mRNA_E-siliculosus-1a_M_contig94.17442.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17442.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17442.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17442.1 vs. uniprot
Match: A0A6H5KRS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS9_9PHAE)

HSP 1 Score: 525 bits (1351), Expect = 1.810e-184
Identity = 280/312 (89.74%), Postives = 284/312 (91.03%), Query Frame = 1
Query:   61 MPSTMRCVCRRPFRAITARWLLSVLIVVACQATSTLRNRGATPAATSTCS--GARSSSAXXXXXXXXXXSAFQLSARCRTTFRSQPHRRGVPTRRGTHHRSRRYFPHRYTELLRMGARSGDGSYRGGPAGPRPKKRPLVFLCQAVNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLNFIDEQEPKSVEEFHIKSQASVDVVMRGRRTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAEA 990
            MPSTMR VCRRPFRAITARWLLSVLIVVACQATSTLRNR ATPAATSTCS  GA SSSA          SAF  S+RC T FRSQPHRRGV TR GTHHR RRYFPHRYTELLRMGA SGD  Y+G PAGPRPKKRPLVFLCQA+NDAILEMCVENKGRPLAKSMTDFVE SMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNL FIDEQEPKSVEEFHIKSQASVDVVMRGR+TNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAEA
Sbjct:    1 MPSTMRRVCRRPFRAITARWLLSVLIVVACQATSTLRNRCATPAATSTCSMQGACSSSAGATSTCRASRSAFLPSSRCGTKFRSQPHRRGVSTRPGTHHRIRRYFPHRYTELLRMGAGSGDERYQGAPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVELSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAEA 312          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17442.1 vs. uniprot
Match: D8LN10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN10_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 4.240e-128
Identity = 193/198 (97.47%), Postives = 195/198 (98.48%), Query Frame = 1
Query:  397 MGARSGDGSYRGGPAGPRPKKRPLVFLCQAVNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLNFIDEQEPKSVEEFHIKSQASVDVVMRGRRTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAEA 990
            MGARSGDGSYRGGPAGPRPKKRPLVFLCQA+NDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNL FIDEQEPKSVEEFHIKSQ  VDVVMRGR+TNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAEA
Sbjct:    1 MGARSGDGSYRGGPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQ--VDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAEA 196          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17442.1 vs. uniprot
Match: A0A1Y1HTH8_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTH8_KLENI)

HSP 1 Score: 116 bits (291), Expect = 2.030e-26
Identity = 67/178 (37.64%), Postives = 105/178 (58.99%), Query Frame = 1
Query:  460 RPLVFLCQAVNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTR-----VPGQTLTGVEKRYRTQWISALDFVMQNLNFIDE---QEPKSVEEFHIKSQASVDVVMRGRRTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQK 969
            R L  +CQ +  A  E+CVEN GRP A ++ DFV  ++E    G S++++ ++LQ            V G  LTG E+RYR+QW+  +   +Q L    E   Q+P + +E  I   A +  V+ G+RT +EQ+ VKFD+AL+T G +GG  +E   ++PQ +P++QLVLL ++ L +
