mRNA_E-siliculosus-1a_M_contig93.17373.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17373.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17373.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:508317..508891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size354
Model size575
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936471.8691082-UTR-E-siliculosus-1a_M_contig93:508316..5085371622936471.8691082-UTR-E-siliculosus-1a_M_contig93:508316..508537Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 508317..508537 +
1696251094.1423314-UTR-E-siliculosus-1a_M_contig93:508316..5085371696251094.1423314-UTR-E-siliculosus-1a_M_contig93:508316..508537Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 508317..508537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936471.885393-CDS-E-siliculosus-1a_M_contig93:508537..5088911622936471.885393-CDS-E-siliculosus-1a_M_contig93:508537..508891Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 508538..508891 +
1696251094.1531494-CDS-E-siliculosus-1a_M_contig93:508537..5088911696251094.1531494-CDS-E-siliculosus-1a_M_contig93:508537..508891Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 508538..508891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17373.1prot_E-siliculosus-1a_M_contig93.17373.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 508538..508891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17373.1

>prot_E-siliculosus-1a_M_contig93.17373.1 ID=prot_E-siliculosus-1a_M_contig93.17373.1|Name=mRNA_E-siliculosus-1a_M_contig93.17373.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=118bp
MPQGTLPRGGDATNTTVKTTPVFAGPSTSAAAAAAAAVVAAGAEASTANY
SRNPLSRSVRRNTQTKESRSLRQHDAKCQRERQHSSTDKREHYLPSARKQ
EKLRENRHRPSVSKRRC*
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mRNA from alignment at E-siliculosus-1a_M_contig93:508317..508891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17373.1 ID=mRNA_E-siliculosus-1a_M_contig93.17373.1|Name=mRNA_E-siliculosus-1a_M_contig93.17373.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=575bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:508317..508891+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TAATGGACAGAGCCACAGCAAGAGACACAACACAACAAAACAAAAACGGT
TACTGTACGCCGCCAACGTCTCGGTTGTGCAAACACAGAAACAGAGGCAC
GGAAATCTACGTTCCGGTGCGTGCTTGTTCGCAACAACAGCAGCTCTAAA
CCACGAGAACGCGGCAGCAGCGAGTGCATGCCTCAAGGTACCCTCCCCGG
GGGCGCGGCAGCAGCGAGTGCATGCCTCAAGGTACCCTCCCCCGGGGGGG
GGACGCGACAAATACGACAGTGAAAACCACGCCGGTTTTTGCGGGTCCGT
CTACCTCAGCAGCAGCAGCAGCAGCAGCGGCGGTGGTGGCGGCAGGGGCA
GAAGCGAGCACGGCCAACTATTCTAGGAACCCCCTCTCTCGTTCCGTCCG
CAGGAACACACAAACGAAAGAATCACGTTCGTTGAGACAACACGATGCCA
AGTGCCAACGAGAACGCCAACACTCAAGCACCGACAAGCGCGAGCACTAC
CTACCGTCAGCTCGAAAGCAGGAGAAGCTTCGGGAGAACCGCCATCGGCC
TTCAGTTTCGAAACGCCGATGTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:508317..508891+

>mRNA_E-siliculosus-1a_M_contig93.17373.1 ID=mRNA_E-siliculosus-1a_M_contig93.17373.1|Name=mRNA_E-siliculosus-1a_M_contig93.17373.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:508317..508891+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTCAAGGTACCCTCCCCCGGGGGGGGGACGCGACAAATACGACAGT
GAAAACCACGCCGGTTTTTGCGGGTCCGTCTACCTCAGCAGCAGCAGCAG
CAGCAGCGGCGGTGGTGGCGGCAGGGGCAGAAGCGAGCACGGCCAACTAT
TCTAGGAACCCCCTCTCTCGTTCCGTCCGCAGGAACACACAAACGAAAGA
ATCACGTTCGTTGAGACAACACGATGCCAAGTGCCAACGAGAACGCCAAC
ACTCAAGCACCGACAAGCGCGAGCACTACCTACCGTCAGCTCGAAAGCAG
GAGAAGCTTCGGGAGAACCGCCATCGGCCTTCAGTTTCGAAACGCCGATG
TTGAATGCCTCAAGGTACCCTCCCCCGGGGGGGGGACGCGACAAATACGA
CAGTGAAAACCACGCCGGTTTTTGCGGGTCCGTCTACCTCAGCAGCAGCA
GCAGCAGCAGCGGCGGTGGTGGCGGCAGGGGCAGAAGCGAGCACGGCCAA
CTATTCTAGGAACCCCCTCTCTCGTTCCGTCCGCAGGAACACACAAACGA
AAGAATCACGTTCGTTGAGACAACACGATGCCAAGTGCCAACGAGAACGC
CAACACTCAAGCACCGACAAGCGCGAGCACTACCTACCGTCAGCTCGAAA
GCAGGAGAAGCTTCGGGAGAACCGCCATCGGCCTTCAGTTTCGAAACGCC
GATGTTGA
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