mRNA_E-siliculosus-1a_M_contig93.17343.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17343.1
Unique NamemRNA_E-siliculosus-1a_M_contig93.17343.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:232049..238610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size303
Model size604
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17343.1prot_E-siliculosus-1a_M_contig93.17343.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig93 232348..238610 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936470.8431628-UTR-E-siliculosus-1a_M_contig93:232048..2323471622936470.8431628-UTR-E-siliculosus-1a_M_contig93:232048..232347Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 232049..232347 -
1696251093.7377648-UTR-E-siliculosus-1a_M_contig93:232048..2323471696251093.7377648-UTR-E-siliculosus-1a_M_contig93:232048..232347Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig93 232049..232347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936470.8676214-CDS-E-siliculosus-1a_M_contig93:232347..2324521622936470.8676214-CDS-E-siliculosus-1a_M_contig93:232347..232452Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 232348..232452 -
1696251093.7490783-CDS-E-siliculosus-1a_M_contig93:232347..2324521696251093.7490783-CDS-E-siliculosus-1a_M_contig93:232347..232452Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 232348..232452 -
1622936470.8821301-CDS-E-siliculosus-1a_M_contig93:238412..2386101622936470.8821301-CDS-E-siliculosus-1a_M_contig93:238412..238610Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 238413..238610 -
1696251093.760444-CDS-E-siliculosus-1a_M_contig93:238412..2386101696251093.760444-CDS-E-siliculosus-1a_M_contig93:238412..238610Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig93 238413..238610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17343.1

>prot_E-siliculosus-1a_M_contig93.17343.1 ID=prot_E-siliculosus-1a_M_contig93.17343.1|Name=mRNA_E-siliculosus-1a_M_contig93.17343.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=101bp
LSGVVHFSTIFYHSSAVFSNPLPQLFFRFSTRRTYLCSPCPVPARCVRPD
QRDWNKTSHQRGHRYQAPGRIYRQRSRTASEHHTTHRPATDKHDDTNDRV
*
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mRNA from alignment at E-siliculosus-1a_M_contig93:232049..238610-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig93.17343.1 ID=mRNA_E-siliculosus-1a_M_contig93.17343.1|Name=mRNA_E-siliculosus-1a_M_contig93.17343.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6562bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:232049..238610- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTTTCGGGTGTGGTTCACTTCTCAACGATTTTCTATCATAGTAGTGCCGT
