mRNA_E-siliculosus-1a_M_contig93.17334.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17334.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17334.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17334.1 vs. uniprot
Match: D7G8Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 6.790e-24
Identity = 58/81 (71.60%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    1 MSGQASPTAEDMPGSELQENSGGPYIWVHETSRQSTLRTSVAGVRPGLAVFQPVHSMSRDETTDVHGVSTRPCIQVRRPLP 243
            MSGQASPTAEDMPGSELQENSG     V ETSRQ TL  SV GVRPGL VFQPVHS+SRDETTD HG    P I  + P P
Sbjct:    1 MSGQASPTAEDMPGSELQENSG-----VRETSRQCTLHPSVTGVRPGLGVFQPVHSISRDETTDAHGGIYLPPIPPKAPAP 76
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Z8_ECTSI6.790e-2471.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:63882..66390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size435
Model size1224
Exons2
Ec32 orthologEc-15_002470.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17334.1prot_E-siliculosus-1a_M_contig93.17334.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 63882..65601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936474.5358324-CDS-E-siliculosus-1a_M_contig93:63881..639621622936474.5358324-CDS-E-siliculosus-1a_M_contig93:63881..63962Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 63882..63962 +
1696251095.162667-CDS-E-siliculosus-1a_M_contig93:63881..639621696251095.162667-CDS-E-siliculosus-1a_M_contig93:63881..63962Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 63882..63962 +
1622936474.5545027-CDS-E-siliculosus-1a_M_contig93:65247..656011622936474.5545027-CDS-E-siliculosus-1a_M_contig93:65247..65601Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 65248..65601 +
1696251095.1732776-CDS-E-siliculosus-1a_M_contig93:65247..656011696251095.1732776-CDS-E-siliculosus-1a_M_contig93:65247..65601Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 65248..65601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936474.5744207-UTR-E-siliculosus-1a_M_contig93:65601..663901622936474.5744207-UTR-E-siliculosus-1a_M_contig93:65601..66390Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 65602..66390 +
1696251095.1876192-UTR-E-siliculosus-1a_M_contig93:65601..663901696251095.1876192-UTR-E-siliculosus-1a_M_contig93:65601..66390Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 65602..66390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17334.1

>prot_E-siliculosus-1a_M_contig93.17334.1 ID=prot_E-siliculosus-1a_M_contig93.17334.1|Name=mRNA_E-siliculosus-1a_M_contig93.17334.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=145bp
MSGQASPTAEDMPGSELQENSGGPYIWVHETSRQSTLRTSVAGVRPGLAV
FQPVHSMSRDETTDVHGVSTRPCIQVRRPLPSWPCSLKRPHSSFRRRGRN
IDCPFSRMITAGSTGTHEVGRSGCSIGKEFRGLEVFMYQAVDFP*
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mRNA from alignment at E-siliculosus-1a_M_contig93:63882..66390+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17334.1 ID=mRNA_E-siliculosus-1a_M_contig93.17334.1|Name=mRNA_E-siliculosus-1a_M_contig93.17334.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2509bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:63882..66390+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGTGGCCAGGCTTCTCCGACTGCGGAAGACATGCCAGGAAGCGAGCT
GCAGGAGAACTCAGGTGGGCCGTACATCTGGGTCTGTTGAAGGCGTTGGC
GGCTTTCGCGTTGAGATCGGCTTCCTCGCGCGCGCGCTCTCTCTCTCTCG
AACTCTGAACTACCCACATTTTTTGCCCTCTCTTGCCCGTTCAATGAAAG
AACTGGGCTACATGATGGCAGCCATCTATGCATAGTTGTAGGCGGTGAGG
CGCGCGCCACTTGCCATGCGGTCGTGAAGTATTTTCATGTTGAATTCTGC
GTGCGTTTCAGCTGCCCCTCCAGACCCACATTGTCTCTTCCTCAAAAACC
