mRNA_E-siliculosus-1a_M_contig93.17364.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17364.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17364.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:442488..443233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size375
Model size746
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17364.1prot_E-siliculosus-1a_M_contig93.17364.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 442646..443020 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936471.677575-UTR-E-siliculosus-1a_M_contig93:442487..4426451622936471.677575-UTR-E-siliculosus-1a_M_contig93:442487..442645Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 442488..442645 +
1696251094.0738304-UTR-E-siliculosus-1a_M_contig93:442487..4426451696251094.0738304-UTR-E-siliculosus-1a_M_contig93:442487..442645Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 442488..442645 +
1622936471.7130737-UTR-E-siliculosus-1a_M_contig93:443020..4432331622936471.7130737-UTR-E-siliculosus-1a_M_contig93:443020..443233Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 443021..443233 +
1696251094.0973222-UTR-E-siliculosus-1a_M_contig93:443020..4432331696251094.0973222-UTR-E-siliculosus-1a_M_contig93:443020..443233Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 443021..443233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936471.6956663-CDS-E-siliculosus-1a_M_contig93:442645..4430201622936471.6956663-CDS-E-siliculosus-1a_M_contig93:442645..443020Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 442646..443020 +
1696251094.0853155-CDS-E-siliculosus-1a_M_contig93:442645..4430201696251094.0853155-CDS-E-siliculosus-1a_M_contig93:442645..443020Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 442646..443020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17364.1

>prot_E-siliculosus-1a_M_contig93.17364.1 ID=prot_E-siliculosus-1a_M_contig93.17364.1|Name=mRNA_E-siliculosus-1a_M_contig93.17364.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=125bp
MGGVRVLSLVGGVTLVCGLTHELTVYALRAHGEEARPRNNVAQHGERGST
QRATCPIPISNDSEGDMRQNSRAQGIHPDQRLTTKRSQRDTFVVTGCSGG
AMKGAPPVPFSCLCCSKNTHAQPS*
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mRNA from alignment at E-siliculosus-1a_M_contig93:442488..443233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17364.1 ID=mRNA_E-siliculosus-1a_M_contig93.17364.1|Name=mRNA_E-siliculosus-1a_M_contig93.17364.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=746bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:442488..443233+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCGCTGTGACCGACTCATGGAAAGAGGTGTTACTGAAAGTCTCTGCCGGA
CAAACTAGTTCGTGTGGTTGTCTTTGTTTATAGCATTCTCCGCGCTAGGC
GGCTGGCCCAAAGACAGAGTTGCTGAATTAGGAAAAAATGTGATCAACGC
TCCCCCAGATGGGCGGCGTGCGTGTACTGTCTTTGGTGGGGGGAGTCACA
CTCGTATGTGGGCTGACCCATGAATTGACGGTGTACGCTCTGCGTGCACA
TGGAGAAGAAGCACGGCCTAGAAATAATGTGGCTCAACACGGCGAGAGGG
GGTCGACACAACGTGCAACATGTCCAATTCCAATCTCCAACGATAGTGAG
GGCGACATGCGGCAGAACTCTCGGGCACAGGGCATACACCCCGACCAACG
GTTAACAACAAAACGTAGCCAAAGAGACACATTTGTCGTGACGGGGTGCT
CCGGAGGGGCGATGAAAGGAGCCCCCCCCGTCCCTTTTTCCTGTCTTTGT
TGCAGTAAAAACACACATGCCCAACCTTCGTGAGCGCGCCTACCGCCCAC
CTCTACGGACAACCACGAACTGAGAATAATAGACTTCAAACACGTCCACG
CACTGCTCTCAGTACGCTCGATAATGTATCACCCATCCCATCCCAACTGA
CTGCAGTAGAGATCTCCCCTTGTTCGATGCTCACCGCACACACAAGTTGC
CCACCGTGTACATAAAACACGTTCGGGTGGCAGGAGTGGTTGAACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:442488..443233+

>mRNA_E-siliculosus-1a_M_contig93.17364.1 ID=mRNA_E-siliculosus-1a_M_contig93.17364.1|Name=mRNA_E-siliculosus-1a_M_contig93.17364.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=750bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:442488..443233+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGCGGCGTGCGTGTACTGTCTTTGGTGGGGGGAGTCACACTCGTATG
TGGGCTGACCCATGAATTGACGGTGTACGCTCTGCGTGCACATGGAGAAG
AAGCACGGCCTAGAAATAATGTGGCTCAACACGGCGAGAGGGGGTCGACA
CAACGTGCAACATGTCCAATTCCAATCTCCAACGATAGTGAGGGCGACAT
GCGGCAGAACTCTCGGGCACAGGGCATACACCCCGACCAACGGTTAACAA
CAAAACGTAGCCAAAGAGACACATTTGTCGTGACGGGGTGCTCCGGAGGG
GCGATGAAAGGAGCCCCCCCCGTCCCTTTTTCCTGTCTTTGTTGCAGTAA
AAACACACATGCCCAACCTTCGTGAATGGGCGGCGTGCGTGTACTGTCTT
TGGTGGGGGGAGTCACACTCGTATGTGGGCTGACCCATGAATTGACGGTG
TACGCTCTGCGTGCACATGGAGAAGAAGCACGGCCTAGAAATAATGTGGC
TCAACACGGCGAGAGGGGGTCGACACAACGTGCAACATGTCCAATTCCAA
TCTCCAACGATAGTGAGGGCGACATGCGGCAGAACTCTCGGGCACAGGGC
ATACACCCCGACCAACGGTTAACAACAAAACGTAGCCAAAGAGACACATT
TGTCGTGACGGGGTGCTCCGGAGGGGCGATGAAAGGAGCCCCCCCCGTCC
CTTTTTCCTGTCTTTGTTGCAGTAAAAACACACATGCCCAACCTTCGTGA
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