mRNA_E-siliculosus-1a_M_contig94.17457.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17457.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17457.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig94.17457.1 vs. uniprot
Match: A0A6H5L509_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L509_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 4.270e-88
Identity = 144/183 (78.69%), Postives = 156/183 (85.25%), Query Frame = 1 
Query:   61 SATAAKSANDAAFKKLVSDRDGVKNSGVAGGLTSGVAIVDTWTPDACDSGRLIERGPGTRDQRVSHTWHMNSLLLGRAHGGASAPRGEATCPSRADLLDDKQVRRRLGEPPLLLDRQGVTDGGGKEQTGYGMPSENVEAVGRAVCKETLIAAVSKGGVRVVVSNNGAREVGTPDQLLDMLRED 609
            S  AAK+ANDA F+ +V DRDGVK+SGVAGGL SGVAIVDTW PD CDSGRLIERGPG RDQRV+H+ HMNS LL  AHGGAS+P G+AT PSR DLL DKQ RRRLG+PPLLLDRQGVTDGGGKEQTGY MPS+ VEAVGRAVCK TL AAVSKGGVRV+VS NGA  VGTPD LL+M RED
Sbjct:  242 SLAAAKNANDARFRHVVPDRDGVKHSGVAGGLASGVAIVDTWAPDVCDSGRLIERGPGPRDQRVAHSLHMNSFLLVWAHGGASSPLGKATRPSRDDLLGDKQARRRLGKPPLLLDRQGVTDGGGKEQTGYRMPSKRVEAVGRAVCKATLKAAVSKGGVRVMVSTNGAGGVGTPDLLLEMFRED 424
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L509_9PHAE4.270e-8878.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:596682..597295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size612
Model size615
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936489.5535283-CDS-E-siliculosus-1a_M_contig94:596681..5972931622936489.5535283-CDS-E-siliculosus-1a_M_contig94:596681..597293Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 596682..597293 +
1696251101.5256476-CDS-E-siliculosus-1a_M_contig94:596681..5972931696251101.5256476-CDS-E-siliculosus-1a_M_contig94:596681..597293Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 596682..597293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17457.1prot_E-siliculosus-1a_M_contig94.17457.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 596682..597293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17457.1

>prot_E-siliculosus-1a_M_contig94.17457.1 ID=prot_E-siliculosus-1a_M_contig94.17457.1|Name=mRNA_E-siliculosus-1a_M_contig94.17457.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=204bp
VAASAVSRISAPPSKDEAKQSATAAKSANDAAFKKLVSDRDGVKNSGVAG
GLTSGVAIVDTWTPDACDSGRLIERGPGTRDQRVSHTWHMNSLLLGRAHG
GASAPRGEATCPSRADLLDDKQVRRRLGEPPLLLDRQGVTDGGGKEQTGY
GMPSENVEAVGRAVCKETLIAAVSKGGVRVVVSNNGAREVGTPDQLLDML
REDG
