prot_E-siliculosus-1a_M_contig93.17363.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig93.17363.1
Unique Name	prot_E-siliculosus-1a_M_contig93.17363.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	156

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot
Match: D8LST5_ECTSI (DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST5_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 2.640e-92
Identity = 148/156 (94.87%), Postives = 153/156 (98.08%), Query Frame = 0

Query:    1 MRCSLLLALAFRAQFGQGFVGPTGGLVLSNCVSVAARSNNNIVRRGVASTSLKAAASDKGSDASVNLRKPAVVEAIAERSNLSKNQAEAALAAFTDVVMQGVADGNKITLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKSFKDMVR 156
            M+CSLLLALAFRAQ GQGFVGPTGGLVLSNCVSVAARSNNNIVRRGVASTSLKAAASD+GSDASVNLRKPAVVEAIAERSNL KNQAEAALAAFTDVVMQ VADGNKI+LQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASK+FKDMV+
Sbjct:    1 MKCSLLLALAFRAQSGQGFVGPTGGLVLSNCVSVAARSNNNIVRRGVASTSLKAAASDEGSDASVNLRKPAVVEAIAERSNLDKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKDMVK 156

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BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot
Match: A0A835Z9S8_9STRA (DNA-binding protein HU n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.900e-24
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 0

Query:   67 LRKPAVVEAIAERSNLSKNQAEAALAAFTDVVMQGVADGNKITLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKSFKDMVR 156
            ++K   V +I+ +S LSK Q +AA++AF D VM+ VADG K++L GFGTFE R R  R GRNP+TGE L I A+ APAFSA+K+FKD V+
Sbjct:    1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVK 90

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BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot
Match: K9RYJ2_SYNP3 (Bacterial nucleoid DNA-binding protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RYJ2_SYNP3)

HSP 1 Score: 97.4 bits (241), Expect = 1.830e-23
Identity = 48/89 (53.93%), Postives = 67/89 (75.28%), Query Frame = 0

Query:   67 LRKPAVVEAIAERSNLSKNQAEAALAAFTDVVMQGVADGNKITLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKSFKDMV 155
            + K  +V+A+A+++N++K QAE  ++A  DV+M  VADG+K+TL GFG FE R RK R GRNP+TGE+++I AT  PAFSA K FK+ V
Sbjct:    1 MNKAELVDAVADKANVTKKQAEVVISAAVDVIMDAVADGDKVTLVGFGAFEPRERKAREGRNPKTGEKMEIPATKVPAFSAGKLFKEKV 89

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BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot
Match: A0A6M8B627_9CYAN (HU family DNA-binding protein n=11 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M8B627_9CYAN)

HSP 1 Score: 96.3 bits (238), Expect = 3.710e-23
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 0

Query:   67 LRKPAVVEAIAERSNLSKNQAEAALAAFTDVVMQGVADGNKITLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKSFKDMV 155
            + K  +V+A+AE++N++K QA+A L+A  D +M+ V+ G K+TL GFG+FE R RK R GRNP+TGE +KI AT  PAFSA K FKD+V
Sbjct:    1 MNKGELVDAVAEKANVTKKQADAVLSAAIDSIMEAVSKGEKVTLVGFGSFEPRERKEREGRNPKTGEAMKIPATKVPAFSAGKLFKDLV 89

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BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot
Match: UPI001A01FA4A (HU family DNA-binding protein n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI001A01FA4A)

HSP 1 Score: 96.3 bits (238), Expect = 4.650e-23
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 0

Query:   67 LRKPAVVEAIAERSNLSKNQAEAALAAFTDVVMQGVADGNKITLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKSFKDMV 155
            + K  +V+AIA ++ ++K +A+A L+A  DVVM+ VA  +K+TL GFGTFE R R+ R GRNP TG+ +KI ATT PAFSA K FK+MV
Sbjct:    1 MNKAELVDAIAAKAEVTKKEADAVLSAMIDVVMESVASNDKVTLVGFGTFEARQRQAREGRNPSTGQPIKIPATTVPAFSAGKGFKEMV 89

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BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot
Match: UPI001D0D3D50 (HU family DNA-binding protein n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI001D0D3D50)

HSP 1 Score: 95.9 bits (237), Expect = 9.470e-23
Identity = 48/91 (52.75%), Postives = 69/91 (75.82%), Query Frame = 0

Query:   65 VNLRKPAVVEAIAERSNLSKNQAEAALAAFTDVVMQGVADGNKITLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKSFKDMV 155
            +++ K  +++A+AER+N++K +A+A ++A  DV++Q VA   K+TL GFG+FE R RK R GRNP+T E++ I ATT PAFSA KSFKD V
Sbjct:   17 IHMNKGELIDAVAERANVTKKEADAVISATLDVIVQTVASEEKVTLVGFGSFEPRKRKEREGRNPKTNEKMTIPATTVPAFSAGKSFKDAV 107

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BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot
Match: A0A7S1Y344_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y344_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.080e-22
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = 0

Query:   67 LRKPAVVEAIAERSNLSKNQAEAALAAFTDVVMQGVADGNKITLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKSFKD 153
            +RKPA+VE +AER   SK+++  A+ A  D +M+ VADG K+ LQGFGTF+   RK RTGRNP+TGE L+IKA+  P+FSA+K FK+
Sbjct:   66 VRKPALVEMVAERMGTSKSESTQAIEAVVDTIMEVVADGKKLNLQGFGTFKLSERKARTGRNPKTGESLEIKASKTPSFSAAKGFKE 152

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BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot
Match: A0A8J6R600_9CYAN (HU family DNA-binding protein n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6R600_9CYAN)

