XVI8_9STRA3.310e-12054.39CAF1C_H4-bd domain-containing protein n=2 Tax=Apha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:516563..520933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1653
Model size2555
Exons6
Ec32 orthologEc-27_001000.1
Ec32 ortholog descriptionHistone-binding protein RBBP4, N-terminal
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.K
EggNOG OGsKOG0302@1,KOG0302@2759
EggNOG free text desc.chromatin disassembly
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006337,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0022411,GO:0022607,GO:0022613,GO:0031497,GO:0031498,GO:0031974,GO:0031981,GO:0032984,GO:0032986,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034728,GO:0042254,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051082,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1990837
KEGG koko:K14848
Preferred nameGRWD1
Seed eggNOG ortholog2880.D8LN14
Seed ortholog evalue3.6e-238
Seed ortholog score830.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17446.1prot_E-siliculosus-1a_M_contig94.17446.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 517404..520872 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936504.3545141-UTR-E-siliculosus-1a_M_contig94:516562..5174031622936504.3545141-UTR-E-siliculosus-1a_M_contig94:516562..517403Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 516563..517403 -
1696251108.1022727-UTR-E-siliculosus-1a_M_contig94:516562..5174031696251108.1022727-UTR-E-siliculosus-1a_M_contig94:516562..517403Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 516563..517403 -
1622936504.450512-UTR-E-siliculosus-1a_M_contig94:520872..5209331622936504.450512-UTR-E-siliculosus-1a_M_contig94:520872..520933Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 520873..520933 -
1696251108.2031953-UTR-E-siliculosus-1a_M_contig94:520872..5209331696251108.2031953-UTR-E-siliculosus-1a_M_contig94:520872..520933Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 520873..520933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936504.370317-CDS-E-siliculosus-1a_M_contig94:517403..5177091622936504.370317-CDS-E-siliculosus-1a_M_contig94:517403..517709Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 517404..517709 -
