mRNA_E-siliculosus-1a_M_contig93.17365.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17365.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17365.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: D8LST2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST2_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.380e-22
Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:   47 PNVYLYTGCIVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYTVIAEFHGEGTKPAEAQQRIAAYGETTRELGQEIQ 280
            PNVYLYTGC VQVGDD +YLDALL                   TVIAEFHGEGTKPAEAQ+RIAA  +TTREL +E+Q
Sbjct:   16 PNVYLYTGCKVQVGDDPVYLDALLXXXXXXXXXXXXXXXXXXCTVIAEFHGEGTKPAEAQERIAACRDTTRELEREMQ 93
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: A0A6H5JU89_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU89_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.230e-13
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 2 
Query:   62 YTGCIVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYT 178
            ++GC++QVG+D LYLDALLKGYP RFVNHSC PN YL+T
Sbjct:   54 FSGCLLQVGNDPLYLDALLKGYPTRFVNHSCGPNAYLHT 92
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: D8LST4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST4_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.080e-13
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:   68 GCIVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYTVIA 187
            GCIVQVG+  LYLDALL+GYP RF+NHSC PN YLYTVIA
Sbjct:  196 GCIVQVGNGPLYLDALLQGYPTRFLNHSCDPNAYLYTVIA 235
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: A0A6H5L6I1_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I1_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.840e-5
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:   74 IVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYTVIA 187
            IV+ G+D +++DA  KG  ARF+NHSC PNVY+  + A
Sbjct:   36 IVRAGEDEMFIDATRKGNLARFLNHSCDPNVYMLALTA 73
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: A0A6J1NEU8_BICAN (histone-lysine N-methyltransferase trithorax n=4 Tax=Satyrini TaxID=127320 RepID=A0A6J1NEU8_BICAN)

HSP 1 Score: 50.4 bits (119), Expect = 4.410e-5
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 2 
Query:   68 GCIVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYTVIAEFHG 199
            GC +   DDHL +DA LKG  ARF+NHSC PN Y  + + + HG
Sbjct: 4334 GCYMFRIDDHLVVDATLKGNAARFINHSCDPNCY--SRVVDIHG 4375
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BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 8.150e-5
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:   74 IVQVGDDHLYLDALLKGYPARFVNHSCTPNVYLYTVIA 187
            +V+ G+D +++DA  KG  ARF+NHSC PNVY+  V A
Sbjct: 1989 VVRFGEDEMFIDATRKGNLARFLNHSCDPNVYMLAVTA 2026
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LST2_ECTSI1.380e-2262.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU89_9PHAE1.230e-1374.36SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LST4_ECTSI2.080e-1380.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6I1_9PHAE2.840e-552.63SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6J1NEU8_BICAN4.410e-552.27histone-lysine N-methyltransferase trithorax n=4 T... [more]
A0A6H5JJY6_9PHAE8.150e-552.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:446245..449664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size144
Model size280
Exons3
Ec32 orthologEc-15_002700.1