GTTCAGCAACCCTTTGCCCCAGCTCTTTTTCCGATTTTCCACGAGGAGGA
CGTACCTCTGCTCTCCCTGTCCTGTTCCTGCCAGGTGTGTACGACCGGAT
CAACGAGACTGGAACAAGACATCTCACCAGCGCGGACACCGATATCAGGC
AAGGGCTAGACCATACACATATCGATGGTTTGATCCATGGCGTTTTTACC
CGGTGTTGACGAGAGTTTTCGATCGGGGTGGGTGTTTTCCGTAGTTTTCG
CCATTTGGGAGCCTCAGTGGTCCGAGACTGCTACAGTAGTGTACAACAAC
TTCGTCCCGTCTGGTAGGAATGGGAGTGAAATATTGTGTTTTAGTAGTAG
AGACTCGTTAGGATACCGGCGAGGCGTTTCGCTGCGCGGAACGTGTGGTA
CGGGGGATTTCTCCCTGTGTGGGCCCCATAAAATGATGTTAAAGGGAATT
CTCAAGCAAAACCAACAATATAACGTTGTTGTCGAAGACCAAATACACTG
GCGTTTGTTGTGAACGGAAGAATTCGGAACATCTCCTAGATCTACGAACG
TGTTTGGGTTCTTGTTGCGCTGCCCTGGAGGCGTGTAGGTTCGGATGCGT
TGGTTCGGGTTTTCTGTAGTCCCTCGAAGAGAACGGCCTCAAAGGCGCTC
TCATTCTGCTGCCTCGCTGCTCCGGCAGCGAGAGTTTGAGAGACGCGTGT
CCATTGAACTCAAGGGCAACTGGTTGAGGAAAACCCAGCGGATAGCACGC
AGCCCGGTTTGGAGGGTCACACGGAGGTCAGCAGGTAGCTACGTCGAAGT
TCGGACCACAGCCAGCAAACAATGCCTGACAGTTTTTCTCCCGCCCACCC
ACCCCTTTTCTTTCGAAGACGGGGAGGCTCCAGAGTATTACAGTCTCGCT
ACGTAGTTCCTCGAGCGGACGCTCTAGCCAAGCGTGCTCCATCATCATCA
GGCCCTCGTCTCTCAGCCCAGTTAGGAACTGTATTGATTGTAATGCGTGC
GAATTTGCGTCGTTGTAATTATGATAATTGATAAAAATAGGTTGGAAGTG
TTTGCCATTGGCTCTACTGTAGGGTTATCTTATATTTGCCAAGACATTGT
AATGACGACTGATTGGTTGCCAAATAGTTTTTTTCGGTATTCTACACTTT
TTGTATTTGAAACAAATACTACAATATACGATACGCCTAGAAACAAGCAT
TTCGCTTACCATATCGGGGGGGTGTAGTGGACCCGCACGCACCCACCGGC
TTCATTCAGCGGATTTGATTAACACCAACTCGCTCATCGAACAGCTGGCA
ATCCACCACTCGCTCTTGTTGTTCTTCTGATAGCATCGTAGTCGTTGTTG
TGGGCCTGGCCTGTTCAAATCGGGCAAACTAGAAACGCTTTCCCTTACAA
CCACATGTACTGGCTTGGCGACGGAATTTCATGTGAATCCAACTTGGGGA
TGTCGACCGTAAGAACCAGCAGTCCGGTGCTGTGTGGCGTTTCGCGACAA
TCAAGGTTCGGCAGCAAGCAGTCGCTTTCACGCTGAAAGACTGTCGATAC
ATTTGTGAATCGTAACAACGTCGCTCAATCTGGATTGGTTGTTTAGGTGT
TTCTGTAACGTAGCGAAACGGCATTTCATCCCTCAATTGTGCGGGGCATA
CTCTGCATGTATCTCTGAGTGTATACCAGTCCTTGTGCATACGAGTATGT
CGCAATTCCAGCTCCGAAGAAGCATGAAGTGGTCGGCTACTGTTTGTGGA
GATGGAAAGATGGCAGGACCTCCTCTCAGGGATGAGTATTCGGTTTCTAT
GTGGGGTGTTGTGGAATGGTGTGTACCATTTGGGGCCTTGGTCAGTTTCG
GGACTCCTACGTTTGCAGTCGTAGTCCCCCGACCGGTATTATTTGCGGGG
AGAGGGACGGGTTTGTAGGAGTCAACGCCGCGCCTCGTGGTCAACGTGGC
TAGACAAGACGATGTGTGTTCCGTATGTCTCTCTCCCCAGCGTGTGGCCT
AGAAACCGAAGAATATTACTCATATGAAGCAGTGCGAAAGATAACAACAA
TAAACAGGCCCTCGTTTCTCAGCCCAGTTAGGACTACTATTGCTTGTGCA
TGCGTGCGAAGTTGCGTCGCTATCACTATGACCAATGGATGGAATTTGGT
TGGAAGTGCTTTTTGCCGTTGGCTCTAGCGTTCTTTTTCTTTTCTCAAGG
GGTCTGATTGGTTGGCTAGCTTGTACTTCGCACAAGTTGTTTTTGGTATT
TCTTGTAGAATGCCCATATGCATACAATATTTTTCAATCTGAAAACGTAC
ACCAATCAAAGGCGCGCCTACAAGCATTTGCCTTACTCTATCAAGGGGGT
GTAGTGGACCAGCACACACCCACCGGCTTCATTCATCGGATTTGATTGTA