1696251108.116491-CDS-E-siliculosus-1a_M_contig94:517403..5177091696251108.116491-CDS-E-siliculosus-1a_M_contig94:517403..517709Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 517404..517709 -
1622936504.3849368-CDS-E-siliculosus-1a_M_contig94:518095..5183231622936504.3849368-CDS-E-siliculosus-1a_M_contig94:518095..518323Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 518096..518323 -
1696251108.130107-CDS-E-siliculosus-1a_M_contig94:518095..5183231696251108.130107-CDS-E-siliculosus-1a_M_contig94:518095..518323Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 518096..518323 -
1622936504.3981175-CDS-E-siliculosus-1a_M_contig94:518709..5188861622936504.3981175-CDS-E-siliculosus-1a_M_contig94:518709..518886Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 518710..518886 -
1696251108.1460893-CDS-E-siliculosus-1a_M_contig94:518709..5188861696251108.1460893-CDS-E-siliculosus-1a_M_contig94:518709..518886Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 518710..518886 -
1622936504.4105318-CDS-E-siliculosus-1a_M_contig94:519178..5192461622936504.4105318-CDS-E-siliculosus-1a_M_contig94:519178..519246Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 519179..519246 -
1696251108.1577878-CDS-E-siliculosus-1a_M_contig94:519178..5192461696251108.1577878-CDS-E-siliculosus-1a_M_contig94:519178..519246Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 519179..519246 -
1622936504.4240308-CDS-E-siliculosus-1a_M_contig94:519603..5198741622936504.4240308-CDS-E-siliculosus-1a_M_contig94:519603..519874Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 519604..519874 -
1696251108.1698527-CDS-E-siliculosus-1a_M_contig94:519603..5198741696251108.1698527-CDS-E-siliculosus-1a_M_contig94:519603..519874Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 519604..519874 -
1622936504.437306-CDS-E-siliculosus-1a_M_contig94:520269..5208721622936504.437306-CDS-E-siliculosus-1a_M_contig94:520269..520872Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 520270..520872 -
1696251108.1842039-CDS-E-siliculosus-1a_M_contig94:520269..5208721696251108.1842039-CDS-E-siliculosus-1a_M_contig94:520269..520872Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 520270..520872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17446.1

>prot_E-siliculosus-1a_M_contig94.17446.1 ID=prot_E-siliculosus-1a_M_contig94.17446.1|Name=mRNA_E-siliculosus-1a_M_contig94.17446.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=551bp
