mRNA_E-siliculosus-1a_M_contig94.17402.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17402.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17402.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17402.1 vs. uniprot
Match: D7FIN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIN9_ECTSI)

HSP 1 Score: 476 bits (1225), Expect = 7.280e-166
Identity = 265/275 (96.36%), Postives = 269/275 (97.82%), Query Frame = 1 
Query:  244 RPRQSAWTVRGGYKHGSSATASSSGSNSSNSVGQDGFPPRGETTAVDSNMDKLAADLRATRXXXXXXXXXXXXXXXXXXXXXXXKIVDEVLRERSPEAFGELGGHASSYDSATAGMDVANRRSFFLGIRRVLLLVQVVELLAACMWQAAFPFGGLAGFITAASTTNGEGDTPNTAVLATLRDIFAGEAGDGRGPLGLALAACLAQFSVYTMLLVWFGCDRVVLRGVRVTAWEHGAAAVWALTRLMTGPGGKLTHLLACAWLAGMAFLCAYFGRQL 1068
            RPRQSAWTVRGGYKHGSSATAS+SGSNSSNSVGQDGFPPRGETTAVDSN+DKLAADLRATR  XXXXXXXXXXXXXXXXXXXXXKIVDEVLRERSPEAFGELGGHASSYDSATAGMDVANRRSFFLGIRRVLLLVQVVELLAACMWQAAFPFGGLAGFITAAST NGEG TPNTAVL TLRDI AGEAGDGRGPLGLALAACLAQFSVYTMLLVWFGCDRVVLRGVRVTAWEHGAAAVWALTRL+TGPGGKLTHL+ACAWLAGMAFLCAYFGRQL
Sbjct:    2 RPRQSAWTVRGGYKHGSSATASNSGSNSSNSVGQDGFPPRGETTAVDSNIDKLAADLRATRDHXXXXXXXXXXXXXXXXXXXXXKIVDEVLRERSPEAFGELGGHASSYDSATAGMDVANRRSFFLGIRRVLLLVQVVELLAACMWQAAFPFGGLAGFITAASTMNGEGGTPNTAVLDTLRDIVAGEAGDGRGPLGLALAACLAQFSVYTMLLVWFGCDRVVLRGVRVTAWEHGAAAVWALTRLLTGPGGKLTHLVACAWLAGMAFLCAYFGRQL 276
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIN9_ECTSI7.280e-16696.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:109596..112967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1068
Model size1320
Exons2
Ec32 orthologEc-27_000470.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17402.1prot_E-siliculosus-1a_M_contig94.17402.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 109599..112718 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936492.4316287-UTR-E-siliculosus-1a_M_contig94:109595..1095981622936492.4316287-UTR-E-siliculosus-1a_M_contig94:109595..109598Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 109596..109598 +
1696251102.7893581-UTR-E-siliculosus-1a_M_contig94:109595..1095981696251102.7893581-UTR-E-siliculosus-1a_M_contig94:109595..109598Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 109596..109598 +
1622936492.480334-UTR-E-siliculosus-1a_M_contig94:112718..1129671622936492.480334-UTR-E-siliculosus-1a_M_contig94:112718..112967Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 112719..112967 +
1696251102.8263106-UTR-E-siliculosus-1a_M_contig94:112718..1129671696251102.8263106-UTR-E-siliculosus-1a_M_contig94:112718..112967Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 112719..112967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936492.4457211-CDS-E-siliculosus-1a_M_contig94:109598..1101801622936492.4457211-CDS-E-siliculosus-1a_M_contig94:109598..110180Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 109599..110180 +
