mRNA_E-siliculosus-1a_M_contig94.17433.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17433.1 vs. uniprot
Match: D8LL22_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI) HSP 1 Score: 764 bits (1974), Expect = 1.150e-265 Identity = 408/511 (79.84%), Postives = 411/511 (80.43%), Query Frame = 1
Query: 76 MAETALSSATAAPRGFHQRTSHYNINCRTNKSEMRIEEPPSRRDKHQHGLGRAGRCPRWRHRPRGSRGATLPATGGGAFRFASPAAGATAAAVLVVTLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGMASXXXXXXXXXXXXXXXXXXXXXXXFMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSLRE 1608
M ET+LSSATAAPRGFHQ TSHYNIN RTNK++MRIEEP SRRDKHQHGLGRAGRCPRWRHRP GSRGATLPATGGGA FA P AGATAAAVLV TLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRR D FMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSLRE
Sbjct: 1 MVETSLSSATAAPRGFHQHTSHYNINRRTNKAKMRIEEPASRRDKHQHGLGRAGRCPRWRHRPSGSRGATLPATGGGAVWFAWPTAGATAAAVLVTTLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRRPPPPTLGNQSDPAGTSSSNSGRASGTV----------------------------------DATTGQASSLGNGTGSAASEDNSSSNDNGFMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSLRE 477
BLAST of mRNA_E-siliculosus-1a_M_contig94.17433.1 vs. uniprot
Match: A0A4D9CZZ7_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZZ7_9STRA) HSP 1 Score: 160 bits (406), Expect = 5.460e-38 Identity = 120/400 (30.00%), Postives = 168/400 (42.00%), Query Frame = 1
Query: 400 LVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLH----NAMDE----------------GAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWS------NRSWLPGRQG--RLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------DGGMASXXXXXXXXXXXXXXXXXXXXXXXFMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAF 1452
LV+++P + HV AAFGP++L E P+ +R LV +P D C L + D G IAL++R CNFT+KV AQ A A+ V+V D+ A ++W +M G E T I IP+V VSH+TG L + +S PG +G R+R ++ GH+ + +G +E L Y+++S++LL+FSG CGL+ AL T YQR +R RA+R LK ++R G + E+ CAICL+ YEDGD L LPC+H +H +CI PWL KS CPMCK F
Sbjct: 23 LVVDQPCCSKHLHVPAAFGPNILGLESPLHARQLVMVEPEDACSDLFPRRASYQDSFFSSSSPSSLSAPSLRGKIALIKRNGCNFTEKVWRAQQAEAAGVIVYDSAARERWGTIMSGVEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLTYNSKDKGSNASTSPSAPLSRASPTSLPDRRKGLRGLWGLLSLRRVMDKQRSRIPLPLPAHPHLESLPASGLGKGRGGRFPCPLTGDGEAPTAGEVVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 422
BLAST of mRNA_E-siliculosus-1a_M_contig94.17433.1 vs. uniprot
Match: W7TBK1_9STRA (Protease-associated RING/U-box zinc finger-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBK1_9STRA) HSP 1 Score: 153 bits (386), Expect = 4.590e-35 Identity = 116/385 (30.13%), Postives = 160/385 (41.56%), Query Frame = 1
Query: 445 AAFGPDVLSAEPPVESRPLVRAKPRDGCVPLH----NAMDE----------------GAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWS------NRSWLPGRQG--RLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------DGGMASXXXXXXXXXXXXXXXXXXXXXXXFMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAF 1452
AAFGP++L E P+ +R LV +P D C L + D G IAL++R CNFT+KV AQ A A+ V+V D+ A ++W +M G E T I IP+V VSH+TG L + +S PG +G R+R ++ GH+ + +G +E L Y+++S++LL+FSG CGL+ AL T YQR +R RA+R LK ++R G S + E+ CAICL+ YEDGD L LPC+H +H +CI PWL KS CPMCK F