MGKKTAGSKTATPRKVDISPASPTSQSTSKRQRSGEDAATSTTKKVAPHA
TTGGGGDGSKEEEEEELVFEDPFGDEFDPEDIDAINAEPEEDGDSDDGGM
DAETGEAAASGSSTAATDAEGAAAPQETKVWRAGVDELAEGDELEYDSTA
YHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRL
QVMKLSDLHRTGRKKQRGDGSNDDDDESSDEEGEDETDDDPTLDHINIPH
RGGVNRVRSMPQRPGVVATWSETSDVHVWDLEEQVSALAAKGAPRKSKVD
PAFTFDGHMEASATEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVT
DPVPFVGHVASVEDLQWSPTETTVFASASADKTVAVWDLRKKNGAMLSLK
AHEEDVNVITWNRNVTYLLASGSDDGSFKIWDLRAFGSGEPVAQFRWHKA
PITSIEWHPTDESMLAVSGADNQLTVWDLSVEADDEAAAGMAGAGGGGAA
GGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPATTV
*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig94:516563..520933-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17446.1 ID=mRNA_E-siliculosus-1a_M_contig94.17446.1|Name=mRNA_E-siliculosus-1a_M_contig94.17446.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4371bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:516563..520933- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CAGCCATCGCCATGCATCATCGCATCCAACCACCTCCCCAGCTCCCCAGC CGGACAGCACCATGGGCAAGAAGACAGCAGGCAGCAAGACGGCCACTCCG AGGAAGGTGGACATTTCTCCAGCTTCCCCGACGTCCCAGTCTACCTCAAA GCGACAGCGAAGCGGCGAAGACGCGGCGACCTCGACCACGAAGAAGGTTG CGCCGCATGCTACCACTGGTGGCGGCGGCGACGGCAGTAAGGAGGAGGAG GAGGAGGAGCTCGTGTTCGAAGACCCATTCGGAGATGAGTTCGACCCGGA AGACATCGACGCCATAAATGCAGAGCCGGAAGAAGATGGCGACAGCGATG ATGGTGGCATGGACGCAGAGACGGGAGAGGCTGCAGCAAGTGGCTCCAGC ACCGCCGCCACGGACGCTGAGGGAGCAGCAGCGCCACAAGAGACGAAGGT GTGGCGAGCCGGCGTGGACGAGCTGGCGGAAGGGGATGAGCTGGAGTACG ACAGCACGGCCTACCATATGTACCATTCGCTGAGACCGGAGTGGCCGTGC CTCAGCTTCGACGTGATCCGAGACAGCCTGGGTGCGAACCGCTCCCGCTA TCCCCACACTGTGTTCGCCGTGGCGGGCACTCAGGCCGACCGCGCCGACA ACAACCGCCTACAGGTGTGTTAGTGGGTCCCTGTTTCAAGTGCTTTATGT TCCCTGCCGTGCTGTGTCGACGGGGGGCTGCGTAGCTGTCACGTTCACTG CTGTTTCTCCTTGACTGCTGTGAGGAGCGTAAACAAGCAATGGGGTGATG GTCCCAGCAGGGTAGCTGCATAGCGGTCAAGCTCACGGCTGCATCTTCTT GTCGGTGGACTCCGGTAGCGCCGTATACCACCAGGAGCAAAGCTTACCGA ATCTCGCTCTCCATTTCATCTTCCCCTCCTCTCCCCTCACCTCACAAACG ACTGATAAGGCGAATGCAGACGTGCATGCATACGGCCTCAAGGCCCCCGA CGAGTATTTTATGTCGGCCCTGAGCTCCAACACACACCCGTCCTTTCCTA TCTATCCAGGTCATGAAGCTCTCGGATCTTCACCGCACGGGCAGAAAAAA GCAACGCGGCGACGGCAGCAACGACGACGACGACGAGTCGTCAGACGAGG AAGGAGAGGACGAGACCGACGATGACCCTACCCTGGACCACATCAACATC CCGCACCGGGGCGGGGTGAACCGCGTGCGGTCGATGCCGCAGCGCCCGGG