Sbjct:   71 RSLDDVCQDIEKAFSEVCVENLGRPAAAALFDFVAATVEAYMLGASRDKVTIQLQYGSKEAYRIERDVAGYRLTGSEERYRSQWLDVIYTTLQLLKQGSEEWRQQPATQDESLI---AIIHRVLEGQRTGEEQSLVKFDRALSTAGASGGATSERRVVAPQWIPVTQLVLLTMKVLNE 245          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17442.1 vs. uniprot
Match: A0A388LBA0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LBA0_CHABU)

HSP 1 Score: 115 bits (289), Expect = 1.680e-25
Identity = 65/182 (35.71%), Postives = 104/182 (57.14%), Query Frame = 1
Query:  460 RPLVFLCQAVNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQL----LDST-TRVPGQTLTGVEKRYRTQWISALDFVMQNLNFIDEQEPKSVEEFHIKSQAS-VDVVMRGRRTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAE 987
            R L  LC+ V  A  E+CV+N GRP   ++ DF   + E    G++++QL LEL+     +D    +  G  LT  E+RYR+QWI  +   +  +  ++ +E  +  +   +   + V  V+ G+RT +EQT VKFD+ALAT G +GG A +   I+PQ VP+SQ+VLL ++ + + +   E
Sbjct:  134 RSLPQLCRLVERAFFEVCVQNLGRPAGMALYDFTVATSEAFFKGFTRDQLALELRFGSHHMDGYGVQAAGYRLTSSEERYRSQWIDTIYVTLHMMKVVEPEEASNTPDMGDEWLRNIVHRVLEGQRTGEEQTAVKFDRALATAGASGGAAAQKKVIAPQWVPVSQIVLLTMKVVAEAQARHE 315          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17442.1 vs. uniprot
Match: A0A2R6W5D4_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W5D4_MARPO)

HSP 1 Score: 110 bits (275), Expect = 5.210e-24
Identity = 61/181 (33.70%), Postives = 104/181 (57.46%), Query Frame = 1
Query:  457 KRPLVFLCQAVNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLD-----STTRVPGQTLTGVEKRYRTQWISALDFVMQNLNFIDEQEPKSV-----EEFHIKSQASVDVVMRGRRTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQK 969
            K  L  +C+ +     E+CVEN+GRP   ++ +FV  ++    +G+++++L L+L   D     S     G  LT  E++YR+QW+  +   +Q L  +D Q  +S       + H+ S   V  V+ G+++ DEQ+FVKFD+ LAT G +GG   +  A++PQ +PL+QLVLL ++ + +
Sbjct:   82 KPSLADICRCLQHCFFEICVENRGRPAGTALHEFVGAAVAAYLAGHTRDRLSLQLAYGDNGMEESKLETEGFRLTASEEQYRSQWLDTIYTTLQFLKVVDNQASRSSLVTAQTDSHLFS--IVRRVVEGQQSGDEQSFVKFDRGLATKGASGGAIAQREAVAPQFIPLTQLVLLTMKVVNE 260          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17442.1 vs. uniprot
Match: A0A0G4F2M6_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F2M6_VITBC)

HSP 1 Score: 97.8 bits (242), Expect = 8.020e-20
Identity = 61/163 (37.42%), Postives = 93/163 (57.06%), Query Frame = 1
Query:  505 EMCVENKGRPLAKSMTDFVEFSMEG-LASGYSKEQLLLELQLLDST--TRVPGQTLTGVEKRYRTQWISALDFVMQNLNFID-----EQEPKSVEEFHIKSQASVDVVMRGRRTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQK 969
            E C+ N+GR LA+++ DFVE  ++  +  G S  QL LE Q+       R P + LT  +K  R +WI  +   ++ L  +      E E  S        Q  V   ++G++T D Q++V FD++LAT G  GGVATE +A+ PQ++PLSQLVLL ++A+ +
Sbjct:   55 EACLHNRGRSLAEALGDFVEECVDVFIYGGCSPVQLQLETQVEGEIHCERNPLERLTQDDKEARARWIRCVWLTLRTLGVVSVRRDSEVEGPSTSAADAALQGLVSTTVKGQQTGDRQSYVPFDRSLATRGNQGGVATENVAVPPQVIPLSQLVLLTMKAVNE 217          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17442.1 vs. uniprot