CGTCGGTGGTCTTTCTTTCGGATCCTGATGGCGCCTTCGGCGTCTCCTTG
AAAGCCACCACCCTCCTACGCATACCAACCTGTTGATCCGACTCCCCTCT
TGGTGTACCATGAATGCCTCATAGTGGTGTTTTGTACGCATACACAGCCA
GGTTTCGAACAATTGGGACGTTCAGTGCCCCATGGTTTCCTTTGGTAGCA
AGAGACCCACAGCGGCCCACTCGTCGGAACAATGGGGCAACAACCAGCAT
CCTTGGATCGAGGAACTACAGCAGACTTTAGACCCAGACAGCTCCGGCAA
CAACGACTGTACACGTCCCTCTCTCTGCCATTTTTACATCGAACATCGAA
CATCGAACCAATTCCATGCGCAAGTCAGGGCGAATGGCTCGGTCGCCTTT
CGCGCGCTCGTCTTGTGCGGTGCGCGCGTCGGCTTCCGAAAGCACCAGTG
CCGTTCGCTCGTTACGTCCGTGGTATAGCAAACCCCCGGCCTTGGCGACC
TTAGGAGGGGGTCTCGTTCTGAGCCCCCCCCGCTAGTCTCGGCTATCTTC
GCTCGGCGAGAGTGGGCGCGGCACGTCAACATTATGTTGTTTTTCTCGTG
AGCCGCCGCCCTAGATCTTTGAGCAGACATTTTTGATATTCAGTTGAAAG
TTGCGTGTTGTTTGCACACAGAAGCGTTTTCTCCCTCTTGTCTACTGCTT
GTACACACCGTGCTAGTCACCGAAATCCTGCACCCAAGCCATTGAATTGG
TTTTGGTTGTGCTGAAACCGCCAACCACTCATGTGTGACCAATCGCCGTG
TGGTTCGTTGCAACGACAACGCACACCGCAGCAGGGTTACTCAACTTCAA
CGAAGTAGTACGACGGCGACACGCTACAGTATCAAAGACGGGAGCCAGCG
GGCAGCACGCAAACAGTCTTCCTCTTCGCTTCGTCTTGTGCTCCAAATGC
GCTGTTGCCGCCCTGTATTGAAGAGAACCTTCCCGCCTACATGCTTACTG
CTGTTGTCTTGTTCAGGTGCACGAGACCTCACGCCAAAGCACGCTGCGTA
CGAGTGTTGCCGGCGTTCGGCCCGGGCTAGCCGTGTTTCAACCTGTGCAC
AGCATGTCGCGGGACGAGACCACCGACGTGCACGGGGTATCTACCCGCCC
TTGCATCCAAGTACGGCGCCCCCTCCCCTCGTGGCCATGCAGCCTGAAGC
GACCCCACAGCTCTTTTAGACGGAGAGGTCGAAACATCGACTGTCCCTTC
TCCCGTATGATAACAGCAGGAAGCACTGGAACTCACGAAGTTGGTCGTTC
TGGCTGTTCCATAGGAAAAGAGTTTCGTGGGCTTGAGGTTTTCATGTACC
AGGCAGTTGATTTCCCCTGAACGAGTTCGTATTTGTATTGGTGCAAAATT
CGACGCCTGTGCAATCAATCAAGCTTTCGGCGTCAGGATTCACGTGAGAA
CAGACCTTTTCTGTGTTTTTCAATCGAGACACTCGGCAGGCACTATTCTG
CTCTGGTATCGGCCCCCTGTGTCGTTCTTGGCTTCCTATGGGTTGTGCGT
GGAGAGTCGAGTTTTACCTGAAGGTTTTGGGGTACTGTCGAAGAGTATGT
GGTTTGGCTCACAAGGCACAGTAGAAAGCTCAAGACGTTTTGGCTCTCTT
GATAATGTCTCTAGCCTTTTCTTGAGGGTTTAGGGCGTCGCACGTCGCCA
CCAGTGATTCGTTAGATTCACAACCGGTCCCGTTGCGAGATGACGCGCGT
TGGTAGACAGGTGCGGTACTTTTCTCAGCCCACTCGTGGATGAATCAGAA
AGGAAGAGCCTCCCAGTCTATGTCTTTACGCTTTGGTACGGGTGGCAAAG
GATGCACCTTGGTTGAGGCTTTCAAGGGGCAGTTGCCGAGTGACAGCCTC
TGTTGGGACTTGGCCTTCAGCGATGTGATACGAAGGAACGGGCTTAGAAG
AACTGATGACTGAAGGGCTTCGGGGTGTTGGTAGCTGCGGCGCTTCGGCG
ATGAAAAAAGGTTACATCAACTACATTGAGTGGTTTGTACCGTATTTTTG
TTTTGTTTCCCCGCGGCGTCGTATGTGCTGGGTGTTTGCGACCACGGGCT
CCCCATTTTTGTGGACTGAAAAGCAAATGTGAGAAGCAACAACAACTTGT
GCTGTCGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:63882..66390+

>mRNA_E-siliculosus-1a_M_contig93.17334.1 ID=mRNA_E-siliculosus-1a_M_contig93.17334.1|Name=mRNA_E-siliculosus-1a_M_contig93.17334.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=870bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:63882..66390+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGTGGCCAGGCTTCTCCGACTGCGGAAGACATGCCAGGAAGCGAGCT
GCAGGAGAACTCAGGTGGGCCGTACATCTGGATGAGTGGCCAGGCTTCTC
CGACTGCGGAAGACATGCCAGGAAGCGAGCTGCAGGAGAACTCAGGTGGG
CCGTACATCTGGGTGCACGAGACCTCACGCCAAAGCACGCTGCGTACGAG
TGTTGCCGGCGTTCGGCCCGGGCTAGCCGTGTTTCAACCTGTGCACAGCA
TGTCGCGGGACGAGACCACCGACGTGCACGGGGTATCTACCCGCCCTTGC
ATCCAAGTACGGCGCCCCCTCCCCTCGTGGCCATGCAGCCTGAAGCGACC
CCACAGCTCTTTTAGACGGAGAGGTCGAAACATCGACTGTCCCTTCTCCC
GTATGATAACAGCAGGAAGCACTGGAACTCACGAAGTTGGTCGTTCTGGC
TGTTCCATAGGAAAAGAGTTTCGTGGGCTTGAGGTTTTCATGTACCAGGC
AGTTGATTTCCCCTGAGTGCACGAGACCTCACGCCAAAGCACGCTGCGTA
CGAGTGTTGCCGGCGTTCGGCCCGGGCTAGCCGTGTTTCAACCTGTGCAC
AGCATGTCGCGGGACGAGACCACCGACGTGCACGGGGTATCTACCCGCCC
TTGCATCCAAGTACGGCGCCCCCTCCCCTCGTGGCCATGCAGCCTGAAGC
GACCCCACAGCTCTTTTAGACGGAGAGGTCGAAACATCGACTGTCCCTTC
TCCCGTATGATAACAGCAGGAAGCACTGGAACTCACGAAGTTGGTCGTTC
TGGCTGTTCCATAGGAAAAGAGTTTCGTGGGCTTGAGGTTTTCATGTACC
AGGCAGTTGATTTCCCCTGA
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