Ec32 ortholog descriptionProbable SET domain pseudogene
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17365.1prot_E-siliculosus-1a_M_contig93.17365.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 446245..447393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936471.0564728-CDS-E-siliculosus-1a_M_contig93:446244..4463111622936471.0564728-CDS-E-siliculosus-1a_M_contig93:446244..446311Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 446245..446311 +
1696251093.83041-CDS-E-siliculosus-1a_M_contig93:446244..4463111696251093.83041-CDS-E-siliculosus-1a_M_contig93:446244..446311Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 446245..446311 +
1622936471.0798216-CDS-E-siliculosus-1a_M_contig93:447316..4473931622936471.0798216-CDS-E-siliculosus-1a_M_contig93:447316..447393Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 447317..447393 +
1696251093.8418431-CDS-E-siliculosus-1a_M_contig93:447316..4473931696251093.8418431-CDS-E-siliculosus-1a_M_contig93:447316..447393Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 447317..447393 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936471.0989215-UTR-E-siliculosus-1a_M_contig93:447393..4474271622936471.0989215-UTR-E-siliculosus-1a_M_contig93:447393..447427Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 447394..447427 +
1696251093.856253-UTR-E-siliculosus-1a_M_contig93:447393..4474271696251093.856253-UTR-E-siliculosus-1a_M_contig93:447393..447427Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 447394..447427 +
1622936471.1151145-UTR-E-siliculosus-1a_M_contig93:449562..4496641622936471.1151145-UTR-E-siliculosus-1a_M_contig93:449562..449664Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 449563..449664 +
1696251093.8680062-UTR-E-siliculosus-1a_M_contig93:449562..4496641696251093.8680062-UTR-E-siliculosus-1a_M_contig93:449562..449664Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 449563..449664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17365.1

>prot_E-siliculosus-1a_M_contig93.17365.1 ID=prot_E-siliculosus-1a_M_contig93.17365.1|Name=mRNA_E-siliculosus-1a_M_contig93.17365.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=48bp
MRKGYPARLFNHSCNPKRVPLHGVHSTSRRRPPVPGCPAEGVPSSVC*
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mRNA from alignment at E-siliculosus-1a_M_contig93:446245..449664+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17365.1 ID=mRNA_E-siliculosus-1a_M_contig93.17365.1|Name=mRNA_E-siliculosus-1a_M_contig93.17365.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3420bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:446245..449664+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGGAAGGGGTACCCGGCGAGGCTTTTCAACCACTCGTGCAATCCCAA
ACGTGTACCTCTACACGGTGAGCACCATACCATGGCTCCAGCAGTGATAG
GGTTTAAACGTAACTACTAACAGTCAGTTAGACGGGATGGATGACGCATT
GTCGAGTGTACTGGGAGTATTACGTAACCATGCTTGTGTTGACTGACGAT
CTTGCGTACCCGAAACGAAGTGATTTCGCAGCACCCTACCGTACCCTCGA
CCCACGCCGTGTCCACCACGTTCACGTTGGGAATTGTTGCTGCTGCTGCT
GCTGCCGATGTACATGTGTTTGGTAGCGAAGAAAAGCAATGGCAAGAAAT
CAACCCTGTTTGGACATGAAGTGTGTGAATTCGGATGGCGCGACGTTGCT
GTTCTTCTAGTTGACACGCCTGAGGCACAAGCGAGTGCATAACCCCCGGA
AGTAATCAAGAGTCACGCTCCCCGAGATCGGCGCCGTGCTAAGATATTCT
TCCAACCGCGTTTGCGGGCTCACGCTTGTGGAATCACGGCGTAGATTATG
TGTACGGAGAAGGACAGAACTGCCTAGGTCAAACATGGCTTTGCACGGTG
CGAAATGGGGGGCGCTATACAGCACAGCTCTCGGTTACACGACAGAAAGC
CCGACCAACGGCTTCACTCCAAGAACAAGGTCGACCAGACACAATTGTAG
AAAGGGGTGCTCTCGCAACAAGATACCGTTCTCCTGTCTTTGCATCTAAA