HSP 1 Score: 94.7 bits (234), Expect = 1.490e-22
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 0

Query:   67 LRKPAVVEAIAERSNLSKNQAEAALAAFTDVVMQGVADGNKITLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKSFKDMV 155
            + K  +V+A+AE++N++K QAEAAL A  DV+   VA G+K+TL GFG+FE R R+ R GRNP+TGE + I AT  PAFSA K FKD V
Sbjct:    1 MNKGELVDAVAEKANVTKKQAEAALTAVFDVIQATVAAGDKVTLVGFGSFEARERQAREGRNPKTGEAMTIPATKVPAFSAGKLFKDKV 89

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BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot
Match: UPI001684A996 (HU family DNA-binding protein n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI001684A996)

HSP 1 Score: 94.7 bits (234), Expect = 1.490e-22
Identity = 46/89 (51.69%), Postives = 68/89 (76.40%), Query Frame = 0

Query:   67 LRKPAVVEAIAERSNLSKNQAEAALAAFTDVVMQGVADGNKITLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKSFKDMV 155
            + K  +++ +AE++N++K +A+A ++AFT+ V++ VA+G K+TL GFGTFE RAR  R GRNP+TGE +KI A+T P FSA K FK+ V
Sbjct:    1 MNKAELIDKVAEKANVTKKEADALISAFTESVVEAVAEGQKVTLVGFGTFEPRARAEREGRNPKTGEAMKIPASTVPVFSAGKLFKEKV 89

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BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot
Match: U5DQY8_9CHRO (Bacterial nucleoid DNA-binding protein n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DQY8_9CHRO)

HSP 1 Score: 94.0 bits (232), Expect = 2.990e-22
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 0

Query:   67 LRKPAVVEAIAERSNLSKNQAEAALAAFTDVVMQGVADGNKITLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKSFKDMV 155
            + K  +++ IAE++ ++K QA+A L A  D +M+ V+DG K+TL GFG+FE R RK R GRNP+TG++++I AT  PAFSA KSFK+ V
Sbjct:    1 MNKGDLIDQIAEKTTVTKKQADAVLTAALDTIMEAVSDGEKVTLVGFGSFESRERKAREGRNPKTGDKMEIPATRVPAFSAGKSFKEKV 89

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig93.17363.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LST5_ECTSI	2.640e-92	94.87	DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=28...	[more]
A0A835Z9S8_9STRA	6.900e-24	56.67	DNA-binding protein HU n=1 Tax=Tribonema minus Tax...	[more]
K9RYJ2_SYNP3	1.830e-23	53.93	Bacterial nucleoid DNA-binding protein n=1 Tax=Syn...	[more]
A0A6M8B627_9CYAN	3.710e-23	55.06	HU family DNA-binding protein n=11 Tax=Cyanobacter...	[more]
UPI001A01FA4A	4.650e-23	55.06	HU family DNA-binding protein n=1 Tax=filamentous ...	[more]
UPI001D0D3D50	9.470e-23	52.75	HU family DNA-binding protein n=1 Tax=Synechococcu...	[more]
A0A7S1Y344_9STRA	1.080e-22	56.32	Hypothetical protein n=1 Tax=Grammatophora oceanic...	[more]
A0A8J6R600_9CYAN	1.490e-22	56.18	HU family DNA-binding protein n=3 Tax=unclassified...	[more]
UPI001684A996	1.490e-22	51.69	HU family DNA-binding protein n=1 Tax=Pseudanabaen...	[more]
U5DQY8_9CHRO	2.990e-22	51.69	Bacterial nucleoid DNA-binding protein n=1 Tax=Rub...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000119	Histone-like DNA-binding protein	PRINTS	PR01727	DNABINDINGHU	coord: 140..154 score: 32.66 coord: 106..121 score: 45.93 coord: 124..137 score: 64.29
IPR000119	Histone-like DNA-binding protein	SMART	SM00411	bhlneu	coord: 67..156 e-value: 3.2E-27 score: 106.4
IPR000119	Histone-like DNA-binding protein	PFAM	PF00216	Bac_DNA_binding	coord: 68..155 e-value: 2.2E-27 score: 95.1
IPR000119	Histone-like DNA-binding protein	PANTHER	PTHR33175	FAMILY NOT NAMED	coord: 54..155
IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	GENE3D	4.10.520.10		coord: 67..156 e-value: 4.2E-29 score: 102.7
IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	SUPERFAMILY	47729	IHF-like DNA-binding proteins	coord: 68..156
None	No IPR available	PANTHER	PTHR33175:SF3	DNA-BINDING PROTEIN HU-BETA	coord: 54..155
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..29
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..29
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 30..156
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..18 score: 0.69
IPR020816	Histone-like DNA-binding protein, conserved site	PROSITE	PS00045	HISTONE_LIKE	coord: 112..131

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig93	contig	E-siliculosus-1a_M_contig93:428725..433446 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig93.17363.1	mRNA_E-siliculosus-1a_M_contig93.17363.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig93 428725..433446 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig93.17363.1 ID=prot_E-siliculosus-1a_M_contig93.17363.1|Name=mRNA_E-siliculosus-1a_M_contig93.17363.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=156bp
MRCSLLLALAFRAQFGQGFVGPTGGLVLSNCVSVAARSNNNIVRRGVAST
SLKAAASDKGSDASVNLRKPAVVEAIAERSNLSKNQAEAALAAFTDVVMQ
GVADGNKITLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKS
FKDMVR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR020816	Histone-like_DNA-bd_CS
IPR010992	IHF-like_DNA-bd_dom_sf
IPR000119	Hist_DNA-bd