TGTCGTGGCCACCTGGTCGGAGACGTCGGACGTTCACGTGTGGGACCTCG AGGAGCAGGTGTCTGCCCTCGCGGCAAAAGGTGAGTGAGCGCGTGTGTAC GCGCCGGAAGTGAGTGCGCCGCCCGCACGCGCCGGCCGTGAGTGCGCTGC CCGTACTCATGTGCAGGATTTATTTGAGATCTTCTTTTCTTGTTTGCCTC CAACAGACATGCGCGCACACCCAGATGCATGAGTAGGGTTACCTTATCTG GAATATAGCTCAGCGTTGGCCAGAGGCACCATTGATGCGGCTTAGAAGGC GGCCGTTATCTTCGTTTTGATGACTATAGCACTGCCGACGCCGCAGGTAC CGCCGTGTTGGGCCAAACTTTGAACCCGGTCTTTTCGCCCCCGCTATCTA TGTTTTAATGTCCGTGTGAATATACGGAACGACGCAGGCGCGCCGAGGAA ATCGAAGGTGGATCCGGCCTTCACGTTCGATGGGCACATGGAGGCGAGTG CTACTGTTGGAGAAGGAATCGTGAGGGGGCTGGGGGTTGCGTGTTGTTGA GGGTTGCTCCATGATGGGGTGCGCGGGAATACGGGGAAGGAGATAAGATA ATGAATACCAGTAGTTGCCAAATATCGACAAAAACGAAGAGAGTAATTGC TGTTGGTAGTATCTTTGTTCGGAGTAGGAATAGTGGCGCTCTGTCTCGGA AAGGTATGCTCGGTCAATGGTCCGATTAATCAAGACAAGCCAGAAACGCC ATTTAGATAACACCCCCCTTCGTCCCTGTCTGGCTACCGTGTTGCAGGAG GGTTTTGCGTTAGACTGGTCGCCAACAGAAGAAGGACGGTTAGCGACGGG CGACTGCGGTAACAGCGTGCACGTGACCCGAACCGTCGAGGGGGGCTGGG TAACGGACCCCGTACCGTTCGTCGGGCACGTCGCATCGGTGGAAGATCTC CAGTGGAGCCCAACGGAGACAACGGTATGTATCACCAACAGCTACGTGCC TAGTGTTTGGACGCTAAGCATCAATGTTGCATGCTGATTGTTGTTGCTGC GTCATGTGTTTTACCGTCGAACAGGTGCAGCAGTCTCTTACAACGTCATC CCCGAGAACCGTTTGCGTCATTCTTCGTGTGTACTAGTTTTGACATGGCA GTTGGCAGTGGCGAAGTATACGCATAGCGAAGTTGAACATACTCATGTGC TGCCGTGCGTTGTCTAATGGAGCGGGTCGTGGCGGCTGTTGATATTGTGA AATCTCTTTTCTGTGTCCTCCGACACAAAACTGACCCAGCAGATGTACCA TCATGGGTTCTTTATTTTTCTCCGACTTTTCCTTGTTTTGGGACGGACAT CGACGAACAGGTGTTCGCCTCCGCCTCGGCGGACAAGACCGTGGCGGTCT GGGACCTCCGCAAGAAGAACGGTGCGATGCTCAGCCTCAAGGCGCACGAG GAGGACGTAAACGTCATCACGTGGAACCGAAACGTTACGTACCTCCTGGC TTCGGGCTCGGACGACGGAAGCTTCAAGATCTGGGACCTCCGGGCGTTCG GGAGCGGGGAGCCCGTTGCGCAGTTCCGATGGCATAAGGTGCGGTTCGGC GGTTTCATGGTTGGTGCTGCGCTGTGCCTGCTTCTTTTGGGTTATGTGGT GCAAGTGAGCGGGTCTTTCCTGTTGTGTGGTATGGAAGGTACAAGGGTGT GGCACATGCGTCCATTTCTTTGTGGCCTCACCTCTCCTGGCTGTTGCGGC TCGCAAGTGTTTTAGAGCATTGCTCAGGGTGTCTCTATTGTCTGTTCGAG CAACCAGCATGTTCGCATCAGGCAACACTGGTGCCGTCTGTGCGATCAAG ATGTTGTGCCATGTACCGGTGTTAGACACCTCACAGCAGCAGCGCTCTTT TCAGAACGCCCAGGTGTCTTCAGTTGTCTCGAAATCAAGACTTCACATCA CCCCCTACCCCCCAAAAAACACAGGCTCCGATAACGTCCATCGAGTGGCA CCCAACGGATGAGTCTATGCTGGCGGTATCGGGGGCAGACAACCAATTAA CGGTGTGGGATTTGTCGGTGGAGGCGGATGACGAAGCAGCAGCGGGAATG GCGGGAGCTGGTGGGGGGGGGGCGGCAGGCGGGCTAAAGGATCTACCGCC GCAGCTTCTTTTCATCCACCAGGGACAGACGGACATCAAGGAGCTACACT TTCACCCTCAGATTCCGGGAGTGATCATGAGCACTGCGGCAGATGGGTTC