mRNA_E-siliculosus-1a_M_contig94.17435.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig94.17435.1
Unique NamemRNA_E-siliculosus-1a_M_contig94.17435.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig94contigE-siliculosus-1a_M_contig94:425419..425743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size324
Model size326
Exons1
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936489.4299715-CDS-E-siliculosus-1a_M_contig94:425418..4257421622936489.4299715-CDS-E-siliculosus-1a_M_contig94:425418..425742Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 425419..425742 +
1696251101.4924586-CDS-E-siliculosus-1a_M_contig94:425418..4257421696251101.4924586-CDS-E-siliculosus-1a_M_contig94:425418..425742Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig94 425419..425742 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936489.4495485-UTR-E-siliculosus-1a_M_contig94:425742..4257431622936489.4495485-UTR-E-siliculosus-1a_M_contig94:425742..425743Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 425743..425743 +
1696251101.5051117-UTR-E-siliculosus-1a_M_contig94:425742..4257431696251101.5051117-UTR-E-siliculosus-1a_M_contig94:425742..425743Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig94 425743..425743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig94.17435.1prot_E-siliculosus-1a_M_contig94.17435.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig94 425419..425742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig94.17435.1

>prot_E-siliculosus-1a_M_contig94.17435.1 ID=prot_E-siliculosus-1a_M_contig94.17435.1|Name=mRNA_E-siliculosus-1a_M_contig94.17435.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=108bp
FNSSCRAQVTRVSSSGLRNAKTCNGKEFKVVTALVYTDKSHMCEAAPLQT
RPPLQQNLETVRMADGRGVGAAALDAILPTAVNFLIRKLKRTTAAVLVKH
AHAYHAR*
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mRNA from alignment at E-siliculosus-1a_M_contig94:425419..425743+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17435.1 ID=mRNA_E-siliculosus-1a_M_contig94.17435.1|Name=mRNA_E-siliculosus-1a_M_contig94.17435.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=325bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:425419..425743+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTCAACTCTTCGTGTCGTGCTCAAGTGACTCGTGTCTCAAGCAGTGGCCT
GCGGAATGCCAAAACATGTAACGGCAAAGAGTTCAAAGTCGTCACAGCAC
TCGTCTACACAGACAAATCGCACATGTGCGAGGCAGCACCACTCCAAACC
AGGCCGCCGCTTCAACAAAACTTGGAAACCGTACGGATGGCGGATGGCAG
GGGCGTGGGGGCTGCAGCTCTGGATGCGATCTTGCCAACAGCAGTCAATT
TCTTGATACGAAAATTGAAGCGCACTACTGCGGCTGTGCTTGTGAAACAT
GCACATGCATACCATGCGAGATAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:425419..425743+

>mRNA_E-siliculosus-1a_M_contig94.17435.1 ID=mRNA_E-siliculosus-1a_M_contig94.17435.1|Name=mRNA_E-siliculosus-1a_M_contig94.17435.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=648bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:425419..425743+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTCAACTCTTCGTGTCGTGCTCAAGTGACTCGTGTCTCAAGCAGTGGCCT
GCGGAATGCCAAAACATGTAACGGCAAAGAGTTCAAAGTCGTCACAGCAC
TCGTCTACACAGACAAATCGCACATGTGCGAGGCAGCACCACTCCAAACC
AGGCCGCCGCTTCAACAAAACTTGGAAACCGTACGGATGGCGGATGGCAG
GGGCGTGGGGGCTGCAGCTCTGGATGCGATCTTGCCAACAGCAGTCAATT
TCTTGATACGAAAATTGAAGCGCACTACTGCGGCTGTGCTTGTGAAACAT
GCACATGCATACCATGCGAGATAATTCAACTCTTCGTGTCGTGCTCAAGT
GACTCGTGTCTCAAGCAGTGGCCTGCGGAATGCCAAAACATGTAACGGCA
AAGAGTTCAAAGTCGTCACAGCACTCGTCTACACAGACAAATCGCACATG
TGCGAGGCAGCACCACTCCAAACCAGGCCGCCGCTTCAACAAAACTTGGA
AACCGTACGGATGGCGGATGGCAGGGGCGTGGGGGCTGCAGCTCTGGATG
CGATCTTGCCAACAGCAGTCAATTTCTTGATACGAAAATTGAAGCGCACT
ACTGCGGCTGTGCTTGTGAAACATGCACATGCATACCATGCGAGATAA
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