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mRNA from alignment at E-siliculosus-1a_M_contig94:596682..597295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17457.1 ID=mRNA_E-siliculosus-1a_M_contig94.17457.1|Name=mRNA_E-siliculosus-1a_M_contig94.17457.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=614bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:596682..597295+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGGCGGCATCGGCTGTGTCACGTATCTCCGCCCCACCCAGCAAGGACGA
GGCGAAGCAGTCGGCAACCGCCGCGAAGAGTGCCAACGACGCTGCATTCA
AGAAACTGGTCTCCGACCGCGACGGCGTCAAGAATAGCGGGGTCGCCGGC
GGCTTGACCTCGGGAGTGGCTATAGTGGATACGTGGACGCCGGACGCTTG
CGACAGCGGCCGTCTGATCGAGCGGGGGCCGGGGACGCGTGACCAGAGGG
TCTCACATACCTGGCACATGAATTCCCTCCTGCTGGGACGGGCTCATGGT
GGAGCGTCTGCCCCGCGGGGAGAAGCGACTTGTCCCAGCCGGGCCGACCT
CTTGGACGACAAGCAAGTCCGCCGGAGGTTGGGCGAGCCCCCGCTGCTTC
TCGATAGGCAGGGGGTAACGGATGGTGGAGGAAAGGAGCAGACGGGATAC
GGTATGCCTAGCGAGAATGTGGAGGCCGTGGGCAGGGCCGTGTGCAAAGA
AACGTTGATCGCGGCGGTCTCAAAGGGTGGGGTGCGGGTGGTGGTGTCCA
ACAACGGGGCGAGGGAAGTTGGAACCCCTGATCAGCTGCTGGACATGTTG
CGCGAGGATGGGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:596682..597295+

>mRNA_E-siliculosus-1a_M_contig94.17457.1 ID=mRNA_E-siliculosus-1a_M_contig94.17457.1|Name=mRNA_E-siliculosus-1a_M_contig94.17457.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1224bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:596682..597295+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTGGCGGCATCGGCTGTGTCACGTATCTCCGCCCCACCCAGCAAGGACGA
GGCGAAGCAGTCGGCAACCGCCGCGAAGAGTGCCAACGACGCTGCATTCA
AGAAACTGGTCTCCGACCGCGACGGCGTCAAGAATAGCGGGGTCGCCGGC
GGCTTGACCTCGGGAGTGGCTATAGTGGATACGTGGACGCCGGACGCTTG
CGACAGCGGCCGTCTGATCGAGCGGGGGCCGGGGACGCGTGACCAGAGGG
TCTCACATACCTGGCACATGAATTCCCTCCTGCTGGGACGGGCTCATGGT
GGAGCGTCTGCCCCGCGGGGAGAAGCGACTTGTCCCAGCCGGGCCGACCT
CTTGGACGACAAGCAAGTCCGCCGGAGGTTGGGCGAGCCCCCGCTGCTTC
TCGATAGGCAGGGGGTAACGGATGGTGGAGGAAAGGAGCAGACGGGATAC
GGTATGCCTAGCGAGAATGTGGAGGCCGTGGGCAGGGCCGTGTGCAAAGA
AACGTTGATCGCGGCGGTCTCAAAGGGTGGGGTGCGGGTGGTGGTGTCCA
ACAACGGGGCGAGGGAAGTTGGAACCCCTGATCAGCTGCTGGACATGTTG
CGCGAGGATGGGGTGGCGGCATCGGCTGTGTCACGTATCTCCGCCCCACC
CAGCAAGGACGAGGCGAAGCAGTCGGCAACCGCCGCGAAGAGTGCCAACG
ACGCTGCATTCAAGAAACTGGTCTCCGACCGCGACGGCGTCAAGAATAGC
GGGGTCGCCGGCGGCTTGACCTCGGGAGTGGCTATAGTGGATACGTGGAC
GCCGGACGCTTGCGACAGCGGCCGTCTGATCGAGCGGGGGCCGGGGACGC
GTGACCAGAGGGTCTCACATACCTGGCACATGAATTCCCTCCTGCTGGGA
CGGGCTCATGGTGGAGCGTCTGCCCCGCGGGGAGAAGCGACTTGTCCCAG
CCGGGCCGACCTCTTGGACGACAAGCAAGTCCGCCGGAGGTTGGGCGAGC
CCCCGCTGCTTCTCGATAGGCAGGGGGTAACGGATGGTGGAGGAAAGGAG
CAGACGGGATACGGTATGCCTAGCGAGAATGTGGAGGCCGTGGGCAGGGC
CGTGTGCAAAGAAACGTTGATCGCGGCGGTCTCAAAGGGTGGGGTGCGGG
TGGTGGTGTCCAACAACGGGGCGAGGGAAGTTGGAACCCCTGATCAGCTG
CTGGACATGTTGCGCGAGGATGGG
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