AACATTTTCAAGCCCGCCACAACAGTCTAGGCTTGTGCGTGATGATTTTA TTCCCCTCTCATGCTTTCCAGATGCCTGCTCGTGGGTCTGAAGTCCCCTG CGCTCTGCGATACCGTGTTGTGTTGTTTGGGTCGTAATGGGTGCGCCACT TCACGACGTCCCCCGTGGTGTATTATGGCCATGTCGTGCATGACGGGTTG GCCACATCCCGTTGGGAGTTCGTGTGTTTGGACAAGTACTTTTGCCTTGG CTCGCCTTTTGATTCTTCAGCCCTTTGCCAAACACGGGCAAAGTTGGAGG TGCACCGCTGTGAGCCGGCATGAAGAGCAGGGAGTCAGTGCTGCTCGCCG CCCATTGGAGTTGCAATTTTTTTTACTATCGCCGATACTTGCGGGTCAAT CTTCCTCTGTGCGGCGAGTGTTTGGTGGTGTCGGGCGACTGTATAAAATG TCGAAAGTGGACTTTGGGTGTTGGATGGAAACAAGAACATGTTTTTTACG ATAATAGTAGATGCCGACTAAAGGTGTGTTTGCGTTTTGACCTCGTGCAT CCAGAGTGTTGCCTGCGCATTTCCGTGATTGCTGTAGTTCCTCGGGGCTT TGCTTTTGGTGGTGGGGGGATGTGTTCGCCCCGTGCTCTTGACGGAATTT TCATGCAATTGAGGCTTGGCGATGGGCGATGCTCCCTCCCAAACGAGATA TTTGTCGACTAGAATCGCCAAGCGATAAACCACGCAACGTACTGGCGAAC TTCCAGGAGAGCCATGCCTTTTGCAGTGTCTGCTGTCTAGCTGTGCTACA AAAGCCTACAGGAGGTCTGCACTCATATGTAGCGACGAATGCCCGAGTAT TTCCACAGCGAAATATAGTCC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:516563..520933-

>mRNA_E-siliculosus-1a_M_contig94.17446.1 ID=mRNA_E-siliculosus-1a_M_contig94.17446.1|Name=mRNA_E-siliculosus-1a_M_contig94.17446.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3306bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:516563..520933- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGCAAGAAGACAGCAGGCAGCAAGACGGCCACTCCGAGGAAGGTGGA
CATTTCTCCAGCTTCCCCGACGTCCCAGTCTACCTCAAAGCGACAGCGAA
GCGGCGAAGACGCGGCGACCTCGACCACGAAGAAGGTTGCGCCGCATGCT
ACCACTGGTGGCGGCGGCGACGGCAGTAAGGAGGAGGAGGAGGAGGAGCT
CGTGTTCGAAGACCCATTCGGAGATGAGTTCGACCCGGAAGACATCGACG
CCATAAATGCAGAGCCGGAAGAAGATGGCGACAGCGATGATGGTGGCATG
GACGCAGAGACGGGAGAGGCTGCAGCAAGTGGCTCCAGCACCGCCGCCAC
GGACGCTGAGGGAGCAGCAGCGCCACAAGAGACGAAGGTGTGGCGAGCCG
GCGTGGACGAGCTGGCGGAAGGGGATGAGCTGGAGTACGACAGCACGGCC
TACCATATGTACCATTCGCTGAGACCGGAGTGGCCGTGCCTCAGCTTCGA
CGTGATCCGAGACAGCCTGGGTGCGAACCGCTCCCGCTATCCCCACACTG
TGTTCGCCGTGGCGGGCACTCAGGCCGACCGCGCCGACAACAACCGCCTA
CAGATGGGCAAGAAGACAGCAGGCAGCAAGACGGCCACTCCGAGGAAGGT
GGACATTTCTCCAGCTTCCCCGACGTCCCAGTCTACCTCAAAGCGACAGC
GAAGCGGCGAAGACGCGGCGACCTCGACCACGAAGAAGGTTGCGCCGCAT
GCTACCACTGGTGGCGGCGGCGACGGCAGTAAGGAGGAGGAGGAGGAGGA
GCTCGTGTTCGAAGACCCATTCGGAGATGAGTTCGACCCGGAAGACATCG
ACGCCATAAATGCAGAGCCGGAAGAAGATGGCGACAGCGATGATGGTGGC
ATGGACGCAGAGACGGGAGAGGCTGCAGCAAGTGGCTCCAGCACCGCCGC
CACGGACGCTGAGGGAGCAGCAGCGCCACAAGAGACGAAGGTGTGGCGAG
CCGGCGTGGACGAGCTGGCGGAAGGGGATGAGCTGGAGTACGACAGCACG
