mRNA_E-siliculosus-1a_M_contig94.17421.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17421.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17421.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.750e-55
Identity = 185/369 (50.14%), Postives = 195/369 (52.85%), Query Frame = 3
Query:    9 MPPRGFFSRHTCSQNALANEQGRRALKGAEGETFDLFSEVLTASEWAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAFGTAMQRS*QTCWSIGH-VSASRMRAAVPLSKLLPCLGTRRLSSRCYGRGPNKTF*MRRSVRRCTVRCYLATLLLHELSWRLAQTSTCDAVYYRGRC*AWRMKRVRWTS*ERLSSMERTRRLLTMTATRPFHVAAQFNRAEVIDALVDMGGNIEASNRIGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---------------------------------HASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYPGDAAR 1013
            MPPRGFFSRHTCSQNALANEQGRRALKGAEGETFDLFSEVLT   WAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAA               G  VS    R + PL                                                    A  +         RC                        LL  T      +AA+    +++ ALV  G ++ A +    T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                  H SSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLL K LWPCLYPGDA R
Sbjct:    1 MPPRGFFSRHTCSQNALANEQGRRALKGAEGETFDLFSEVLTTHGWAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAVRYGHAEVVTNLLEHGACVSIKDTRGSTPLQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVNV--------RC-----------------------GLLKRTV---LSLAAEKGHVDILRALVKHGADVTAVDNDRDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVSSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLNKLLWPCLYPGDAER 335          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: A0A6H5JFR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR1_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 9.020e-52
Identity = 94/111 (84.68%), Postives = 98/111 (88.29%), Query Frame = 3
Query:  846 QHASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYPGDAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRVPPRLDSSSTLVDAARTTHNEAKVPR 1178
            Q   +++  AR TSAVVDLLLRLGA ETIVDKRK NAAGLLKK  W CLYPGDA RVYKLL NAPADRAWRRRGFLLLCRAYP+RVPPRLDSSSTLVDAARTTHNEAKVPR
Sbjct:  157 QAVVALSKRARRTSAVVDLLLRLGAHETIVDKRKKNAAGLLKKSWWSCLYPGDAERVYKLLRNAPADRAWRRRGFLLLCRAYPERVPPRLDSSSTLVDAARTTHNEAKVPR 267          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.600e-23
Identity = 66/146 (45.21%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  876 RGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWP-CLYPGDAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRVPPRLDSSST-LVDAARTTHNEAKVPRLETICCGDDTTVEESFGDSWADVAFKVLTLPGEDVFRAIVGYL 1307
            +G + VV+ LLR GADETI + +   A  ++ + +        D  RV +LL NAPADRAWRRRG+L++CRA P RVP R  +S T   + AR T + AK+ R   I    ++TV+ES G +WA V  KV++L  E +FR IV YL
Sbjct:  257 QGAAEVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARARGIA--GESTVDESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.270e-18
Identity = 63/156 (40.38%), Postives = 88/156 (56.41%), Query Frame = 3
Query:  852 ASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKK--PLWPCLYPGDAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRVPPRL-DSSSTLVDAARTTHNEAKVPRLETICCGDDT-TVEESFGDSWADVAFKVLTLPGEDVFRAIVGYL 1307
            A+S AG  +G++ +VDLLLR GADET  D+     A  +     L   L   +   V++LL NAPADRAWRRRG L+LCRA+ +R   R  D   T    +R T + AK+ R + +  G    T E   GD W   + +V+ L  E +FR++VG+L
Sbjct:  268 AASYAGR-QGSAELVDLLLRRGADETTPDRNGQQPADRVGHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRRGTPEGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.550e-17
