mRNA_E-siliculosus-1a_M_contig94.17418.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17418.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17418.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A6H5JAJ0_9PHAE (OHCU_decarbox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAJ0_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 2.370e-91
Identity = 142/161 (88.20%), Postives = 150/161 (93.17%), Query Frame = 2 
Query:   26 MEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETDCIF 508
            MEALQALPRHELRQ LLRCCHSNAWADAVLGRMPFKSEEEA+ AMDDCWAKL+PADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNE+YRQKNGFVFLVCASG+PADAILALLKARLPNDRDTE+   + E ++ T   F
Sbjct:    1 MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEAQAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEEYRQKNGFVFLVCASGMPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRF 161
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: UPI00199ADACE (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI00199ADACE)

HSP 1 Score: 131 bits (329), Expect = 4.890e-32
Identity = 70/157 (44.59%), Postives = 95/157 (60.51%), Query Frame = 2 
Query:   26 MEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRET 496
            +EAL  L     R+ L RCC ++ W D +L   PF ++    +A D  WA    +D+LEA   +P IGD+ + R KFA S + W   EQ+ A+ A+EAVL  LS+ N  Y  K GF+F+VCA+G  AD +LALL+ARLPNDR TE+    GE  + T
Sbjct:    4 VEALTGLTEPAWREMLTRCCGASHWVDGMLVLRPFSTDTALMKAADQVWAGTGESDWLEAFTHYPKIGDRDSRRQKFA-STAEWASHEQSGASAANEAVLTALSDGNLNYEAKFGFIFIVCATGKSADEMLALLQARLPNDRATELQIAAGEQHKIT 159
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A2A4VT63_9GAMM (OHCU decarboxylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2A4VT63_9GAMM)

HSP 1 Score: 126 bits (317), Expect = 2.530e-30
Identity = 69/159 (43.40%), Postives = 95/159 (59.75%), Query Frame = 2 
Query:   35 LQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETDCIFE 511
            L  LP+ + +  L++ C S  W + +L R PF   +   +A D  W  LT ADYL+A   HP IGD  +LR K+A +++     EQ+A   A EAVL +L+  NE+Y  K GF+F+VCA+G  A+ +LALLKARLPNDR TE    L   + E   IF+
Sbjct:   11 LNNLPQEQAKAILMQMCTSETWCERILQRRPFADLQALVQAADLAWQNLTEADYLQAFDGHPKIGDVNSLRAKYANTKA-LASGEQSAVNNADEAVLHDLAIFNEQYHAKFGFIFIVCATGKSAEQMLALLKARLPNDRTTE----LNNAEVEQGKIFQ 164
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A7S2UY41_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY41_9STRA)

HSP 1 Score: 126 bits (316), Expect = 6.150e-30
Identity = 70/147 (47.62%), Postives = 90/147 (61.22%), Query Frame = 2 
Query:   71 LLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCW-----AKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRET 496
            L RCCHSN WA  VL   PF+S+++  E MD  W     A   P D+LEA AAHP IGD++A+  K A   SG+E +EQ  A GAS+ V   L+E NEKY +K GF+FL+CA+G  A  +L  L+ R  ND D E+    GE Q+ T