Match: A0A2K1KSW5_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KSW5_PHYPA)

HSP 1 Score: 97.1 bits (240), Expect = 4.230e-19
Identity = 52/166 (31.33%), Postives = 94/166 (56.63%), Query Frame = 1
Query:  466 LVFLCQAVNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQ-----LLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLNFIDEQEPKSVEEFHIKSQASVDVVMRGRRTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLL 948
            L  +C+ ++    E+CV+N GR   +++ +FV  +++   +GY+ ++L L++      + +      G  LT  E+ YRTQW++ +   +Q L   D +   S    +++    +   + G+R  +EQ+ VKFD+ LAT G +GG  +E + ISPQ VP++Q+VLL
Sbjct:  100 LDDVCRRLHLCFFEICVQNLGRSAGQALHEFVCAAVDAFMAGYTFDRLNLQIVHGSGGMEEFKMENAGYRLTASEEYYRTQWLTTIYVTLQMLKVADNEASASFVTENLQLVQIIHRTLEGQRHGEEQSLVKFDRGLATKGASGGAVSEKLVISPQWVPVTQIVLL 265          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KRS9_9PHAE1.810e-18489.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN10_ECTSI4.240e-12897.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y1HTH8_KLENI2.030e-2637.64Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A388LBA0_CHABU1.680e-2535.71Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A2R6W5D4_MARPO5.210e-2433.70Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A0G4F2M6_VITBC8.020e-2037.42Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A2K1KSW5_PHYPA4.230e-1931.33Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:483913..487037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size987
Model size1318
Exons5
Ec32 orthologEc-27_000950.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2EQ6P@1,2ST8S@2759
Seed eggNOG ortholog2880.D8LN10
Seed ortholog evalue3.8e-102
Seed ortholog score378.3
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936502.5182903-UTR-E-siliculosus-1a_M_contig94:483912..4839181622936502.5182903-UTR-E-siliculosus-1a_M_contig94:483912..483918Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 483913..483918 +
1696251107.6519237-UTR-E-siliculosus-1a_M_contig94:483912..4839181696251107.6519237-UTR-E-siliculosus-1a_M_contig94:483912..483918Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 483913..483918 +
1622936502.6499221-UTR-E-siliculosus-1a_M_contig94:486712..4870371622936502.6499221-UTR-E-siliculosus-1a_M_contig94:486712..487037Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 486713..487037 +
1696251107.7119882-UTR-E-siliculosus-1a_M_contig94:486712..4870371696251107.7119882-UTR-E-siliculosus-1a_M_contig94:486712..487037Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 486713..487037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936502.5455954-CDS-E-siliculosus-1a_M_contig94:483918..4845011622936502.5455954-CDS-E-siliculosus-1a_M_contig94:483918..484501Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 483919..484501 +