Identity = 92/152 (60.53%), Postives = 103/152 (67.76%), Query Frame = 3
Query:  648 HVAAQFNRAEVIDALVDMGGNIEASNRIGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYPGDAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRV 1103
            H AA+ NRA  ID LV  G +I+A N  G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +  G+ RG+  VV LLLR GADETIV K+   AA  +    +P   PGD  R   LL  APADRAWRRRG L+LC AYP R+
Sbjct:  207 HWAAKANRANAIDVLVGAGADIQARNMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVGQRRGSVQVVGLLLRWGADETIVCKQGKTAADRIGTRRFPSTEPGDDERARSLLTRAPADRAWRRRGLLVLCHAYPDRL 358          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.460e-13
Identity = 58/152 (38.16%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  879 GTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYPG------DAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRVPPRLDSSSTLVDAA-RTTHNEAKVPRLETIC--CGDDTTVEESFGDSWADVAFKVLTLPGEDVFRAIVGYL 1307
            G   VVDLLLR  ADET  D     A G     +  C+ P       +  RV+KLL  AP DRAWRRRG L+LCRA+P+R+  R ++S        R T +  K+   E +    G+    +      W+++ ++VL L  E +FR IVGYL
Sbjct:  254 GAVEVVDLLLRWNADETDDD-----AYGHTPGNIVGCMTPETDSMFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVEREQVAGGSGEGAAADGRTAREWSNMVYRVLGLD-EGIFRTIVGYL 399          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.540e-12
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  858 SVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYPGDAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRV 1103
            +  G+  G++ VVDLLLR GADETIV K+   AA  +         P D  R   LL  APADRAWRRRG L+LCRA+P R+
Sbjct:  281 AAVGQRHGSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDPEDDERARSLLARAPADRAWRRRGLLVLCRAHPDRL 362          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: A0A6H5KNN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.910e-12
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 3
Query: 1002 DAARVYKLLCNAPADRAWRRRGFLLLCRAYPKRVPPRL-DSSSTLVDAARTTHNEAKVPRLETICCGDDT-TVEESFGDSWADVAFKVLTLPGEDVFRAIVGYL 1307
            +   V++LL NAPADRAWRRRG L+LCRA+ +R   R  D   T    +R T + AK+ R + +  G  + T E   GD W   + +V+ L  E +FR++VG+L
Sbjct:   50 EVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRSGTPEGGTGDEWRSASRRVVELE-EGIFRSVVGFL 152          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 8.070e-12
Identity = 54/151 (35.76%), Postives = 70/151 (46.36%), Query Frame = 3
Query:  648 HVAAQFNRAEVIDALVDMGGNIEASNRIGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYP---GDAARVYKLLCNAPADRAWRRRGFLLLCRAY 1091
            HVAA  NR   ID LV+ G ++E  +   CT                                     A+  AG  +G +A+VD+LLR GADET ++     AA ++   +     P    D  RV  LL NAP DRAWRRRGFL+LCRA+
Sbjct:  144 HVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGR-QGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAF 293          
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.130e-11
Identity = 54/151 (35.76%), Postives = 70/151 (46.36%), Query Frame = 3
Query:  648 HVAAQFNRAEVIDALVDMGGNIEASNRIGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHASSVAGEARGTSAVVDLLLRLGADETIVDKRKTNAAGLLKKPLWPCLYP---GDAARVYKLLCNAPADRAWRRRGFLLLCRAY 1091
            HVAA  NR   ID LV+ G ++E  +   CT                                     A+  AG  +G +A+VD+LLR GADET ++     AA ++   +     P    D  RV  LL NAPADRAWRRRG L+LCRA+