Sbjct:   30 LKRCCHSNTWARLVLSSRPFESKDDLLEKMDLFWGLGASAYCGPQDWLEAFAAHPKIGDQKAVEKKEA-HHSGFESEEQKGAEGASDDVKSSLAEWNEKYFEKFGFIFLICATGKSAAEMLQALQDRYSNDADKEIRVAAGEQQKIT 175
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A1D2AEV0_AUXPR (OHCU_decarbox domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AEV0_AUXPR)

HSP 1 Score: 123 bits (308), Expect = 8.600e-29
Identity = 65/147 (44.22%), Postives = 91/147 (61.90%), Query Frame = 2 
Query:   62 RQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTP-ADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETD 499
            R+ LL CCHS AWADAVL + PF+S E+  E     W   TP   +LEA AAHP +GD++ L  +   + S     EQ++AAGA+EA L  L++ N +Y  + G +F+ CA+G PAD +LA++K R  ND  TE+S   GE  + T+
Sbjct:    7 RETLLTCCHSGAWADAVLAKQPFQSMEKLIEGARSAWWNETPITGWLEAFAAHPRLGDRRGLAQRSG-AFSDLSRDEQSSAAGAAEATLAALTDWNARYEARFGHIFIACAAGTPADRMLAMVKQRYTNDPATELSVAAGEQMKITE 152
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A4Q5PXQ2_9BACT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q5PXQ2_9BACT)

HSP 1 Score: 120 bits (302), Expect = 2.820e-28
Identity = 59/163 (36.20%), Postives = 93/163 (57.06%), Query Frame = 2 
Query:   23 SMEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETDCIFE 511
            S+E L       L++  L+CC SN+WA+ ++ + PF  +E+  +  D  W +L  AD+LEA A HP IGD  +L  KFA ++  W + EQ+    A +  ++EL+E N+KY  K  ++F+VCA+G  A  +L +LK+R+ ND   E+     E  + T    E
Sbjct:    2 SIEKLNNTESQILKEEFLKCCGSNSWAEKLVEQRPFSDQEDLFKKSDSIWEQLDKADFLEAFAQHPKIGDINSLAKKFAHTKQ-WAENEQSGVDSAPDKTIEELAEYNKKYEDKYSYIFIVCATGKSAQEMLDILKSRINNDPQLELKTAANEQNKITKIRLE 163
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: UPI000B7CB895 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Entotheonella palauensis TaxID=93172 RepID=UPI000B7CB895)

HSP 1 Score: 121 bits (303), Expect = 3.490e-28
Identity = 64/164 (39.02%), Postives = 91/164 (55.49%), Query Frame = 2 
Query:   23 SMEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETDCIFET 514
            S++ +  + R  L+  L RCC +  W   ++ + PF      ++  DD W  L PAD+ EA A HP IGD  +LR KFA + S W ++EQA    A+EAVL  L++ N  Y +K G++F+VCA+G  A  +L LL  RLPND   E+     E +R      ET
Sbjct:    4 SIDVVNNMERTALQTLLARCCGATRWVSGMIDQRPFTDWPHLQQVADDIWRTLAPADWREAFAQHPKIGDLDSLRAKFASTES-WSEREQAGVQDATEAVLQGLAQGNRDYERKFGYLFIVCATGKSATEMLELLWQRLPNDPPDELPIAAEEQRRIMQIRLET 166
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A562T3E8_CHIJA (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Chitinophaga japonensis TaxID=104662 RepID=A0A562T3E8_CHIJA)

HSP 1 Score: 119 bits (298), Expect = 9.810e-28
Identity = 65/163 (39.88%), Postives = 90/163 (55.21%), Query Frame = 2 
Query:   23 SMEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETDCIFE 511
            ++ AL +LP  EL++AL RCC + AW   +  R P K  E    A    W   T AD+ EA A HP IGD  ALR+KFA +   W   EQ+A   A EA L  L+  N +Y +K G++F+VCA+G PA  +L  L+ RLP+    E+   + E ++ T    E
