mRNA_E-siliculosus-1a_M_contig94.17459.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17459.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17459.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:611213..611598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size384
Model size387
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936489.5932715-CDS-E-siliculosus-1a_M_contig94:611212..6115961622936489.5932715-CDS-E-siliculosus-1a_M_contig94:611212..611596Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 611213..611596 +
1696251101.5353868-CDS-E-siliculosus-1a_M_contig94:611212..6115961696251101.5353868-CDS-E-siliculosus-1a_M_contig94:611212..611596Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 611213..611596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17459.1prot_E-siliculosus-1a_M_contig94.17459.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 611213..611596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17459.1

>prot_E-siliculosus-1a_M_contig94.17459.1 ID=prot_E-siliculosus-1a_M_contig94.17459.1|Name=mRNA_E-siliculosus-1a_M_contig94.17459.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=128bp
LAVVFISVIILVYVCFVSQKPSRLLVVYDFFHRAGRRQPPHYQIVHTARQ
ARAVAGDITNATDRWDERMPETTNASNRSILLPHAFDLITINGCHRYHAT
RPHKDPLPNSRYPTYKYVPRKSASQPGF
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mRNA from alignment at E-siliculosus-1a_M_contig94:611213..611598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17459.1 ID=mRNA_E-siliculosus-1a_M_contig94.17459.1|Name=mRNA_E-siliculosus-1a_M_contig94.17459.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=386bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:611213..611598+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTGGCTGTGGTCTTCATCTCCGTTATTATTCTAGTGTATGTATGCTTCGT
TTCCCAAAAACCAAGTCGACTTCTTGTGGTTTACGATTTCTTTCACAGAG
CAGGGCGACGTCAGCCACCACACTACCAAATCGTCCATACCGCTCGGCAA
GCGCGCGCGGTGGCAGGAGACATCACCAACGCCACCGACCGCTGGGATGA
ACGAATGCCTGAAACAACGAACGCATCCAACCGTTCTATTCTACTCCCTC
ATGCGTTCGACCTCATAACTATCAACGGATGTCATCGATATCACGCCACT
CGACCACACAAAGACCCCCTGCCGAACTCTAGGTACCCGACCTACAAATA
TGTACCACGAAAGAGTGCAAGCCAGCCCGGTTTTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:611213..611598+

>mRNA_E-siliculosus-1a_M_contig94.17459.1 ID=mRNA_E-siliculosus-1a_M_contig94.17459.1|Name=mRNA_E-siliculosus-1a_M_contig94.17459.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:611213..611598+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTGGCTGTGGTCTTCATCTCCGTTATTATTCTAGTGTATGTATGCTTCGT
TTCCCAAAAACCAAGTCGACTTCTTGTGGTTTACGATTTCTTTCACAGAG
CAGGGCGACGTCAGCCACCACACTACCAAATCGTCCATACCGCTCGGCAA
GCGCGCGCGGTGGCAGGAGACATCACCAACGCCACCGACCGCTGGGATGA
ACGAATGCCTGAAACAACGAACGCATCCAACCGTTCTATTCTACTCCCTC
ATGCGTTCGACCTCATAACTATCAACGGATGTCATCGATATCACGCCACT
CGACCACACAAAGACCCCCTGCCGAACTCTAGGTACCCGACCTACAAATA
TGTACCACGAAAGAGTGCAAGCCAGCCCGGTTTTTTGGCTGTGGTCTTCA
TCTCCGTTATTATTCTAGTGTATGTATGCTTCGTTTCCCAAAAACCAAGT
CGACTTCTTGTGGTTTACGATTTCTTTCACAGAGCAGGGCGACGTCAGCC
ACCACACTACCAAATCGTCCATACCGCTCGGCAAGCGCGCGCGGTGGCAG
GAGACATCACCAACGCCACCGACCGCTGGGATGAACGAATGCCTGAAACA
ACGAACGCATCCAACCGTTCTATTCTACTCCCTCATGCGTTCGACCTCAT
AACTATCAACGGATGTCATCGATATCACGCCACTCGACCACACAAAGACC
CCCTGCCGAACTCTAGGTACCCGACCTACAAATATGTACCACGAAAGAGT
GCAAGCCAGCCCGGTTTT
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