Sbjct: 10 AAFGPNILGLESPLHARELVMVEPEDACSDLFPRRASYQDSFFSSSSPSSLSAPSLRGRIALIKRNGCNFTEKVWRAQQAEAAGVIVYDSAARERWGTIMSGVEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLAYNSKDKGSSASTSPSALLSRASPTSLPDRRKGLRGLWGLLSLRRVINKQRSRIPLPLPAHPRLESVPASGLGKARGGRSPCPLTGDGEAPTACEGVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 394
BLAST of mRNA_E-siliculosus-1a_M_contig94.17433.1 vs. uniprot
Match: A0A7S2RLQ5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLQ5_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.280e-23 Identity = 104/392 (26.53%), Postives = 152/392 (38.78%), Query Frame = 1
Query: 397 GLVIE-EPFQAT--FDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGC-----------VPLHN-AMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDT-PATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRL---------------------RASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGMASXXXXXXXXXXXXXXXXXXXXXXXFMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKG 1461
GLV+E P A F HV AAFG V + LV A+P+ GC P+ +++G L++RG CNFT KV+ AQ GA+A ++ D P D+W + M + + IP++ VS+ TG+RLW + + G G + R SV A G+++++ + V LE IY+++S+ LL S L ALG WY + R RA+ L F + ++ + R D C+ICL+ Y G++L LPC H FH +CI PWL +S CP+CK A G
Sbjct: 60 GLVLELSPGAAVEQFSHVPAAFG-----LHHDVTNLRLVPAEPKHGCECASGECLGRPAPVSPFGLEDGFALLIQRGQCNFTDKVIWAQHRGAAAAIICDDQPRDDRWEVTMSSQDQTPVPVSIPSIFVSYRTGQRLWQ-AAQIHGTGGGMTQRWRLLLSGVGFTAAGMRFPRVSVNATGNVMVSMQLVRPLETFIIYVVVSLALLTLSACLWLSLALGLAWYTQLQRRRALMALHRFKY------------------------------------------------------------------DPSTTVAPPATPYTSPSASSHSEKRSPVLCR--DTTCSICLDDYASGETLRALPCGHVFHDRCITPWLERRSVDCPLCKQPALPAG 377
BLAST of mRNA_E-siliculosus-1a_M_contig94.17433.1 vs. uniprot
Match: A0A1V9Y6L8_9STRA (PA domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y6L8_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.740e-17 Identity = 67/192 (34.90%), Postives = 102/192 (53.12%), Query Frame = 1
Query: 352 VLVVTLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDT---PATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVG----ALEMLGIYLLLSVLLLA 906
++V++LL+ LC A LVIE P A H+ A FG V +++ + A P C PL N + G IALV+RG CNF+ KVL+AQ A A AV+V D + W + M D N+ + IP+V VSH +G+RL + + L ++ + G I+ A P +LE +Y +L+++ +A
Sbjct: 5 LVVLSLLTILCSA---LVIERPCCAKLRHIHARFGRRVTNSDEYTRLE-VATAVPIQSCAPLRNDL-HGKIALVKRGGCNFSYKVLNAQRAHAKAVIVYDDYPRQRNESWAIRMVPDHTNSSSVFIPSVFVSHESGDRLLATIDIMASVNETLLVTLNSTGEILPLATPAAVYQESLETSLMYFVLAIVCIA 191
BLAST of mRNA_E-siliculosus-1a_M_contig94.17433.1 vs. uniprot
Match: A0A836CGU0_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGU0_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.030e-11 Identity = 54/134 (40.30%), Postives = 62/134 (46.27%), Query Frame = 1
Query: 412 EPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMD-EGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTP-----------------ATDKWLMVMYGDPENTQGIDIPAVLVSHATGERL 759
+P HV AAFG DV V+ L+ A P D C PL NA G +ALV RG CNFT+KVL AQ GA AV+V DT W ++M G T I IPAV VS T L
Sbjct: 15 DPAYELHWHVPAAFGSDVR-----VDKERLILASPADACTPLSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCAXXXXXXXXXXXXXWAVIMSGSAAETAPITIPAVFVSAPTAALL 143