GAAAACCTCCAATCTTCGTGGGTGCGCTTGCCGCCCGCCTGTACAAAATG
CACACACTAGGTAAAACAGACCTTCAAACACGATCACATGATGCTCTCAG
TGCGCTCGACAAAGTAGTATCACCCACCCCATCCAACTGACGGCTATATA
GATCTAGCCTCCAGGTGGATGAATTGCACAATTCTCACCAATTCTCACCG
TGTAGAGCTACACGTTTGGTCGCATGAATGGTCAAAGAACCAGGAAGGGT
TGCCCTTCACCATCCCGTCCAAGCACACGGGTTCATCCCCAGCTTGGACC
ACGCACTCCTACCATGAGGCAGGGGTGCATAGTACAAGTCGGAGACGACC
ACCTGTACCTGGATGCCCTGCTGAAGGGGTACCCAGCTCGGTTTGTTAAC
CACTCGTGCACACCCAACGTTTACCTCTACACGGTGAGCAGCGTACCATG
CTTCCAACGGTAGGCTAGGTCTCTGTGTCAGTCAGTTAGATGGGATGGGA
TGGGTGACACTACTTTGTCGAGCGTACTGCGAGCATTGTGAAAACTTGAC
AACGTTGTTGGGAACGGAGAGAGGACTGACTGGCGAACATCTGCGTACCC
GAAAGGATGTGATTTCACAGCACGCTATCATACCATCGACCCACGCCGTG
TTCACGTGAGGTATGGTTGCTGCTGTCGCATACGTATGATGTGCTAGACA
GCAAAGCAAATCAAGGGCAACACACCGTCTAATTCAACCCTGTTTGGGCT
TGAAAGTATAAGTGCGTGAAGACGAGGGTGCCACGTTGCTCTTCTACAAA
CATGTTTTTCAAAGCAAGGACGGGGTTTGCTGTCGACGTGCCAGCTGAGG
CGTACGTGTATCTCTCTTTCATATTATCATTTTCTCGAGAGCGCAGCAGA
AATTTCTCTCGGGCTCTCACAGCGCTGCATTTCGGCTCTCTAGAGCGCTC
ACAGGCCTGCATTTCTCCAATCTTCATTTCCCGTATTCCCGATTTCCCGC
TTTTTTCCGCTTTTTTCATCTCTGTCACGTTTCCACCCTTCCTTTCGCAC
GCCTCTCACACGGGGCCTTTATTTTCCTCTCTCGGTTGTCACACACACAT
CCATTCTTCACACATCCAGTCTGCTTTTGCCCGTTGCTCTCCACTGCTGT
ATATCGTTCGACATCCACAACATTCAACTTTCCTTTTCGTTGCTTTTCAG
TTCCGAAACTTGACTACTTGCTGTAGCAAGTACCTGTCAGTCTCGTTCTG
AACGGACGGGTTAAATCGGGAATGCCCGTCCCTTTCATCTGCTGCTGCTC
TCAGCCATCCACACAATGTCATCACGTTTTACACCAGTCAGTCTCTCTGT
CTCCCCTCACACACCATCATCAGTAGTCTGTCTCTCCCCTCTCGCATGGC
CCAGCACCATCTGTCCTGGGTCTTTGGGCGCCTCGTGTTCTCCTTTCATT
CCACTTCCTTCTCTTCGGAACGCTTCTCTTCCGAAATTCCCGGGCGAGGG
GCGGGGTTTCTTCTCAGTTCCGACAATTGACACACTGTCAGTTAGCTGCT
CCACTATTTGAGACGTCGATGGACCCGTTGTGCACGGGTTATCTACACTA
CGGGTTGAACGCAGGCAAGATGCGTCGTGGTGTGGCGCCCTCTCAGCTCC
TCGGCCAACTGCGTTCGTTCGTTCATTACCTACCTTTTCACCCCAGCCTC
TGCCTCTTCTTCCACATGTCGAGGAACAGCTTCTCAGCGCAGACACCCCC
AACCAAGCGCAAGCAGGTAGCAGAGTACACTACAGTCAGTCTCTCTCACC
CCTCTCGCATGTCCCACATAATAACTGCGCAACTAACTATCTGTCTGTCA
TCTCGTTGGAGTTTAATTGTCGCTTCTCTTCGGAACGACTCTCTTCGAAA
TTTCCCTGGCGAGGGGCAGGGTTTCTTAGGAAGTATACATGAACAACAAC
AGCACACTTCTGAGCGAGGCGGCAAAAACGGCCAGAGTACGCCCTCTTTC
TCTCTCTGCAACATTGTTTTGTTTTCTAACTTGCTTGCGCTTATCGCATA
TCTTGGAATCGATCTACTGAGCGGGGCGGCGAAAGCCGCCAGAGTACGCC
CCCTCTCTCTCTCTTTGTGCACTAAGCCGTTTTTCATTTATTTTCACTCT
ATATTGCTACCACCGCTAGCTAATCGCGTATCTTGGAATCGATCTACTGA
GCGAGGCGGCGGAAGCCGCCAGACCACCTTGTAGCATGTACGAATGTTTA
AAAATACCACATAGGTGCGAATTCTTTGGAACACGTGTAGAAGCACAAGG
TAAGGAGACTACAGGTCGTTGGGTGATCGCCAAACTCACAAAACGAAGCG
CCCGCGTCGGCAAAGCACGTCGTTCCACTGCTGTAGCTTGTATGAAAAAT
GCGTGCGCCTGAGAGACAACTCTCGCTACAGGCCTTGTGTTGCCCTCGCT
CTCGCACAGTAGCCCATGTCGGAGGACCCTCTATGATGCGACACTCGAGT
CGACGACCTCTCCTTGGAACTCCGCTACCACCTCCTGGGCCCCGATGGCT
GCCATCGGGGCCCAGGAGGTCATCGCCGAGTTCCACGGAGAGGGCACCAA
ACCTGCTGAGGCCCAGCAGCGGATCGCGGCGTACGGCGAAACTACGCGAG
AGCTAGGGCAAGAGATACAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:446245..449664+

>mRNA_E-siliculosus-1a_M_contig93.17365.1 ID=mRNA_E-siliculosus-1a_M_contig93.17365.1|Name=mRNA_E-siliculosus-1a_M_contig93.17365.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:446245..449664+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAGGAAGGGGTACCCGGCGAGGCTTTTCAACCACTCGTGCAATCCCAA
ACGTGTACCTCTACACGATGAGGAAGGGGTACCCGGCGAGGCTTTTCAAC
CACTCGTGCAATCCCAAACGTGTACCTCTACACGGGGTGCATAGTACAAG
TCGGAGACGACCACCTGTACCTGGATGCCCTGCTGAAGGGGTACCCAGCT
CGGTTTGTTAAGGGTGCATAGTACAAGTCGGAGACGACCACCTGTACCTG
GATGCCCTGCTGAAGGGGTACCCAGCTCGGTTTGTTAA
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