1696251102.8049004-CDS-E-siliculosus-1a_M_contig94:109598..1101801696251102.8049004-CDS-E-siliculosus-1a_M_contig94:109598..110180Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 109599..110180 +
1622936492.46273-CDS-E-siliculosus-1a_M_contig94:112232..1127181622936492.46273-CDS-E-siliculosus-1a_M_contig94:112232..112718Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 112233..112718 +
1696251102.8155706-CDS-E-siliculosus-1a_M_contig94:112232..1127181696251102.8155706-CDS-E-siliculosus-1a_M_contig94:112232..112718Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 112233..112718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17402.1

>prot_E-siliculosus-1a_M_contig94.17402.1 ID=prot_E-siliculosus-1a_M_contig94.17402.1|Name=mRNA_E-siliculosus-1a_M_contig94.17402.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=356bp
MHHPTAHHLTTLCDLTTHTMPPRYGNTPAKRLRFVGATLACLTLMSTGAS
VIDETYSHQHCSLQRRSRTLRSGAQAWSRTRPRQSAWTVRGGYKHGSSAT
ASSSGSNSSNSVGQDGFPPRGETTAVDSNMDKLAADLRATRDHIAADIHA
RGEAIAADLKGKQEKIVDEVLRERSPEAFGELGGHASSYDSATAGMDVAN
RRSFFLGIRRVLLLVQVVELLAACMWQAAFPFGGLAGFITAASTTNGEGD
TPNTAVLATLRDIFAGEAGDGRGPLGLALAACLAQFSVYTMLLVWFGCDR
VVLRGVRVTAWEHGAAAVWALTRLMTGPGGKLTHLLACAWLAGMAFLCAY
FGRQL*
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mRNA from alignment at E-siliculosus-1a_M_contig94:109596..112967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17402.1 ID=mRNA_E-siliculosus-1a_M_contig94.17402.1|Name=mRNA_E-siliculosus-1a_M_contig94.17402.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3372bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:109596..112967+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCGATGCATCACCCAACTGCCCACCACTTGACAACTCTGTGTGATTTGAC
GACACACACCATGCCACCACGTTACGGCAACACCCCCGCCAAGAGGCTTC
GATTCGTAGGGGCTACTTTGGCCTGCCTTACGCTGATGTCCACTGGAGCC
TCAGTAATCGACGAAACATATTCCCACCAGCATTGCTCCCTGCAACGGCG
TTCGAGAACGCTCCGGTCTGGTGCTCAGGCTTGGTCACGGACGCGGCCCC
GACAGAGTGCTTGGACGGTTCGTGGAGGGTACAAGCACGGTAGCAGTGCC
ACCGCCAGCAGCAGTGGCAGCAACAGCAGCAATAGTGTGGGGCAAGATGG
GTTTCCGCCACGCGGCGAAACCACAGCAGTAGACAGCAACATGGACAAGT
TGGCAGCGGATCTTCGAGCGACGAGGGATCACATCGCCGCTGATATCCAT
GCTCGTGGAGAGGCTATTGCAGCAGATCTCAAGGGCAAGCAGGAGAAGAT
TGTGGATGAAGTGCTCAGGGAACGCTCACCCGAGGCCTTTGGCGAGCTTG
GAGGACATGCCTCGTCTTACGATTCAGCGACAGCGGTAAGCAGAGCAGCA
GTACAAACATGTGTAGACATGCCTCGTTCTTACGATTCAGCGACAGCGGT
AAGCAGAGCAGCAGTACAAACATGTGTAGACCAAAGAGAGGCCGCGATTG
AACAGGTGCCAGCCCTCGCACCCATCCGCCCCCCGTTATGTAGCTTACTC