Sbjct:  193 HVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGR-QGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAF 342          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL12_ECTSI1.750e-5550.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFR1_9PHAE9.020e-5284.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXK5_9PHAE3.600e-2345.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYD0_ECTSI3.270e-1840.38Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D7G137_ECTSI2.550e-1760.53Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G981_ECTSI1.460e-1338.16Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7G1U1_ECTSI2.540e-1251.22Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KNN1_9PHAE3.910e-1241.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6X8_ECTSI8.070e-1235.76Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KNU3_9PHAE2.130e-1135.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:258381..259854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size711
Model size1474
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
KEGG koko:K21440
Seed eggNOG ortholog2880.D8LL12
Seed ortholog evalue5.8e-20
Seed ortholog score104.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17421.1prot_E-siliculosus-1a_M_contig94.17421.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 258980..259690 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936496.5615637-UTR-E-siliculosus-1a_M_contig94:258380..2589791622936496.5615637-UTR-E-siliculosus-1a_M_contig94:258380..258979Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 258381..258979 +
1696251105.0581594-UTR-E-siliculosus-1a_M_contig94:258380..2589791696251105.0581594-UTR-E-siliculosus-1a_M_contig94:258380..258979Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 258381..258979 +
1622936496.5905936-UTR-E-siliculosus-1a_M_contig94:259690..2598541622936496.5905936-UTR-E-siliculosus-1a_M_contig94:259690..259854Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 259691..259854 +
1696251105.0811975-UTR-E-siliculosus-1a_M_contig94:259690..2598541696251105.0811975-UTR-E-siliculosus-1a_M_contig94:259690..259854Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 259691..259854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936496.5783901-CDS-E-siliculosus-1a_M_contig94:258979..2596901622936496.5783901-CDS-E-siliculosus-1a_M_contig94:258979..259690Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 258980..259690 +
1696251105.0709367-CDS-E-siliculosus-1a_M_contig94:258979..2596901696251105.0709367-CDS-E-siliculosus-1a_M_contig94:258979..259690Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 258980..259690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17421.1

>prot_E-siliculosus-1a_M_contig94.17421.1 ID=prot_E-siliculosus-1a_M_contig94.17421.1|Name=mRNA_E-siliculosus-1a_M_contig94.17421.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=237bp
MERTRRLLTMTATRPFHVAAQFNRAEVIDALVDMGGNIEASNRIGCTPLH
LACHMLRDQAVVALSKRGANINARDVVDQTPLQHASSVAGEARGTSAVVD
LLLRLGADETIVDKRKTNAAGLLKKPLWPCLYPGDAARVYKLLCNAPADR
AWRRRGFLLLCRAYPKRVPPRLDSSSTLVDAARTTHNEAKVPRLETICCG