Sbjct:    2 TVAALNSLPLQELQEALRRCCGATAWVAGMCARFPVKDAETLFSAASAIWRNCTEADWKEAFAHHPQIGDLSALREKFAATAQ-WAAGEQSAVQQADEATLQALAAGNRQYLEKFGYIFIVCATGKPAADMLQQLQERLPHTPQQEIRIAMQEQEKITKLRLE 163
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A0D8CQQ8_9GAMM (OHCU decarboxylase n=1 Tax=Thalassomonas actiniarum TaxID=485447 RepID=A0A0D8CQQ8_9GAMM)

HSP 1 Score: 119 bits (297), Expect = 1.390e-27
Identity = 63/157 (40.13%), Postives = 96/157 (61.15%), Query Frame = 2 
Query:   23 SMEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRE 493
            +++ L  LP  +   A ++CC ++ W  A++   PF  E    +A D  W  L+ +DYLEA   HP IGD  +LR K+A +++     EQ+A   ASE VL++L++ N  Y  K GF+F+VCA+G  A+ +LALL+ARLPN+R  E++    E QR+
Sbjct:    2 TLQELNLLPESDASHAFMQCCTASTWVKAMVQSRPFADEAALYQAADQHWQGLSESDYLEAFEGHPKIGDVNSLRAKYANTKA-LASGEQSAVNVASEQVLNDLAKGNSDYETKFGFIFIVCATGKSAEQMLALLQARLPNERAQELA-NAAEEQRK 156
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Match: A0A1D1ZY42_AUXPR (Hydroxyisourate hydrolase n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZY42_AUXPR)

HSP 1 Score: 123 bits (308), Expect = 1.480e-27
Identity = 65/147 (44.22%), Postives = 91/147 (61.90%), Query Frame = 2 
Query:   62 RQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWAKLTP-ADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRLGEVQRETD 499
            R+ LL CCHS AWADAVL + PF+S E+  E     W   TP   +LEA AAHP +GD++ L  +   + S     EQ++AAGA+EA L  L++ N +Y  + G +F+ CA+G PAD +LA++K R  ND  TE+S   GE  + T+
Sbjct:    7 RETLLTCCHSGAWADAVLAKQPFQSMEKLIEGARSAWWNETPITGWLEAFAAHPRLGDRRGLAQRSG-AFSDLSRDEQSSAAGAAEATLAALADWNARYEARFGHIFIACAAGTPADRMLAMVKQRYTNDPATELSVAAGEQMKITE 152
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAJ0_9PHAE2.370e-9188.20OHCU_decarbox domain-containing protein n=2 Tax=Ec... [more]
UPI00199ADACE4.890e-3244.592-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A2A4VT63_9GAMM2.530e-3043.40OHCU decarboxylase n=1 Tax=Gammaproteobacteria bac... [more]
A0A7S2UY41_9STRA6.150e-3047.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1D2AEV0_AUXPR8.600e-2944.22OHCU_decarbox domain-containing protein n=1 Tax=Au... [more]
A0A4Q5PXQ2_9BACT2.820e-2836.202-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
UPI000B7CB8953.490e-2839.022-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A562T3E8_CHIJA9.810e-2839.882-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A0D8CQQ8_9GAMM1.390e-2740.13OHCU decarboxylase n=1 Tax=Thalassomonas actiniaru... [more]
A0A1D1ZY42_AUXPR1.480e-2744.22Hydroxyisourate hydrolase n=2 Tax=Auxenochlorella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:238836..243205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size591
Model size1712
Exons5
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.A
EC3.5.2.17,4.1.1.97
EggNOG OGsCOG2351@1,KOG3006@2759