1696251107.663466-CDS-E-siliculosus-1a_M_contig94:483918..4845011696251107.663466-CDS-E-siliculosus-1a_M_contig94:483918..484501Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 483919..484501 +
1622936502.566874-CDS-E-siliculosus-1a_M_contig94:484860..4849971622936502.566874-CDS-E-siliculosus-1a_M_contig94:484860..484997Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 484861..484997 +
1696251107.6731455-CDS-E-siliculosus-1a_M_contig94:484860..4849971696251107.6731455-CDS-E-siliculosus-1a_M_contig94:484860..484997Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 484861..484997 +
1622936502.5846608-CDS-E-siliculosus-1a_M_contig94:485704..4857701622936502.5846608-CDS-E-siliculosus-1a_M_contig94:485704..485770Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 485705..485770 +
1696251107.6840127-CDS-E-siliculosus-1a_M_contig94:485704..4857701696251107.6840127-CDS-E-siliculosus-1a_M_contig94:485704..485770Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 485705..485770 +
1622936502.6078033-CDS-E-siliculosus-1a_M_contig94:485990..4860931622936502.6078033-CDS-E-siliculosus-1a_M_contig94:485990..486093Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 485991..486093 +
1696251107.6938155-CDS-E-siliculosus-1a_M_contig94:485990..4860931696251107.6938155-CDS-E-siliculosus-1a_M_contig94:485990..486093Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 485991..486093 +
1622936502.6301577-CDS-E-siliculosus-1a_M_contig94:486614..4867121622936502.6301577-CDS-E-siliculosus-1a_M_contig94:486614..486712Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 486615..486712 +
1696251107.7030663-CDS-E-siliculosus-1a_M_contig94:486614..4867121696251107.7030663-CDS-E-siliculosus-1a_M_contig94:486614..486712Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 486615..486712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17442.1prot_E-siliculosus-1a_M_contig94.17442.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 483919..486712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17442.1

>prot_E-siliculosus-1a_M_contig94.17442.1 ID=prot_E-siliculosus-1a_M_contig94.17442.1|Name=mRNA_E-siliculosus-1a_M_contig94.17442.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=329bp
MICDDRRSRRAATRESTTMPSTMRCVCRRPFRAITARWLLSVLIVVACQA
TSTLRNRGATPAATSTCSGARSSSAGATSTCRASRSAFQLSARCRTTFRS
QPHRRGVPTRRGTHHRSRRYFPHRYTELLRMGARSGDGSYRGGPAGPRPK
KRPLVFLCQAVNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQ
LLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLNFIDEQEPK
SVEEFHIKSQASVDVVMRGRRTNDEQTFVKFDKALATGGVAGGVATECIA
