mRNA_E-siliculosus-1a_M_contig93.17346.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17346.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17346.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:316170..317033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size144
Model size145
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936470.919039-CDS-E-siliculosus-1a_M_contig93:316169..3162481622936470.919039-CDS-E-siliculosus-1a_M_contig93:316169..316248Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 316170..316248 -
1696251093.780634-CDS-E-siliculosus-1a_M_contig93:316169..3162481696251093.780634-CDS-E-siliculosus-1a_M_contig93:316169..316248Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 316170..316248 -
1622936470.9357119-CDS-E-siliculosus-1a_M_contig93:316968..3170331622936470.9357119-CDS-E-siliculosus-1a_M_contig93:316968..317033Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 316969..317033 -
1696251093.796513-CDS-E-siliculosus-1a_M_contig93:316968..3170331696251093.796513-CDS-E-siliculosus-1a_M_contig93:316968..317033Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 316969..317033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17346.1prot_E-siliculosus-1a_M_contig93.17346.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 316170..317033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17346.1

>prot_E-siliculosus-1a_M_contig93.17346.1 ID=prot_E-siliculosus-1a_M_contig93.17346.1|Name=mRNA_E-siliculosus-1a_M_contig93.17346.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=48bp
GCGLGETPPRVSTGVRRFDGCRKEGKATMLVLPLLTQDGSRGIAGLQL
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mRNA from alignment at E-siliculosus-1a_M_contig93:316170..317033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17346.1 ID=mRNA_E-siliculosus-1a_M_contig93.17346.1|Name=mRNA_E-siliculosus-1a_M_contig93.17346.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:316170..317033- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTTGCGGCCTTGGAGAAACGCCTCCAAGAGTCTCGACGGGGGTTCGGCG
GTTCGACGGATGCCGGTGAGTTTGGTTTCGCTTCTTGGCCGCGACCCCGG
GTGGGAGATCCAAGTGCGTGCACGGCACAGCGCAGCAGCCGGCAGTGCCA
AGTGATCCTCCGTCTCCCTGTGCTCACATTGTCTGGGCCTTTCGCGATTT
TGTTCGTTCAACCCGGAAATCTAACATGTTCTCTACATTTGTTTTTGAAA
TTTCTCTCCTAGACTTCTAGTTGGTTTGAGGCCATGGCGTAGGACGTACA
ACGTTGGCACGCGAGGCAGACGTTTTTGCTCAGCTTGGCCTTCCGTTGGT
CTCGTATTCCGTGTGTTCGGACGGCGTATCCACAATCTGCTTGACATCTG
CTGGCGTAAATGTTTGACCAACGTCGAGGTTTCGTTTATAACCGCAAGAG
AGCACGGTCAGGCTTTTTCACGAGAGCGTCCGCGTCGCTTGCAATCTAGC
ATCTGTTGCGACGTCTAGGTCGACGCCGTACCATGAGTCATGGTGCTGAT
ACATCGCTTGTGCGTCGTTTGCAATTGCGTCTACTCTCCGCCGTTTATGC
AGCTAGCCTGGAGGCACGAGTCGCTGAACTTGAAAAATGGAAACAAGGTG
ATTTGTAGATAGTTTTGAACGCGGCAGTTGCACTTTTGGCATAAGCGCGG
TCAGCGAAGCCTCACACCCGACGACACGATTAGCCCCGAGAATAATCTTT
AAGTGGTTTTGCGCTCGAATGCTCGCCATATGCAGGAAAGAAGGGAAAGC
TACGATGCTTGTTCTGCCTCTGCTGACTCAGGATGGTAGCCGCGGAATCG
CTGGACTACAGTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:316170..317033-

>mRNA_E-siliculosus-1a_M_contig93.17346.1 ID=mRNA_E-siliculosus-1a_M_contig93.17346.1|Name=mRNA_E-siliculosus-1a_M_contig93.17346.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:316170..317033- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTTGCGGCCTTGGAGAAACGCCTCCAAGAGTCTCGACGGGGGTTCGGCG
GTTCGACGGATGCCGGGTTGCGGCCTTGGAGAAACGCCTCCAAGAGTCTC
GACGGGGGTTCGGCGGTTCGACGGATGCCGGAAAGAAGGGAAAGCTACGA
TGCTTGTTCTGCCTCTGCTGACTCAGGATGGTAGCCGCGGAATCGCTGGA
CTACAGTTGGAAAGAAGGGAAAGCTACGATGCTTGTTCTGCCTCTGCTGA
CTCAGGATGGTAGCCGCGGAATCGCTGGACTACAGTTG
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