TATTTTGACAGGACAGATGGGGGGTGCATGTATGCATCGCATGTTACAAG
CCTTCGGAGTCATCGCACACATTCGGGTAATGGAAGATTTTGAAATTCCC
AGCGGTAACCACTGGTGTTCGAAGCTAGTCTATGCTTCATACACATGAGG
CGGGGTATTAAAACCCTCGTGTCTCGGCAGTGCTGACTGATCGTTGATTG
ACAATTAGCAAGAGCTAGTGTGGTGGCAACCCGTGGAATTACCGACCTGT
AGCCCTCCACGTCGGATGTTGGCAAGTCTGTTGGTGTGTGCTGGTGTGCT
TGTGGGGAGAAAGGGGCTCTGCAGACAAGCAGGGCTCACGTTGGGGGGGG
AGGCAGAGAAGTATAGAGTCCAGAAGTAGATTTGCAGCAGTTTCGGTTTT
TCACGGGGCCTTCTCACCGATCATTTCGAATGAAATATTTGGAATGTACT
GAAAAGAGGGTAGTTTAGGGGAGGTGCAGGACTGATCAGTTTATGTTCTT
CGCATTGCCAGCCGCACCGCGGCCACGCAACAACCCTTATAACGTGACCC
TATGCATATGAGTTAACACTACAGTCGCCGGCATCTCTCATGGTCTGTGC
AGAGTAGTACACGTGTCTGCTTTCCTGCACTTTCCTCTCTCTCCCGCACT
CTCTCCCACTTCTTTTTTTGCGTCTGCGTTGAAAAAAAAAAGGAACGTCA
AGCGGAACCAGGACTGACAGTCTTGCCGACGAGTAGCCAGACACCTATCG
TACAAAGGAAAAGCGTTTCGCAGAAACACCAAAACACCTTGAACGTAGAG
TGAGGGATTCGCCACAAATGTCGAAGGGAGATAGGTTTGATATCAACCGT
CGTTTACGGTAGTTTTGGGTGTCTAGATATACACAAATTGCTATCTAAAT
GAATCTAAGTCATACAGCATGTATGCAGCAGCAGAGAAGGGTGCCGCTCT
CTGTCTGGAGCATGCGAATCGAGTGGCGACTACATAGGCGAGAGTGTGTC
ACAAACGGGTGACTGATCAAGAAATTATTTTGTGCATACGTATCAATACT
CATCGTCAACCCTATCGAGAGACATGGCCTGTCAGTCACTTGCGTGCGGG
TTAGTTGGAGACGAGTAGATTAGCCACCAGTTATTCAACAAAAGCGTTGG
CGGGATGACGGCCGTTACCCCTTTTTTTCGGGCCAAGGGCATGTGTACTT
CAACTGTTGGAAGTGTTCCTCTGTTTACTTCAGATTGTTCAACAAGCTAA
GAACCAGAAACTCAAGAAGAACCGTTTCTCGTACCCTTGTGATCCTCTGG
ACGTCGTATGTATGATGGAATTCGACACATCAAGTATGATTGTATACGAA
CTTGTTAGACAAACAACACACTTCCTGGTGCGTCCACCGTACTCGGACTT
ACCTTCGAAACCGCTCCGACATGTATATGACAGCACAGCAGCTTGATTGT
TTTGCCGGAATTCTGCTCTGATGTACATCTTTTCCCGCTTGAACTCTTAC
CACCACAACAACGAACACCCCAGGCGTCTACTTTCTTCAAGCGAATTCTC
TTCCCCCCGATTTTGACGATTCCCCCGCCTTCCGTGACATGGACCAAGAT
GAGTCCTCGACCGCACCACGACACCAGTACGCACTGGTGCACCGGCGGCC
TTACCGTTGGGCATTTGACATTGTCGTTGGTGTGGAGCTGGTGTTGGCAG
GGCTCAATTCCCGACTGTCAATCGTTGCCTTCTCTCTGCCTTGTCACACC
ATCACCGCTTGGCTTTGCACACACAGTTCACAACCAACTTCAAACCAAAA
GCTGAGCGACTTGCAACTCCCCCCCTGCCCGTCCTGATGACCATCTCCTT
CAAAACTCCGTTTTGTGCGTCATTGATCACACCGCAGGGCATGGACGTGG
CGAATCGGCGATCGTTTTTCTTGGGCATCCGGCGCGTGCTACTCCTGGTC
CAGGTAGTGGAACTCCTAGCGGCATGCATGTGGCAAGCCGCGTTCCCCTT
CGGAGGACTCGCGGGATTCATCACAGCAGCGTCAACGACGAACGGGGAGG
GTGACACACCAAACACTGCTGTATTGGCTACGTTGAGGGATATCTTTGCG
GGCGAAGCGGGAGATGGCAGAGGGCCGTTGGGTCTGGCCTTGGCGGCATG
CTTGGCGCAGTTTTCTGTGTACACGATGCTGCTAGTGTGGTTCGGGTGCG
ATAGGGTTGTGCTGAGGGGTGTGAGGGTCACTGCGTGGGAGCACGGGGCT
GCGGCGGTATGGGCTCTTACAAGGCTCATGACCGGGCCTGGAGGAAAGCT
GACCCACCTGCTCGCGTGTGCGTGGCTGGCGGGAATGGCCTTCTTGTGCG
CATACTTCGGACGGCAGTTGTGAACAACACGCAGTCACGTGTATGTAGAT
GGGGCGGTTCGGATGTGCCTTAATGACGAAGAACATCAATGTAGCGCACG
ATTTGTGGGAAGAGCGCCCGTGTCTAACTTGTCTAGTTTCCGTTGCAGGG
CATAAACAGTCAGCCACGCGGTGAAGGCGACCGCAGTGTGAAACAACGCT
AGGTTGGGGTGATTTGCAGGCTTTTCGCTCCAAGAAAAGAGCTGCTGAAT
CATTTCAACAAACGAATGCCGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:109596..112967+

>mRNA_E-siliculosus-1a_M_contig94.17402.1 ID=mRNA_E-siliculosus-1a_M_contig94.17402.1|Name=mRNA_E-siliculosus-1a_M_contig94.17402.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2136bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:109596..112967+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCATCACCCAACTGCCCACCACTTGACAACTCTGTGTGATTTGACGAC
ACACACCATGCCACCACGTTACGGCAACACCCCCGCCAAGAGGCTTCGAT
TCGTAGGGGCTACTTTGGCCTGCCTTACGCTGATGTCCACTGGAGCCTCA
GTAATCGACGAAACATATTCCCACCAGCATTGCTCCCTGCAACGGCGTTC
GAGAACGCTCCGGTCTGGTGCTCAGGCTTGGTCACGGACGCGGCCCCGAC
AGAGTGCTTGGACGGTTCGTGGAGGGTACAAGCACGGTAGCAGTGCCACC
GCCAGCAGCAGTGGCAGCAACAGCAGCAATAGTGTGGGGCAAGATGGGTT
TCCGCCACGCGGCGAAACCACAGCAGTAGACAGCAACATGGACAAGTTGG
CAGCGGATCTTCGAGCGACGAGGGATCACATCGCCGCTGATATCCATGCT
CGTGGAGAGGCTATTGCAGCAGATCTCAAGGGCAAGCAGGAGAAGATTGT
GGATGAAGTGCTCAGGGAACGCTCACCCGAGGCCTTTGGCGAGCTTGGAG
GACATGCCTCGTCTTACGATTCAGCGACAGCGATGCATCACCCAACTGCC
CACCACTTGACAACTCTGTGTGATTTGACGACACACACCATGCCACCACG
TTACGGCAACACCCCCGCCAAGAGGCTTCGATTCGTAGGGGCTACTTTGG
CCTGCCTTACGCTGATGTCCACTGGAGCCTCAGTAATCGACGAAACATAT
TCCCACCAGCATTGCTCCCTGCAACGGCGTTCGAGAACGCTCCGGTCTGG
TGCTCAGGCTTGGTCACGGACGCGGCCCCGACAGAGTGCTTGGACGGTTC
GTGGAGGGTACAAGCACGGTAGCAGTGCCACCGCCAGCAGCAGTGGCAGC
AACAGCAGCAATAGTGTGGGGCAAGATGGGTTTCCGCCACGCGGCGAAAC
CACAGCAGTAGACAGCAACATGGACAAGTTGGCAGCGGATCTTCGAGCGA
CGAGGGATCACATCGCCGCTGATATCCATGCTCGTGGAGAGGCTATTGCA
GCAGATCTCAAGGGCAAGCAGGAGAAGATTGTGGATGAAGTGCTCAGGGA
ACGCTCACCCGAGGCCTTTGGCGAGCTTGGAGGACATGCCTCGTCTTACG
ATTCAGCGACAGCGGGCATGGACGTGGCGAATCGGCGATCGTTTTTCTTG
GGCATCCGGCGCGTGCTACTCCTGGTCCAGGTAGTGGAACTCCTAGCGGC
ATGCATGTGGCAAGCCGCGTTCCCCTTCGGAGGACTCGCGGGATTCATCA
CAGCAGCGTCAACGACGAACGGGGAGGGTGACACACCAAACACTGCTGTA
TTGGCTACGTTGAGGGATATCTTTGCGGGCGAAGCGGGAGATGGCAGAGG
GCCGTTGGGTCTGGCCTTGGCGGCATGCTTGGCGCAGTTTTCTGTGTACA
CGATGCTGCTAGTGTGGTTCGGGTGCGATAGGGTTGTGCTGAGGGGTGTG
AGGGTCACTGCGTGGGAGCACGGGGCTGCGGCGGTATGGGCTCTTACAAG
GCTCATGACCGGGCCTGGAGGAAAGCTGACCCACCTGCTCGCGTGTGCGT
GGCTGGCGGGAATGGCCTTCTTGTGCGCATACTTCGGACGGCAGTTGTGA
GGCATGGACGTGGCGAATCGGCGATCGTTTTTCTTGGGCATCCGGCGCGT
GCTACTCCTGGTCCAGGTAGTGGAACTCCTAGCGGCATGCATGTGGCAAG
CCGCGTTCCCCTTCGGAGGACTCGCGGGATTCATCACAGCAGCGTCAACG
ACGAACGGGGAGGGTGACACACCAAACACTGCTGTATTGGCTACGTTGAG
GGATATCTTTGCGGGCGAAGCGGGAGATGGCAGAGGGCCGTTGGGTCTGG
CCTTGGCGGCATGCTTGGCGCAGTTTTCTGTGTACACGATGCTGCTAGTG
TGGTTCGGGTGCGATAGGGTTGTGCTGAGGGGTGTGAGGGTCACTGCGTG
GGAGCACGGGGCTGCGGCGGTATGGGCTCTTACAAGGCTCATGACCGGGC
CTGGAGGAAAGCTGACCCACCTGCTCGCGTGTGCGTGGCTGGCGGGAATG
GCCTTCTTGTGCGCATACTTCGGACGGCAGTTGTGA
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