EggNOG free text desc.thyroid hormone binding
GOsGO:0000255,GO:0001558,GO:0001560,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0006139,GO:0006144,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009605,GO:0009719,GO:0009725,GO:0009741,GO:0009742,GO:0009755,GO:0009898,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016020,GO:0016043,GO:0016787,GO:0016810,GO:0016812,GO:0016829,GO:0016830,GO:0016831,GO:0017144,GO:0018130,GO:0019428,GO:0019897,GO:0019898,GO:0022607,GO:0023052,GO:0031234,GO:0031668,GO:0032870,GO:0033971,GO:0033993,GO:0034641,GO:0040008,GO:0042221,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043401,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046483,GO:0048545,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0051997,GO:0055086,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071367,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0098552,GO:0098562,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701
KEGG ModuleM00546
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ReactionR06601,R06604
KEGG TC9.B.35.1.2,9.B.35.1.3,9.B.35.2
KEGG koko:K07127,ko:K13484
KEGG rclassRC01551,RC03393
Seed eggNOG ortholog2880.D7FIQ6
Seed ortholog evalue2.1e-76
Seed ortholog score292.0
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936495.9219458-UTR-E-siliculosus-1a_M_contig94:238835..2388601622936495.9219458-UTR-E-siliculosus-1a_M_contig94:238835..238860Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 238836..238860 +
1696251104.7358642-UTR-E-siliculosus-1a_M_contig94:238835..2388601696251104.7358642-UTR-E-siliculosus-1a_M_contig94:238835..238860Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 238836..238860 +
1622936496.0281997-UTR-E-siliculosus-1a_M_contig94:242109..2432051622936496.0281997-UTR-E-siliculosus-1a_M_contig94:242109..243205Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 242110..243205 +
1696251104.804614-UTR-E-siliculosus-1a_M_contig94:242109..2432051696251104.804614-UTR-E-siliculosus-1a_M_contig94:242109..243205Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 242110..243205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936495.9435902-CDS-E-siliculosus-1a_M_contig94:238860..2389131622936495.9435902-CDS-E-siliculosus-1a_M_contig94:238860..238913Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 238861..238913 +
1696251104.7496867-CDS-E-siliculosus-1a_M_contig94:238860..2389131696251104.7496867-CDS-E-siliculosus-1a_M_contig94:238860..238913Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 238861..238913 +
1622936495.965122-CDS-E-siliculosus-1a_M_contig94:240075..2401881622936495.965122-CDS-E-siliculosus-1a_M_contig94:240075..240188Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 240076..240188 +
1696251104.7603652-CDS-E-siliculosus-1a_M_contig94:240075..2401881696251104.7603652-CDS-E-siliculosus-1a_M_contig94:240075..240188Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 240076..240188 +
1622936495.9797196-CDS-E-siliculosus-1a_M_contig94:240691..2408161622936495.9797196-CDS-E-siliculosus-1a_M_contig94:240691..240816Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 240692..240816 +
1696251104.7710688-CDS-E-siliculosus-1a_M_contig94:240691..2408161696251104.7710688-CDS-E-siliculosus-1a_M_contig94:240691..240816Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 240692..240816 +
1622936495.9957893-CDS-E-siliculosus-1a_M_contig94:241120..2413081622936495.9957893-CDS-E-siliculosus-1a_M_contig94:241120..241308Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 241121..241308 +
1696251104.7818918-CDS-E-siliculosus-1a_M_contig94:241120..2413081696251104.7818918-CDS-E-siliculosus-1a_M_contig94:241120..241308Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 241121..241308 +
1622936496.0100422-CDS-E-siliculosus-1a_M_contig94:241997..2421091622936496.0100422-CDS-E-siliculosus-1a_M_contig94:241997..242109Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 241998..242109 +
1696251104.7944648-CDS-E-siliculosus-1a_M_contig94:241997..2421091696251104.7944648-CDS-E-siliculosus-1a_M_contig94:241997..242109Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 241998..242109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17418.1prot_E-siliculosus-1a_M_contig94.17418.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 238861..242109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17418.1

>prot_E-siliculosus-1a_M_contig94.17418.1 ID=prot_E-siliculosus-1a_M_contig94.17418.1|Name=mRNA_E-siliculosus-1a_M_contig94.17418.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=197bp
MEALQALPRHELRQALLRCCHSNAWADAVLGRMPFKSEEEAREAMDDCWA
KLTPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVL
DELSELNEKYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEVSWRL
GEVQRETDCIFETQSKSNGRSLSFGLLDSSRKSHRLPPLGGVAIQI*
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mRNA from alignment at E-siliculosus-1a_M_contig94:238836..243205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17418.1 ID=mRNA_E-siliculosus-1a_M_contig94.17418.1|Name=mRNA_E-siliculosus-1a_M_contig94.17418.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4370bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:238836..243205+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCAGCCACTCTCTTTTCCCTGCTCCATGGAGGCGTTGCAGGCGTTGCCGC
GCCATGAGCTTCGGCAAGCGCTCCTCAGGTATCTGCTATGGTTGATCGCC
TCCAGGTTTTTATCAAGATCAAGAAAATATGCGTACGTCTACTATTGACA
TTGTGGAAGTGAGGTTACTTAACCCGTGTACCTGTCTGAGACACATGTGA
CGCAGTATAGCACCCCCCCTCATTGGGAGCGATTTCAAGCCCGTTCTCTG
TTTTCATAACAATACAAGAGGCCCCGATTTTAGGAGCATAGGGTAAAAAA
CTTTGTCTAGGTCTCTGTGGAAACCTGGCGATGCTGTCGATGTAACGAAA
TCGGGTGGCACCAAAACTATTGAAAACTCCGCAGGGGGGGTGGTATACTG
CATCCCAAAGAGGTGGTACATGTTGATACGAAAGCACTTGTTGGGCAGAG
ACGAATATACAAGTATAGTTCACAGTACAACGCAAGCATACAGTGAAGCA
GCATTTCTTGGATAGTTCCCACCGCTTTGGGTGTATTTGGTCCTGGTAGT
CGAACGGTTGCGATTTTTTTTTGCCGCGTGTTTTCGATGGAGAACTCAAA
TGTTCTGCCACGGTCGCAACTTATTGTGGGCAGGACTTCCTGTGTATCCC
ATGGAAGCAGTGCAACCCTTGAAATGGTGGCGGCTTCACTGTTGTACTTA
CTTCTGTTAAGCGACCTGTGTATAACGCAAACACCACCCATCCATACGAT
CGCGATGTTTGCTGCTCCTGCCCTCCCTTTGTAAGGCTGTACATGAACAA
GTGGCAGCCCGTTATCCATTGTGCGTACTTTCATTATCAGACTCGAAGTA
TTTGACCGAAGCCTGGCATCCAGACGGACATGCTGCAGACCAGAGAGCAC
TTCCTCGTACAAACTAGCGCAAGAGTGTCACCTCATTCGATGGGGTTCGA
CGCCGAGGCGTGGCCACACCCAAGCCTTGGGCACAAGCGGCCAAGTATGA
ACCCCGTCTGACTGATGTATCAGCATTGACATGGCCCTAGACGAGACGTT
TTCTCACACAAATAGCCCTTTGGTGTGTATCGAAGGCTTTACCAGGTGCT
ACCTCCCCCCCCCCCTCCCCCGACCGCGAGATGTCCCGCATTGCGAGGTT
TCTAGCAAGCCCTTTTATCACTATAAGGGTTTGCCAGTGTTGGTGACCCG
ACCCACGCCCCTACGTCACGTATTCCTTTCCTTACGTCAGGTGCTGCCAT
TCCAACGCGTGGGCGGACGCAGTTTTGGGCAGGATGCCTTTCAAGTCCGA
GGAGGAAGCTCGAGAGGCGATGGATGATTGCTGGGCCAAGCTGACGCCAG
CCGGTGCGGTGCGCTGCTACGCGTGACAGCAGTCCGTTTAGTGTTAGAAA
AGCGGGCCTCTGTGTGTGGGCGGGGGGTGGAGTCTGAACGAGTGTGCGCA
AGACTTTATCGAGATGATACGGGTGTGGCGTTAGATGGATGCTGCCTCCA
CCAGAGCACCGGTCGCTGGAATTTTCGGCTCTCGCGAGTGCTCGTCGCGA
ATACTGCCGCTACATGCGGTTGAGTCTATCCTCTCGCCACTTCTGAAAAT
TCGGTCGGTCTACAGTAATGGCGTGCTTGTTCTCGCTCTGTTGAGCCAGC
TGGTGGGACAAACTAGAAGCGCGCAGTATTCTGCGTTCGACCCGTGACAT
CAAAGAAAACCAACTATCCAACAAAGCTCCCCAGACCCCGCCTTCATCAC
AAGCAATGCACCGCTTCGTTCCTGTCCCATCCGCCATCGTCGCGTAGAGT
TCAGCGTAAAATCCCGAATGTAACGCGTTAAGGATGTGTGGCGATGAATC
CGGCAGATTACTTGGAGGCGGTCGCGGCGCACCCGGCCATCGGAGACAAG
CAGGCGTTGCGGGACAAGTTCGCCCCTTCGAGGTCCGGGTGGGAAGACAA
AGAACAAGCGGCAGCAGCAGGGGCGAGCGAGGTATGGTACGGTGTTTGAT
CGACATCGTTTCTGCTGTGCCCGTGCGTGCAGGGTTTGGTTTATCGAGTG
GACGCGAATGTATAGCTGCTGTCATCTGCTCGAATCTCAATGGCTCATTT
CTTGGCAGGTCCATGCAAGGGGTTGGGCAAGGTTTTGTCACCCGCCTAGT
TGGTTGCAGGATGAGCACATAGCGACTGTTGGCGCATTCTCTAGATGAGT
GATGTTGAACACCGCGCGACCAGAACCATGCACCCATAACGCTGCCCGCC
CCGCCTTTTGCGTGATCCGTGCTGATGATGGCAAGGCCGTCCTAGACGAG
CTTTCCGAGCTAAACGAGAAATACCGACAAAAGAATGGTTTCGTTTTTCT
TGTCTGCGCCTCGGGCCTGCCCGCGGACGCAATTCTGGCCCTCCTGAAGG
CGCGCTTGCCTAACGACAGGGATACAGAGGTGAGCTGGCGATTGGGTGAA
GTACAGCGAGAGACCGACTGCATGTGTGGGTGACGGGGGTGCTAATACTA
ATAGTCTTGCTTTGCTGAGTCGCTTGACCTTTGGCAACGCAGCTCTTTTG
ATGCGGGGCACCGCCTGTTCCTTCGCCTAAGAGACACCCCACCGGCAACG
CTCGGGCGGTATTGGTGCTCCTGCCGTGCTCTTCATGGGAACTCCTCGTT
AACCTTGTTTCCCTTCTTTGTTGGGTACAAGTAGTGGTTGGGGAGCTGGG
GCATCAATTTGGGGCCTGCCTGCCTTGATTGCTTTGATCGTTTTCCTCGC
ACCCCTTTCGACATGAACCTTAGTCTCCGAAAGGGAACGGGTGGTTTTTT
GGTTTTGGTAAGAATCAGTCTACAATTGTAGCGCACCTTCCCGCGGATGG
TGTGTAGTGATGATGGTGAACAGAGGAGGCAAGGCGAACGGGGTTGCGGC
GAGTATCGAGGACCCCGAGTTTGGGGGGGAAATAGTCCATGTGTCAGTAG
TACGCACGAAACGTTGCCCACACGAGATACACCCGAAACCGTGCTCTTGC
TGATGATTGGTGCGTGTGCGTGAACCGGAACGTCTAGCGCGCCAACAGAC
GCTTGCCGCGGGCTGCCTGGAGGTTGCTGCCACCTACCCACGCGGCCTCT
CATACGCGCATGGCTGCTGACGACTGCTGTTGCTTTTCTTTTTTTGTTGC
TCCATGAAACAGATTCGAAACGCAGTCGAAGAGCAACGGAAGATCACTCA
GCTTCGGTTTGCTCGACTCCTCACGGAAATCTCACCGCCTGCCACCGCTG
GGGGGGGTAGCGATACAAATATAAGGTCAACACCCTCTGGTAGTTCGCGA
CTGTAGGAGTATCATTTCTCTCTTTTTTTTTCTCGGTTGGTGGGTTTACG
AAACACTTTGTTCCGCCCCCGTACATTGGCGGGCACGCCGCATCTATCCA
CACAATTTTCACGAATATGTGTCTTGTACAGGGTGGCGTGGGCTATTGTT
TGGGCGACATAGCCTATTAATATATAATAATAGTATTGGCATGTGTTTTT
GATGTTGTCCTACAATGATTTGTTCCACGTTTCCAAACAACCTTGTTTTG
AGTAACGACCGTGCTGGGGCAAGTTCCTGTTTTTGTGTACTCCGTATGAT
TTACCGCCGTGGTTGGTGTGTTTGTGCAGAAACATAGGGCAGAGGTACCA
AAGCACTGCTGGTTGTGGCAGGTCCAGAGGGATGGCCCGCGCTTCTCGAT
TACATGCTTTGTCTTTTATCCAGGGATGATTCAAAGTTGGTTGGATTGTC
GTTTTCTGTGGTGGAGTTAGCAAGCAACGTTTTTGTATCGTGTTTTTGCC
CCTCCTTTCATCGGTGTCTCTGCACGTACTTGCACCGTTCCTGCTGTGCT
TTCGTCGCAGATGAGACGAAAAACGTTCGATGCCAAAGGCTGCCGCGGCT
GAGTTTCGTACCTGAACTTCTTCCCAACAGCGGAGGAATTTTTCTCTCCA
GACCGCGTGGATGACCTGTTGCTAGTGCGTCAGGATATTGTTCATCTAGT
TTGAGCTAGATTAGATGCTTGTACATAAATCCGACGAAACTGTGTATGTG
TGCTCGAATTACAATCGTTTTTGCGTACAACCTCTGGAGAAACCAGTACA
CCGTCAGCCGTGTTGTTTTGGGGCTGTTGGCGTATCGTTCCGGTGTTTGT
TGTGCCTTGGTCGTAGATAGATGCACATTCGCCGCACCAGCATCAGGCAA
CAATTAGGAAAATCTCAAGGGTTCGCGCGCCGCGCTTGTGGCGGTGGTTG
TCTTGTCACTTGCTGTGCGCAACACTCGTTTAGTCCAGGGAACCCCCCTT
TCTTGAAGCATCACTTGTTCGACTATATGGGACAAGAGTGTGCACGTAGA
GGTACAGAGTAATTCGTTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:238836..243205+

>mRNA_E-siliculosus-1a_M_contig94.17418.1 ID=mRNA_E-siliculosus-1a_M_contig94.17418.1|Name=mRNA_E-siliculosus-1a_M_contig94.17418.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1182bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:238836..243205+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGGCGTTGCAGGCGTTGCCGCGCCATGAGCTTCGGCAAGCGCTCCT
CAGATGGAGGCGTTGCAGGCGTTGCCGCGCCATGAGCTTCGGCAAGCGCT
CCTCAGGTGCTGCCATTCCAACGCGTGGGCGGACGCAGTTTTGGGCAGGA
TGCCTTTCAAGTCCGAGGAGGAAGCTCGAGAGGCGATGGATGATTGCTGG
GCCAAGCTGACGCCAGCCGGTGCTGCCATTCCAACGCGTGGGCGGACGCA
GTTTTGGGCAGGATGCCTTTCAAGTCCGAGGAGGAAGCTCGAGAGGCGAT
GGATGATTGCTGGGCCAAGCTGACGCCAGCCGATTACTTGGAGGCGGTCG
CGGCGCACCCGGCCATCGGAGACAAGCAGGCGTTGCGGGACAAGTTCGCC
CCTTCGAGGTCCGGGTGGGAAGACAAAGAACAAGCGGCAGCAGCAGGGGC
GAGCGAGATTACTTGGAGGCGGTCGCGGCGCACCCGGCCATCGGAGACAA
GCAGGCGTTGCGGGACAAGTTCGCCCCTTCGAGGTCCGGGTGGGAAGACA
AAGAACAAGCGGCAGCAGCAGGGGCGAGCGAGGCCGTCCTAGACGAGCTT
TCCGAGCTAAACGAGAAATACCGACAAAAGAATGGTTTCGTTTTTCTTGT
CTGCGCCTCGGGCCTGCCCGCGGACGCAATTCTGGCCCTCCTGAAGGCGC
GCTTGCCTAACGACAGGGATACAGAGGTGAGCTGGCGATTGGGTGAAGTA
CAGCGAGAGACCGACTGCATGCCGTCCTAGACGAGCTTTCCGAGCTAAAC
GAGAAATACCGACAAAAGAATGGTTTCGTTTTTCTTGTCTGCGCCTCGGG
CCTGCCCGCGGACGCAATTCTGGCCCTCCTGAAGGCGCGCTTGCCTAACG
ACAGGGATACAGAGGTGAGCTGGCGATTGGGTGAAGTACAGCGAGAGACC
GACTGCATATTCGAAACGCAGTCGAAGAGCAACGGAAGATCACTCAGCTT
CGGTTTGCTCGACTCCTCACGGAAATCTCACCGCCTGCCACCGCTGGGGG
GGGTAGCGATACAAATATAAATTCGAAACGCAGTCGAAGAGCAACGGAAG
ATCACTCAGCTTCGGTTTGCTCGACTCCTCACGGAAATCTCACCGCCTGC
CACCGCTGGGGGGGGTAGCGATACAAATATAA
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