GCACCAACTCGCTCATCGAACAGCTGGCAATCCACCACTCGCTCTTGTTG
TTCTTCTGATAGCATCGTAGTCGTTGTTGTGGGCCTGGCCTGTTCAAATC
GGGCAAACTAGAAACGCTTTCCCTTACAACCACATGCACTGGCTTGGCGA
CGGAATTTCATGTGAATCCAACTTGGGGATGTCGACCGTAAGAACCAGCA
GTCCGATGCTACGCGGCGTTTCGCGACCATCAAGGTTCGGCAGCAAGCAG
TCGCTTTCACGCTGAAAGACTGTCGATACTTTTGTGAATCGTAACAACGT
CGCTCAATCTGGATTGGTTGTTTAGGTGTTTCTGTAACGTAGCGAAACGG
CATTTCATCCCTCAATTGTGCGGGGCATACTCTGCAGTACCTCGGAGCGT
TCACACTCCGTGGTGAGTACCAGTATGTCGCAATTCCAGCTCCGAAGAAG
CATGAAGTGGTCGGCTACTGTTTGTGGAGATGAAAGATGGCAGGACCTCC
TGTCAGTGATATGTTGCAACACGTCCTTGGTTTCCTGTAAAATGAGCATA
GTGTTTACCACAGATATACAGTGTAGGGCGTTTCGTTGAATGTTCAGTTT
TGAGGACGGATTTTGAATCAATTGTTAAAATATCGCTAAATATTTCAACT
CAAAGAGCCATTTCCAACATCGGGCACACGATATGCAGCATGAAATTGGC
TGTTCAAGCTAATACCCTTAGAATACATTTATCTACAGTTGTATATTGTT
TTAGAAGTATTTTTAATAGACTACAGGTTTTAGGGCAAGCAGTCTAGGAA
GGGAAAAAGACAAAAAATTGAAGTATACAGTAATCAATAAGTGTAGAAAC
AACTAACACATATTAGTAGATGTATGAGCACGAAGCACCTACTAGAAGGT
TAACCAAACTTGTTCGATTCATAAGCGTATAGCCCAGGGCGTAGAAGCAT
ATTTCTCTGTGAGATAAATACAATAGATTCTAGTGTGAAGTCCCACGCTT
TTAAATGAACTAAACGTAAACAAACAGGCCTTGTTGATGTCGTTTTGCTC
GATATGGCCCAAACTTCGACGTAGCCAGCTGCTGACCTACTATTCCGGGT
GACCCTCCAAAGCGGGTTGCGTGCTATCCACTGTGCTTTCCTCAACACTT
GCCCTTGGGTCCAGTGGACACGCGGCTATCAAACTCTGGTTGTGGGAGCA
GCGAGGTAGCAAAATGAGAGTGCTTTTGAGGCCATTCTCTTCGAGGGACT
CCAGGAAACCGAACGAAGGCATCCGAACCAACATGTGTCACGGGCGGTAC
AACAAGAACTCAAACACATTCGTAGATCTGGGACATGTTCCGAGTTCTTC
CGTCCACCACAAACGTCAATGTATTCGGTCTTCGACCACACACAAGAAGG
CTGCCAAAATGTATTTAGGTGAGGTTGGATGCACAATGTAGAGGTTTGCC
AGGTGGCGAGATGGGTGTTGAGAAGCGGATCCATGTGCGTCTGGTACCCG
TGGGTGTTAGCGACGCGCATGGCAGAAAACACCTGCGACTAGCCAGGACC
ACTCATACGTTAAGGCGTATACTCCTTTGGAGTGCCATGGTACCGTTTTT
CGTGCATCTGCATGGGACTTCGCTCTCTTGCTTTGAGTCGCCGTCGGTTC
AAGGTTCTTCCACACTCGTTTTCCCCAAGGTGTTGGGAGACACGTTGGCA
GTTCCTGCTTGTACAACAGTGAGGTACCATTGTCCATAACCTAGGTCGGT
TGAACGGATACGATCACCACGTACTCAAAACAAGCGGACTGCACGTTCCA
TCCCGAACGATATCATTCGATGTAGGTAGGAGTTCACGGAGATATATGCA
CATGCCGTATCAATAGGCAGGGGCAGCTATCAAGTATCGTTGGGGCAGTG
AGCAGGCGAGTACTTCGGGAAATTCGTAGTGACAGGATAGGTTGCGACAA
GTCAGGCACTGCTCGGGTGTCGGGTCCGTAACATATCCTCGGTCCTATGA
CGGTTGCATGGGATGTTGCATACCTCCATGTTCAAAACGCGCAAAGACCA
CAGGACAAACCCGAAATCAAATCGTCTCATTGCGTGGTGTCGTTGATTGT
TTGAGCAAACGGCACAACAGGGTATAGGGTATACACCAAGGTCAAAGAGC
GACTCGGACGGGTACATTCCTTCTAGTATCGTGAACGGAGGCTTGCTGAT
TGATCGATGTCCATTTTCACCGTGCCGTGTTGCAAATACCATGGAGTGTG
CGGCTGCGTTTCTCTGGAACTGGACTGTAATATTTTTGGAAATGTGGCCT
AAGCTGATGGGAAACTGAACCCATCGATCGGCAGTTTCCTCCGCAGGAGT
CGCATTCCGGTATCGCCAAGAGACACCGAAATCACAAATCTTACCGCTCC
AACCAGTACTGGCCCCCGACATCCGAGACTTGCTCCATGGTTGAAAGCAG
CGTCGTTGACACGCCAATTGAAACAGAACATGTAGGATACATTCCAGAAT