BLAST of mRNA_E-siliculosus-1a_M_contig94.17433.1 vs. uniprot
Match: A0A7S3R701_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R701_DUNTE) HSP 1 Score: 71.6 bits (174), Expect = 3.280e-11 Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 1300 DDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGK 1458
D + CA+C++ YE G+++ LPC+H+FH QC+R WLS S LCP+CK+ G+
Sbjct: 61 DAETCAVCIQEYEPGEAIMHLPCKHAFHDQCVRSWLSTYSKLCPVCKASVTGE 113
BLAST of mRNA_E-siliculosus-1a_M_contig94.17433.1 vs. uniprot
Match: A0A6G0WJ90_9STRA (RING-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJ90_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.240e-10 Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1291 RREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGL 1467
+ +D+DLC+ICLET+E + LPCRH FH +CI PWL +S+ CP+CK EA L
Sbjct: 225 KSDDEDLCSICLETFERETLVKVLPCRHEFHQECIDPWLENRSSQCPLCKREALDNASL 283
BLAST of mRNA_E-siliculosus-1a_M_contig94.17433.1 vs. uniprot
Match: A0A7X5QVG8_9GAMM (Serine protease n=4 Tax=Luteibacter TaxID=242605 RepID=A0A7X5QVG8_9GAMM) HSP 1 Score: 77.0 bits (188), Expect = 1.350e-10 Identity = 55/141 (39.01%), Postives = 78/141 (55.32%), Query Frame = 1
Query: 430 FDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMD-EGAIALVERGTCNFTQKVLHAQLAGASAVVVTDT-PATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGR--QGRLRASVGAAGHIVMA 840
+++ AAFGP SA + + R P DGC L NA + G +AL++RGTC+FT K L+AQ AGASAV++ + PA + G P + ++IP +LVS A G L +N S L G QG + A G ++ A
Sbjct: 261 YEYAQAAFGPVATSAN---FAGSVARGVPNDGCAALTNAAEVAGKVALIDRGTCDFTVKALNAQAAGASAVLLANNQPAA----VTPGGTPASP--VNIPVILVSQADGNTLKANLSGLTGAVAQGTGLSGTNADGVLIYA 392
BLAST of mRNA_E-siliculosus-1a_M_contig94.17433.1 vs. uniprot
Match: A0A8J9Z1A4_BRALA (RNF13 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z1A4_BRALA) HSP 1 Score: 74.3 bits (181), Expect = 1.540e-10 Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 1285 FMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCK 1440
F + ++ D+CAICL+ YE+GD L LPC H++HT+CI PWL+G CP+CK
Sbjct: 116 FKKGDEYDVCAICLDDYEEGDKLRILPCSHAYHTKCIDPWLTGSKRTCPVCK 167 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17433.1 >prot_E-siliculosus-1a_M_contig94.17433.1 ID=prot_E-siliculosus-1a_M_contig94.17433.1|Name=mRNA_E-siliculosus-1a_M_contig94.17433.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=512bp MAETALSSATAAPRGFHQRTSHYNINCRTNKSEMRIEEPPSRRDKHQHGLback to top mRNA from alignment at E-siliculosus-1a_M_contig94:401794..411429- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17433.1 ID=mRNA_E-siliculosus-1a_M_contig94.17433.1|Name=mRNA_E-siliculosus-1a_M_contig94.17433.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9636bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:401794..411429- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:401794..411429- >mRNA_E-siliculosus-1a_M_contig94.17433.1 ID=mRNA_E-siliculosus-1a_M_contig94.17433.1|Name=mRNA_E-siliculosus-1a_M_contig94.17433.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3072bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:401794..411429- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |