mRNA_E-siliculosus-1a_M_contig93.17324.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17324.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17324.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17324.1 vs. uniprot
Match: D7G907_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G907_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 1.640e-89
Identity = 187/191 (97.91%), Postives = 188/191 (98.43%), Query Frame = 1 
Query:    1 MRISLLQLCLGFLAVCLVLGEQVEEAPSSNLFKKFFTKTKNGLGKVRKSLAVKKDKAVDEEDPLGEGVEAVLDAIDEFVAEGEKNTGKAAEDVKKVVDETKESVKSAISASKDKLNEAGADIKSTVDAAVEGAAADMEAVRGSLQDGIKNVGDQVTEAARXXXXXXXXXXXXXXXXXXXXXXXASTAAGEL 573
            MRISLLQLC GFLAVCLVLGEQVEEAPSSNLFKKFFTKTKNGLGKVRKSLAVKKDKAVDEEDPLGEGVEAVLDAIDEFVAEGEKNTGKAAEDVKKVVDETKESVKSAISASKDKLNEAGADIKSTVDAAVEGAAADM+AVRGSLQDGIKNVGDQV EAA XXXXXXXXXXXXXXXXXXXXXXXASTAAGEL
Sbjct:    1 MRISLLQLCFGFLAVCLVLGEQVEEAPSSNLFKKFFTKTKNGLGKVRKSLAVKKDKAVDEEDPLGEGVEAVLDAIDEFVAEGEKNTGKAAEDVKKVVDETKESVKSAISASKDKLNEAGADIKSTVDAAVEGAAADMDAVRGSLQDGIKNVGDQVAEAAXXXXXXXXXXXXXXXXXXXXXXXXASTAAGEL 191
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17324.1 vs. uniprot
Match: A0A6H5JLA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA8_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.400e-8
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 2 
Query: 1637 GTVEDPWTTGDVIHGGFEDSTLGDLGKIAS 1726
            GT+EDPW +GDVIHGGFEDSTLGDLGKI S
Sbjct:   23 GTIEDPWMSGDVIHGGFEDSTLGDLGKIKS 52
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G907_ECTSI1.640e-8997.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JLA8_9PHAE1.400e-886.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:11297..14773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size576
Model size1726
Exons3
Ec32 orthologEc-15_002380.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17324.1prot_E-siliculosus-1a_M_contig93.17324.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 12447..14773 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936472.0873532-UTR-E-siliculosus-1a_M_contig93:11296..124461622936472.0873532-UTR-E-siliculosus-1a_M_contig93:11296..12446Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 11297..12446 -
1696251094.1928427-UTR-E-siliculosus-1a_M_contig93:11296..124461696251094.1928427-UTR-E-siliculosus-1a_M_contig93:11296..12446Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 11297..12446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936472.1433477-CDS-E-siliculosus-1a_M_contig93:12446..128391622936472.1433477-CDS-E-siliculosus-1a_M_contig93:12446..12839Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 12447..12839 -
1696251094.2150571-CDS-E-siliculosus-1a_M_contig93:12446..128391696251094.2150571-CDS-E-siliculosus-1a_M_contig93:12446..12839Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 12447..12839 -
1622936472.1573324-CDS-E-siliculosus-1a_M_contig93:13445..135421622936472.1573324-CDS-E-siliculosus-1a_M_contig93:13445..13542Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 13446..13542 -
1696251094.2303414-CDS-E-siliculosus-1a_M_contig93:13445..135421696251094.2303414-CDS-E-siliculosus-1a_M_contig93:13445..13542Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 13446..13542 -
1622936472.1832962-CDS-E-siliculosus-1a_M_contig93:14687..147731622936472.1832962-CDS-E-siliculosus-1a_M_contig93:14687..14773Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 14688..14773 -
1696251094.2409973-CDS-E-siliculosus-1a_M_contig93:14687..147731696251094.2409973-CDS-E-siliculosus-1a_M_contig93:14687..14773Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 14688..14773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17324.1

>prot_E-siliculosus-1a_M_contig93.17324.1 ID=prot_E-siliculosus-1a_M_contig93.17324.1|Name=mRNA_E-siliculosus-1a_M_contig93.17324.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=192bp
MRISLLQLCLGFLAVCLVLGEQVEEAPSSNLFKKFFTKTKNGLGKVRKSL
AVKKDKAVDEEDPLGEGVEAVLDAIDEFVAEGEKNTGKAAEDVKKVVDET
KESVKSAISASKDKLNEAGADIKSTVDAAVEGAAADMEAVRGSLQDGIKN
VGDQVTEAAREAAESAAAASKQAQEDAEETAEKASTAAGEL*
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mRNA from alignment at E-siliculosus-1a_M_contig93:11297..14773-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17324.1 ID=mRNA_E-siliculosus-1a_M_contig93.17324.1|Name=mRNA_E-siliculosus-1a_M_contig93.17324.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3477bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:11297..14773- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGGATCTCTTTGCTTCAACTCTGCCTCGGCTTCCTTGCTGTATGTTT
GGTGTTGGGCGAGCAAGTTGAGGAGGCACCGTCCAGGTGTGTGTTGGTTG
GAACGATGTCACGACGGCGTATGATTTTAGAAGCAGCACTCAACTGCATG
CGATTTACGTACATACAGCAGTAGTTCTGAACGACCTGACGGTCAAAACG
GGTCGTTGCAGTACTCCGAACCCGTCGACAACGCAACCGCGCACGCGCGT
GTGTTGAACCACATCTATCTCTACCCTGAACGCGATAGCCTGTCATACTG
TAGTGTTTCTTCACCACCTCCAACAAGTGTCGCGATGGTTTCTGCAGCTC
CGGTAGTTTTTCATGTTTTATGTGTGGTAAGAGGATATGAATGTGGACAT
GTGTGTGTGTCTTGCGTAGCGCAACCGTAACCGCACAATTGGTCCTGTAT
TGTGGTGTTAATGTGCACGTCTAGCGTCGAGTGTTGCTTCCACGAACATG
AGTAGAGTTGTGTTGCTCCTCCCATCATGATGCTCATCTTGTTGTTTTGG
AAGAAAAGCACACGCGACTGCGTGTGATGGGCGATGGACGCACACATCGG
CTGTGTAGTTTAGTGTCTGTTTTGGGTCGGGGAAACATTTCATTACCTGT
GTCAATCAAGCGCCGAGCCCATTTTTCTGCTCTTGCGACATGAAAACCGC
AACACGACTTGCAGGTCACACAATTATGTGCGTGTTTGTTTTGGTCCCAT
CTATAGAACCACAGGTATTTTTTTCTAACTTACCTCCGGCGGTGCTGCCT
TCAGTGTTTACGGCGAGCAGAGTTTCAGCACTCTCTCCTACGGAGTACTA
TTTCACGCTTCTGTTGTAAATAGATCGCGAGGTAATCCTTCCGGAGACTT
TCGAACCACAACCTACAGCAGTAGCATCATGAGCTGCAAGGTTACCAAGT
GAACCACCGGGACGATGGATGTTGCTATCAAGCGTCGCAACGGCTACAAT
GATTAAAACCTCCCTGCTTGGTGTTGAGTGGTTGAGTTCCGCTTGCCGAG
CCTTCAAGCGATGGAAATTCCTGAAAGAGCCGCAGCAGCATGTATTTGAT
TCTGTTGTGAAATAAATACACCCTCGAGGTATCTCGCGGTCTTTCCGAGC
TGGACGTGGATGCTTACCTCTTTGTGTCTGCGTGTGGGTCGGTGGCGTCG
TATCTCCTTCCTCTCCTGCGTTGTATGACAGCAATTTGTTCAAGAAGTTC
TTCACCAAGACAAAGAATGGCCTCGGCAAAGTGCGGAAGTCGCTTGCTGT
TAAGAAGGACAAGGCGGTAGACGAGGAGGTGAGACTGTTTCTTGTGTGGT
ATGCCAAACGTGTCACAATTCAATTTCTCGACAAGAGCACAAAACTCGCA
TCATGCTCGTTTTCGCATCACCGTAGTAGGAGAGGGCATGCCCACATGCC
AAGCGCAGGAGTTGGAGAACGTGACAATACATCAAAGGGAGGGGGCTATC
CCGAAAAGTAAAATAGAAAATAGATGCATATGAAATGGTCGAGTTTGATA
CTCAAGGCATGAGCGTAAACCTATCACCATACTGTAAGACCGAACGGTTG
GTGCAGAGAATGATGAATGCACGGGGGGTAGATGAGCCAGACTCAGCGAC
GTGGATTGTACAAGCGTAAAGATCGCCCGACTGTTGATGGTACTGCTGTA
CCTCAATTCGGAATTGGATGCTTGGGACCGCAGTCGTGAAATAGAGCGTG
GGTGGTGGTCAGATTGGAACACATGTACTTCCTGAAATGTTTTTTTTTGC
CCGGTTTCCCCAATAATCTACTTCGTTAATCATTTTTTGGGGCCCGTTGG
ATCAGCGATCGATAGCATGTGGAAGTTTACCGGTACTCCACGACCCCCGC
TCTGTTTCGCCACGCCCCTATTACGCTTCTTAAGGACCCGCTAGGAGAAG
GGGTTGAGGCAGTGCTAGACGCCATCGACGAATTCGTGGCCGAGGGGGAG
AAAAACACCGGAAAAGCAGCGGAGGACGTAAAAAAAGTTGTCGACGAGAC
TAAGGAATCGGTGAAGAGTGCTATTTCAGCCTCCAAGGACAAGTTAAACG
AAGCGGGTGCCGACATCAAGTCGACGGTAGACGCAGCTGTCGAGGGTGCA
GCAGCGGATATGGAGGCGGTCAGAGGGTCTCTTCAGGACGGCATCAAGAA
TGTCGGAGATCAAGTCACCGAAGCCGCTAGGGAGGCCGCGGAATCTGCTG
CGGCAGCGTCTAAACAGGCGCAAGAGGACGCTGAAGAGACCGCCGAGAAG
GCGTCCACGGCTGCGGGAGAGTTGTGATTTGATGGGAGAGCCGTGGACTC
CCGTCCTTGTCAATGGAACCTGAGCTATTCGAAGAATAGCAAGGACTGTT
GGTGACGTTGCAATATCAGGCGTTAGTGTGAGGAGTGCATTACGAAGAAT
TCGGTACTGCACCTCTTGTTGTCAGATGTTGTGCGTGATAAGTCCGGTTT
GGTGACGTCCGTTCAAGCACTTCTTGTGCGTTTGGCTTCCTGGCGTTGCA
GTCGTGATAGTGACTGCTAGTAGGGCAACAATCTGTGACCGTTGCTCTTT
CTCGCCGTGCTTCTCTTGCTGTTCAAAGTATTAGTTGTTTTATGCATATT
TTGGGTTTGGTTGAAAGTGCCGCTGACTACTTGTAGAAGACCCAGACATG
CTTGACTTGGAATTTTGAATTTTGTAATGTTAAAAAAGTACGTGCGATTG
GGGTGGTTTATAGGGAGATTAAGATGTGCCCCTCTATTTGGACGTTGCAC
TCAATTTTTTGTCTGTCGAGCGTCCGCCGCCAGGTTTTTGTGGGCGCTGT
CTGATGTTTATGTCTGGTACGGTTTATATCCCTTGTGTATGGAATCGGTT
GGCCTTAGTAGAGCAGGAGTGCCATACCGTTGTTTGAAAGTAGAATATCA
GGACGAATTCAACGTCCCTTTTGCTTTTCGCACATTGTGCCAATCCATCA
TGTCACGAGGGCTGCTTCTGCATAATGGCGCCAGTCCTTGCGGCCGTAGT
GTACTCCCCAAGACCACGACGATGATGTTTGTCATTGCAGCTTTCATTGT
CGGATTACTTAGTCAAGCAACGGTATGTGCAAGAGTTTACAAAGCATCAT
CCGCGAGTATGCACGGATGCACAGGAACGCGTACAAAAAGAATCGTGATT
TAGATAATACGACAACGAAGCGTTGCCATTCGAAGCTCGTCCCCGATATT
CGCACGTGGGCGGGGGGATTTGGAGTGGTTGCGAGAATGAAAACAAATCA
CTTGTAGAGAGAAAACATTTGTGGCACGCAGTTCGCTGATTGGCCAACGC
CCCCTGCGGCGGAATTTAAAAAGCGGCAAAAATTTAGGGCACGGTCGAAG
ATCCTTGGACGACGGGTGACGTCATCCACGGTGGATTCGAGGACAGCACC
CTGGGAGATCTTGGCAAAATCGCGTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:11297..14773-

>mRNA_E-siliculosus-1a_M_contig93.17324.1 ID=mRNA_E-siliculosus-1a_M_contig93.17324.1|Name=mRNA_E-siliculosus-1a_M_contig93.17324.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1152bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:11297..14773- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGGATCTCTTTGCTTCAACTCTGCCTCGGCTTCCTTGCTGTATGTTT
GGTGTTGGGCGAGCAAGTTGAGGAGGCACCGTCCAGATGAGGATCTCTTT
GCTTCAACTCTGCCTCGGCTTCCTTGCTGTATGTTTGGTGTTGGGCGAGC
AAGTTGAGGAGGCACCGTCCAGCAATTTGTTCAAGAAGTTCTTCACCAAG
ACAAAGAATGGCCTCGGCAAAGTGCGGAAGTCGCTTGCTGTTAAGAAGGA
CAAGGCGGTAGACGAGGAGCAATTTGTTCAAGAAGTTCTTCACCAAGACA
AAGAATGGCCTCGGCAAAGTGCGGAAGTCGCTTGCTGTTAAGAAGGACAA
GGCGGTAGACGAGGAGGACCCGCTAGGAGAAGGGGTTGAGGCAGTGCTAG
ACGCCATCGACGAATTCGTGGCCGAGGGGGAGAAAAACACCGGAAAAGCA
GCGGAGGACGTAAAAAAAGTTGTCGACGAGACTAAGGAATCGGTGAAGAG
TGCTATTTCAGCCTCCAAGGACAAGTTAAACGAAGCGGGTGCCGACATCA
AGTCGACGGTAGACGCAGCTGTCGAGGGTGCAGCAGCGGATATGGAGGCG
GTCAGAGGGTCTCTTCAGGACGGCATCAAGAATGTCGGAGATCAAGTCAC
CGAAGCCGCTAGGGAGGCCGCGGAATCTGCTGCGGCAGCGTCTAAACAGG
CGCAAGAGGACGCTGAAGAGACCGCCGAGAAGGCGTCCACGGCTGCGGGA
GAGTTGTGAGACCCGCTAGGAGAAGGGGTTGAGGCAGTGCTAGACGCCAT
CGACGAATTCGTGGCCGAGGGGGAGAAAAACACCGGAAAAGCAGCGGAGG
ACGTAAAAAAAGTTGTCGACGAGACTAAGGAATCGGTGAAGAGTGCTATT
TCAGCCTCCAAGGACAAGTTAAACGAAGCGGGTGCCGACATCAAGTCGAC
GGTAGACGCAGCTGTCGAGGGTGCAGCAGCGGATATGGAGGCGGTCAGAG
GGTCTCTTCAGGACGGCATCAAGAATGTCGGAGATCAAGTCACCGAAGCC
GCTAGGGAGGCCGCGGAATCTGCTGCGGCAGCGTCTAAACAGGCGCAAGA
GGACGCTGAAGAGACCGCCGAGAAGGCGTCCACGGCTGCGGGAGAGTTGT
GA
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