ISPQMVPLSQLVLLGIRALQKLEDAAEA*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig94:483913..487037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17442.1 ID=mRNA_E-siliculosus-1a_M_contig94.17442.1|Name=mRNA_E-siliculosus-1a_M_contig94.17442.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3125bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:483913..487037+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CATGACATGATCTGTGATGATCGCCGATCTCGACGTGCAGCAACAAGAGA GAGCACAACGATGCCGTCCACGATGCGTTGCGTATGCAGACGGCCATTCC GTGCGATAACCGCGCGTTGGCTTCTTTCCGTTCTTATTGTCGTTGCCTGC CAAGCAACGAGCACCCTACGGAATCGCGGCGCAACACCTGCCGCTACTTC TACATGTAGTGGTGCCCGCAGCAGTTCCGCAGGCGCAACGTCTACATGTC GTGCGTCGCGGTCCGCGTTTCAGCTATCGGCGAGATGCAGGACAACGTTT CGGAGCCAACCCCACCGGCGAGGCGTCCCAACCCGGCGTGGAACTCACCA CCGAAGTCGCCGATATTTTCCGCACCGCTATACGGAACTACTACGGATGG GGGCCAGATCAGGCGACGGTAGTTACCGGGGGGGACCGGCAGGGCCCCGG CCGAAGAAAAGGCCATTGGTGTTTCTGTGCCAGGCGGTGAACGACGCGAT CTTGGAGATGTGCGTGGAAAACAAAGGGCGACCTCTGGCCAAATCCATGA CGGATTTCGTCGAGTTCAGTATGGAGGGTCTGGCATCAGGTGAGCAGGAA GACGCGAACAGGAATGGACATCTTATAGCCGTGATGGCGAGCAGAGCAGC ACAGATGATGTCGGCTGACCGCTCCCCTTCCGAGGTGTGTACTATAATGG CGGGGGCTGGCGAGGACGGCAACGCCGCACTACAGAGACACACATACATT CGGCTAGAAACCTTGGTTGAAGTAATTGTTCGCCAGGCTCCGTGAAGGCG CGCAACACGTGCGCTTCGTCAGGTGCCGCAAGCACGGCTACGCACTGGTG CTCTTGCCGATCGCACCTCCCCTTGTGAATGTCCAGCCGCGCCTTAAAGG TCTCGTGTCTGTTTGCGCATGTCGTTGGGGCCTTTCTGCCCTCTGCAGGC TACTCGAAAGAACAGCTGCTGTTGGAGCTGCAGCTGCTGGACAGCACGAC TCGAGTGCCGGGCCAGACTCTCACAGGTGTGGAGAAGCGCTATCGCACGC AGTGGATTTCGGCGTTGGACTTCGTGATGCAGAACGTGAGTGACTTCCAC GCGCCTTCGCAACGGCTCAAGGCCTTGGTTGTGTCGCCAAATGGCTATTC ATTTATAGTTAGAATCGGTCGAAACCGTCCTGTTGAAAGAAGATTTAATT TCAAAGTTCCGCAGACATCGACCCGCGTCGGTCGTCGGCCAACCGATGTC GCAACTTGCATTCGAGGCACAACTGAGCTACCCTCGGTAAAAGGCCTTGT CCCTTAGAAGATCTCCGGGGTGTCGATGGTTGACTCATCGCCGAGGGAAG CCCGTTTTTTTCGGACATGTTGTAGGCGAAGCAGGTGGTGTTGGGAATGA TTTAGCACCGAAGGTGTTGTCCCGGTGATGCCTGTCGATGAAGGTTATGT GTGCCTGCGAGGACTTGTGCCTCGCGGGACAAGCAAGCACGAGAAACCTC CCTGTAGTGCCCCGAGTAGCAATAGGATTAGTCACCCACGTTCTTCGCGG GATTCGGTAGAAGGCAACCGTCCTATCGTGCCGCAGCGAACAATAGGAAG ACAGGAAGAGTCCAAGATATGGATGTTGGATGTCAGGAGCACTGCACGCC CCCCGGTACAACCCGGTCTTGGATTGCCTCTCTACGAAACGTTCGCAAAC AACCCTCAACGTCTTCTCCACGCGTCACCCACACCTTTCTTGGCCCCTTG TGATGCGTCGACACCGGGCCCGCTTTTCTTGATCGAGTTTAGCTGAATTT CATCGACGAGCAGGAGCCGAAGTCGGTTGAGGAGTTCCACATCAAGAGCC AGGCAAGCGTTGAGCCCCTAACTTTGTTCGAGAATTCAAGTCATTTGGCA AACAAACGCGGTCACCTCCTGTTCTTGTTCTGTTCAAGAAAATTTGTGTT ACGTTTCCTCGGTGGAGAGAAGCGTTGAGCGTGCGATCGGTGCAACGGAG TTCTACTAGGTACCCTAATGACACGTTGCCGTAAACCGCGTGTGAACGTT CGCGTATGCCTCCATGACCTCTCCGCAGGTGGACGTGGTCATGCGAGGGA GACGAACCAACGATGAGCAAACTTTCGTCAAGTTCGACAAAGCGTTGGCT ACGGGCGGGGTCGCTGGCGGCGTTGCCACCGGTAAGACTCCCGCTCTTCC TCTCGCCGCAGCTCCGGTTGCGCGTGCCGGTTTTCGCACATCTAGACACC ATCTGTGTTTGCAACACGCTAGTCGACAGACGCTAGATTTCTTGTGTTCG AATTCGATGGACCGTTTGAGGAGTAGTTGGATTCATGAACCACATGGGTT TCCTGCAGGACTAGGCTTGAATTCCTTGCGAACGCGAATATTCACACAGG TGATCGATGCACCATTCGCGTGGACTGTGTTGGGCCGTTGTGCTCGTGTG ATGACAGAGCAGGCTGTTCAATAGGTCATGCACCCTGTCCTCCCAACTCT CCCATGTTCCAATATTTAGTTTTTCCTTTTCCCACGTCGCCCACTCTTGT CGCTCGCTCGTTTCTTTTCTGTTCTCCTCGTTCCCCTCTCGTTTCCCCAC GCCACCGTTGCTTCCGTCTCCTCCACCCGTGGGCGTTGCTCTGGTGCCGT CTGTCTGATTGTGCTTTGTGCATGGATCAAACCGTCGTGACTGACTCGGA