DDTTVEESFGDSWADVAFKVLTLPGEDVFRAIVGYL*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig94:258381..259854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17421.1 ID=mRNA_E-siliculosus-1a_M_contig94.17421.1|Name=mRNA_E-siliculosus-1a_M_contig94.17421.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1474bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:258381..259854+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GACGCAGCATGCCCCCTCGAGGTTTCTTCAGCCGCCATACGTGCTCACAA AACGCTCTAGCAAACGAGCAAGGACGGAGAGCGCTAAAGGGAGCAGAGGG CGAAACGTTTGATCTCTTCTCGGAAGTCCTAACAGCAAGCGAGTGGGCGG AGATGCTGCAATTTCCACTTGAGTGTGCGGCCGCCCAGGGCAATGTGGCC CTCACACAAAAATTGCTGAGAGCGGGTGCCGACATGGGGAGTGCGCTTCA TGCAGCGTTCGGTACGGCCATGCAGAGGTCGTGACAAACCTGCTGGAGCA TAGGGCATGTGTCAGCATCAAGGATGCGCGCGGCAGTACCCCTCTCCAAG TTGCTGCCGTGTTTGGGTACACGGAGATTATCCAGTCGTTGTTACGGAAG GGGGCCAAACAAGACCTTCTGAATGCGCAGGAGTGTACGCCGCTGTACGG TGCGTTGTTATTTGGCCACCTTACTTCTGCACGAGCTCTCATGGCGGCTG GCGCAGACGTCAACGTGCGATGCGGTCTATTACAGAGGACGGTGCTGAGC CTGGCGGATGAAAAGGGTCAGGTGGACATCTTGAGAGCGCTTGTCAAGCA TGGAGCGGACCCGACGGCTGTTGACAATGACCGCGACACGGCCCTTTCAC GTTGCGGCACAGTTTAATCGAGCGGAGGTGATCGATGCGCTCGTCGACAT GGGGGGCAACATCGAAGCATCCAATCGAATCGGCTGCACACCTCTGCATC TTGCTTGTCACATGCTTCGTGACCAAGCCGTGGTTGCTCTCTCGAAGCGT GGTGCGAATATCAATGCCCGCGACGTTGTCGACCAAACACCGCTGCAGCA TGCATCATCTGTCGCCGGTGAAGCACGAGGAACCTCGGCGGTGGTAGACC TGTTGCTGAGGTTAGGCGCGGACGAGACGATCGTAGACAAGAGGAAGACA AACGCGGCGGGATTGCTCAAGAAACCTTTGTGGCCTTGCTTGTACCCAGG GGATGCTGCACGCGTGTACAAGTTGCTATGCAACGCGCCGGCCGACAGAG CATGGCGTCGCCGGGGCTTCCTTCTCCTATGCCGTGCCTATCCAAAAAGG GTGCCGCCGAGACTGGACAGCAGCAGCACCCTTGTCGATGCAGCACGGAC GACTCACAACGAGGCTAAGGTCCCAAGGTTAGAGACAATATGCTGCGGGG ATGACACGACGGTGGAGGAGAGCTTCGGTGACAGCTGGGCTGATGTAGCG TTCAAGGTGCTGACGCTGCCTGGGGAAGACGTATTCCGGGCGATCGTGGG GTACCTGTGAAGCTGGTGAGACGAACATTCCTCACACGCGCAAGGGGATT TCGCACAGAGTTGCCTGATGCACCATAGTCGTTTTCGAGCAAATTACGGC GTCCTGTTGTGTGTTCGTCGTGGTATCACCCGTAAACTCATCATATGGTG ACCGTTGCAGGTCGTGATCTACAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:258381..259854+

>mRNA_E-siliculosus-1a_M_contig94.17421.1 ID=mRNA_E-siliculosus-1a_M_contig94.17421.1|Name=mRNA_E-siliculosus-1a_M_contig94.17421.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1422bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:258381..259854+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGCGGACCCGACGGCTGTTGACAATGACCGCGACACGGCCCTTTCA
CGTTGCGGCACAGTTTAATCGAGCGGAGGTGATCGATGCGCTCGTCGACA
TGGGGGGCAACATCGAAGCATCCAATCGAATCGGCTGCACACCTCTGCAT
CTTGCTTGTCACATGCTTCGTGACCAAGCCGTGGTTGCTCTCTCGAAGCG
TGGTGCGAATATCAATGCCCGCGACGTTGTCGACCAAACACCGCTGCAGC
ATGCATCATCTGTCGCCGGTGAAGCACGAGGAACCTCGGCGGTGGTAGAC
CTGTTGCTGAGGTTAGGCGCGGACGAGACGATCGTAGACAAGAGGAAGAC
AAACGCGGCGGGATTGCTCAAGAAACCTTTGTGGCCTTGCTTGTACCCAG
GGGATGCTGCACGCGTGTACAAGTTGCTATGCAACGCGCCGGCCGACAGA
GCATGGCGTCGCCGGGGCTTCCTTCTCCTATGCCGTGCCTATCCAAAAAG
GGTGCCGCCGAGACTGGACAGCAGCAGCACCCTTGTCGATGCAGCACGGA
CGACTCACAACGAGGCTAAGGTCCCAAGGTTAGAGACAATATGCTGCGGG
GATGACACGACGGTGGAGGAGAGCTTCGGTGACAGCTGGGCTGATGTAGC
GTTCAAGGTGCTGACGCTGCCTGGGGAAGACGTATTCCGGGCGATCGTGG
GGTACCTGTGAATGGAGCGGACCCGACGGCTGTTGACAATGACCGCGACA
CGGCCCTTTCACGTTGCGGCACAGTTTAATCGAGCGGAGGTGATCGATGC
GCTCGTCGACATGGGGGGCAACATCGAAGCATCCAATCGAATCGGCTGCA
CACCTCTGCATCTTGCTTGTCACATGCTTCGTGACCAAGCCGTGGTTGCT
CTCTCGAAGCGTGGTGCGAATATCAATGCCCGCGACGTTGTCGACCAAAC
ACCGCTGCAGCATGCATCATCTGTCGCCGGTGAAGCACGAGGAACCTCGG
CGGTGGTAGACCTGTTGCTGAGGTTAGGCGCGGACGAGACGATCGTAGAC
AAGAGGAAGACAAACGCGGCGGGATTGCTCAAGAAACCTTTGTGGCCTTG
CTTGTACCCAGGGGATGCTGCACGCGTGTACAAGTTGCTATGCAACGCGC
CGGCCGACAGAGCATGGCGTCGCCGGGGCTTCCTTCTCCTATGCCGTGCC
TATCCAAAAAGGGTGCCGCCGAGACTGGACAGCAGCAGCACCCTTGTCGA
TGCAGCACGGACGACTCACAACGAGGCTAAGGTCCCAAGGTTAGAGACAA
TATGCTGCGGGGATGACACGACGGTGGAGGAGAGCTTCGGTGACAGCTGG
GCTGATGTAGCGTTCAAGGTGCTGACGCTGCCTGGGGAAGACGTATTCCG
GGCGATCGTGGGGTACCTGTGA
back to top