GCCTACCATATGTACCATTCGCTGAGACCGGAGTGGCCGTGCCTCAGCTT
CGACGTGATCCGAGACAGCCTGGGTGCGAACCGCTCCCGCTATCCCCACA
CTGTGTTCGCCGTGGCGGGCACTCAGGCCGACCGCGCCGACAACAACCGC
CTACAGGTCATGAAGCTCTCGGATCTTCACCGCACGGGCAGAAAAAAGCA
ACGCGGCGACGGCAGCAACGACGACGACGACGAGTCGTCAGACGAGGAAG
GAGAGGACGAGACCGACGATGACCCTACCCTGGACCACATCAACATCCCG
CACCGGGGCGGGGTGAACCGCGTGCGGTCGATGCCGCAGCGCCCGGGTGT
CGTGGCCACCTGGTCGGAGACGTCGGACGTTCACGTGTGGGACCTCGAGG
AGCAGGTGTCTGCCCTCGCGGCAAAAGGTCATGAAGCTCTCGGATCTTCA
CCGCACGGGCAGAAAAAAGCAACGCGGCGACGGCAGCAACGACGACGACG
ACGAGTCGTCAGACGAGGAAGGAGAGGACGAGACCGACGATGACCCTACC
CTGGACCACATCAACATCCCGCACCGGGGCGGGGTGAACCGCGTGCGGTC
GATGCCGCAGCGCCCGGGTGTCGTGGCCACCTGGTCGGAGACGTCGGACG
TTCACGTGTGGGACCTCGAGGAGCAGGTGTCTGCCCTCGCGGCAAAAGGC
GCGCCGAGGAAATCGAAGGTGGATCCGGCCTTCACGTTCGATGGGCACAT
GGAGGCGAGTGCTACTGCGCGCCGAGGAAATCGAAGGTGGATCCGGCCTT
CACGTTCGATGGGCACATGGAGGCGAGTGCTACTGAGGGTTTTGCGTTAG
ACTGGTCGCCAACAGAAGAAGGACGGTTAGCGACGGGCGACTGCGGTAAC
AGCGTGCACGTGACCCGAACCGTCGAGGGGGGCTGGGTAACGGACCCCGT
ACCGTTCGTCGGGCACGTCGCATCGGTGGAAGATCTCCAGTGGAGCCCAA
CGGAGACAACGGAGGGTTTTGCGTTAGACTGGTCGCCAACAGAAGAAGGA
CGGTTAGCGACGGGCGACTGCGGTAACAGCGTGCACGTGACCCGAACCGT
CGAGGGGGGCTGGGTAACGGACCCCGTACCGTTCGTCGGGCACGTCGCAT
CGGTGGAAGATCTCCAGTGGAGCCCAACGGAGACAACGGTGTTCGCCTCC
GCCTCGGCGGACAAGACCGTGGCGGTCTGGGACCTCCGCAAGAAGAACGG
TGCGATGCTCAGCCTCAAGGCGCACGAGGAGGACGTAAACGTCATCACGT
GGAACCGAAACGTTACGTACCTCCTGGCTTCGGGCTCGGACGACGGAAGC
TTCAAGATCTGGGACCTCCGGGCGTTCGGGAGCGGGGAGCCCGTTGCGCA
GTTCCGATGGCATAAGGTGTTCGCCTCCGCCTCGGCGGACAAGACCGTGG
CGGTCTGGGACCTCCGCAAGAAGAACGGTGCGATGCTCAGCCTCAAGGCG
CACGAGGAGGACGTAAACGTCATCACGTGGAACCGAAACGTTACGTACCT
CCTGGCTTCGGGCTCGGACGACGGAAGCTTCAAGATCTGGGACCTCCGGG
CGTTCGGGAGCGGGGAGCCCGTTGCGCAGTTCCGATGGCATAAGGCTCCG
ATAACGTCCATCGAGTGGCACCCAACGGATGAGTCTATGCTGGCGGTATC
GGGGGCAGACAACCAATTAACGGTGTGGGATTTGTCGGTGGAGGCGGATG
ACGAAGCAGCAGCGGGAATGGCGGGAGCTGGTGGGGGGGGGGCGGCAGGC
GGGCTAAAGGATCTACCGCCGCAGCTTCTTTTCATCCACCAGGGACAGAC
GGACATCAAGGAGCTACACTTTCACCCTCAGATTCCGGGAGTGATCATGA
GCACTGCGGCAGATGGGTTCAACATTTTCAAGCCCGCCACAACAGTCTAG
GCTCCGATAACGTCCATCGAGTGGCACCCAACGGATGAGTCTATGCTGGC
GGTATCGGGGGCAGACAACCAATTAACGGTGTGGGATTTGTCGGTGGAGG
CGGATGACGAAGCAGCAGCGGGAATGGCGGGAGCTGGTGGGGGGGGGGCG
GCAGGCGGGCTAAAGGATCTACCGCCGCAGCTTCTTTTCATCCACCAGGG
ACAGACGGACATCAAGGAGCTACACTTTCACCCTCAGATTCCGGGAGTGA
TCATGAGCACTGCGGCAGATGGGTTCAACATTTTCAAGCCCGCCACAACA
GTCTAG
back to top