AGAATGCATCGCGATATCGCCGCAAATGGTGCCTTTGTCCCAGTTGGTGC TCTTGGGAATCCGCGCCCTTCAAAAATTGGAGGATGCGGCGGAGGCGTAG TTGAGGGTTCTCTCGACGTATTCTTGACAGCACAGAAGAGCGCACACTCT GTGACATTGTTTGTGTACATCTAAAGAGCCACTTGCGTGGATAACGTAAT TCACTCGTAAAACCACGCAAGGTTTCTGGAACCGTTTGACGTTCATCACA CGCGTTCGTGACCGATGGTATGCATACCGCTTTTAAACTCAAAACGTCAT TTGTTTTTCGGTGACTACGGCCAATAGATGGATCCCGCAGCTTTAGCCTC GCCATCGTTGTCCGTGTGCACACCATTTTTCCTTCCCTCCTTCTACCATA GGTGTGTCACCGCTCACGCTGCCAC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:483913..487037+

>mRNA_E-siliculosus-1a_M_contig94.17442.1 ID=mRNA_E-siliculosus-1a_M_contig94.17442.1|Name=mRNA_E-siliculosus-1a_M_contig94.17442.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1974bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:483913..487037+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATCTGTGATGATCGCCGATCTCGACGTGCAGCAACAAGAGAGAGCAC
AACGATGCCGTCCACGATGCGTTGCGTATGCAGACGGCCATTCCGTGCGA
TAACCGCGCGTTGGCTTCTTTCCGTTCTTATTGTCGTTGCCTGCCAAGCA
ACGAGCACCCTACGGAATCGCGGCGCAACACCTGCCGCTACTTCTACATG
TAGTGGTGCCCGCAGCAGTTCCGCAGGCGCAACGTCTACATGTCGTGCGT
CGCGGTCCGCGTTTCAGCTATCGGCGAGATGCAGGACAACGTTTCGGAGC
CAACCCCACCGGCGAGGCGTCCCAACCCGGCGTGGAACTCACCACCGAAG
TCGCCGATATTTTCCGCACCGCTATACGGAACTACTACGGATGGGGGCCA
GATCAGGCGACGGTAGTTACCGGGGGGGACCGGCAGGGCCCCGGCCGAAG
AAAAGGCCATTGGTGTTTCTGTGCCAGGCGGTGAACGACGCGATCTTGGA
GATGTGCGTGGAAAACAAAGGGCGACCTCTGGCCAAATCCATGACGGATT
TCGTCGAGTTCAGTATGGAGGGTCTGGCATCAGATGATCTGTGATGATCG
CCGATCTCGACGTGCAGCAACAAGAGAGAGCACAACGATGCCGTCCACGA
TGCGTTGCGTATGCAGACGGCCATTCCGTGCGATAACCGCGCGTTGGCTT
CTTTCCGTTCTTATTGTCGTTGCCTGCCAAGCAACGAGCACCCTACGGAA
TCGCGGCGCAACACCTGCCGCTACTTCTACATGTAGTGGTGCCCGCAGCA
GTTCCGCAGGCGCAACGTCTACATGTCGTGCGTCGCGGTCCGCGTTTCAG
CTATCGGCGAGATGCAGGACAACGTTTCGGAGCCAACCCCACCGGCGAGG
CGTCCCAACCCGGCGTGGAACTCACCACCGAAGTCGCCGATATTTTCCGC
ACCGCTATACGGAACTACTACGGATGGGGGCCAGATCAGGCGACGGTAGT
TACCGGGGGGGACCGGCAGGGCCCCGGCCGAAGAAAAGGCCATTGGTGTT
TCTGTGCCAGGCGGTGAACGACGCGATCTTGGAGATGTGCGTGGAAAACA
AAGGGCGACCTCTGGCCAAATCCATGACGGATTTCGTCGAGTTCAGTATG
GAGGGTCTGGCATCAGGCTACTCGAAAGAACAGCTGCTGTTGGAGCTGCA
GCTGCTGGACAGCACGACTCGAGTGCCGGGCCAGACTCTCACAGGTGTGG
AGAAGCGCTATCGCACGCAGTGGATTTCGGCGTTGGACTTCGTGATGCAG
AACGCTACTCGAAAGAACAGCTGCTGTTGGAGCTGCAGCTGCTGGACAGC
ACGACTCGAGTGCCGGGCCAGACTCTCACAGGTGTGGAGAAGCGCTATCG
CACGCAGTGGATTTCGGCGTTGGACTTCGTGATGCAGAACCTGAATTTCA
TCGACGAGCAGGAGCCGAAGTCGGTTGAGGAGTTCCACATCAAGAGCCAG
GCAAGCCTGAATTTCATCGACGAGCAGGAGCCGAAGTCGGTTGAGGAGTT
CCACATCAAGAGCCAGGCAAGCGTGGACGTGGTCATGCGAGGGAGACGAA
CCAACGATGAGCAAACTTTCGTCAAGTTCGACAAAGCGTTGGCTACGGGC
GGGGTCGCTGGCGGCGTTGCCACCGGTGGACGTGGTCATGCGAGGGAGAC
GAACCAACGATGAGCAAACTTTCGTCAAGTTCGACAAAGCGTTGGCTACG
GGCGGGGTCGCTGGCGGCGTTGCCACCGAATGCATCGCGATATCGCCGCA
AATGGTGCCTTTGTCCCAGTTGGTGCTCTTGGGAATCCGCGCCCTTCAAA
AATTGGAGGATGCGGCGGAGGCGTAGAATGCATCGCGATATCGCCGCAAA
TGGTGCCTTTGTCCCAGTTGGTGCTCTTGGGAATCCGCGCCCTTCAAAAA
TTGGAGGATGCGGCGGAGGCGTAG
back to top