GGAAATGGGTGGAGATGGAGCGTGTCTCGGATGTCGGTTGCGACGATTTG
TGTGGAAGCGGAAGGTTTGTGGTTTTGTTGTCGTTTTTTGCGGTAGCGAG
AGGTGACTCCTGCAGAGAAAACGGTCGACGGATGGGTCGCGGTTCCCGCA
GGTCAGCGTACGTTTTCGAACAACCAGTGCACAGTTCCACAGCAAAGTAG
CCGCGGGAGGGCTTACCTCAGGGTTTTCGTGACAAGCCAGGGTGGAGGTG
GGCATCGATCGGTCAGGTAGGCTCATTTGACGGTGCCCAAAGGCATGTAC
CCGGCTCAGTCGCTCTTCGGACGATTCGGGGTGTACCCCGTTGCGTCGTC
ATGTACCGTCGACTGTCTCGGTGTCGAATAGTCCGGCTCTTGTGTTGTCT
AGATGAAGCTGGGTTGCCCTTTCCGGATGGGGTATCCTCCAAGCTTCGGT
GGGCTTGTCGCAGGTCGGCGTACCGTATGATTCTGAGACAGGTTGCGATG
CGAGAAATATCTGCCTGCATAGGTATTGCAGTAGCTGCGCCCTCGCAAGT
GCTTGGTGGAATTGTGTTTTTCGCCGGCTCAGCGCGAAAACTCTCCCTGT
TAAAGGAATTTTTCGAGTGATTGGGTGGGGGGTGTAAAGGAGAGTGAGTC
ATATGCGAGTTGCAGCAATACGCCATCATACCGGGGCTTTTTATGCTGCA
CTCGCAGCCTAAAAAGCGTAAGGCGTATCATCAGTTCCCCGATGCCCCGA
AGTATTCGACAACAAAGTCGCATCTCAACAGAAACCAGCCACAGTACATG
TAAGCTGCTTCCGCGAGCTCTGTCTATTCTCCGAATAGAAGTACGACGAA
AAGTGGCGCGTTTTGGGTGGTGAAGTGAGCATGTCGCCGTACCGAATATT
TTCGGTAAGCCCTCATCACGTCGTACGATGGCTCTTCATGGACGGAGCAT
TTTGTTTTCCCGAAACAAAGTGACCATCCGCGTAGTATGTGATTACACGC
TGGGCACCGCTGGATCGGGGCATTTCAATTGCTCATGAAATGCCGATTTA
TCGGTATACAGGTCGCCGGTGCTGTTTCACGTTTGATTTGGAGCGGCTAA
GATGCCCGCCCGCCCCCCCCCGTAAATCCTTGCTCGCAGAATAGCTGCTG
ACCCTTGCACTTCCGGCCTCTCTGTCTGCAACTGGTCTCTTTGTTGCTAT
CCTCAAAGGCACCAGGGAGAATCTATCGTCAGCGATCAAGAACGGCTTCT
GAGCACCACACAACGCACCGTCCAGCCACAGACAAACACGATGACACCAA
CGACAGGGTCTGAAGGTTTCCCAAGTCTTAATGGCGCAAGTACGTGTTCT
GTAATACGATACGTCGTGTTGGGTGCGGAGGAAACGTAGAGATTGGGATT
GCATGATCAGATCACGGGTGTGTTGTAGGTGTCTCGCAAGACCGGATGAA
TGAAGGCTGTTCGGACGTCGTTGCCCCGACGATGCTGCTGTGTCGACTGC
CATGGAGGCAAGCGTTTATGTACGGGCAAAGGGTGGGAATGGCTTATGAC
AACATCGTGTCCGCGCAACATCGTTGAAAAGCCGTGCACACCCGCTATGC
CAGACATGAGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:232049..238610-

>mRNA_E-siliculosus-1a_M_contig93.17343.1 ID=mRNA_E-siliculosus-1a_M_contig93.17343.1|Name=mRNA_E-siliculosus-1a_M_contig93.17343.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:232049..238610- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTTTCGGGTGTGGTTCACTTCTCAACGATTTTCTATCATAGTAGTGCCGT
GTTCAGCAACCCTTTGCCCCAGCTCTTTTTCCGATTTTCCACGAGGAGGA
CGTACCTCTGCTCTCCCTGTCCTGTTCCTGCCAGGTGTGTACGACCGGAT
CAACGAGACTGGAACAAGACATCTCACCAGCGCGGACACCGATATCAGCT
TTCGGGTGTGGTTCACTTCTCAACGATTTTCTATCATAGTAGTGCCGTGT
TCAGCAACCCTTTGCCCCAGCTCTTTTTCCGATTTTCCACGAGGAGGACG
TACCTCTGCTCTCCCTGTCCTGTTCCTGCCAGGTGTGTACGACCGGATCA
ACGAGACTGGAACAAGACATCTCACCAGCGCGGACACCGATATCAGGCAC
CAGGGAGAATCTATCGTCAGCGATCAAGAACGGCTTCTGAGCACCACACA
ACGCACCGTCCAGCCACAGACAAACACGATGACACCAACGACAGGGTCTG
AGCACCAGGGAGAATCTATCGTCAGCGATCAAGAACGGCTTCTGAGCACC
ACACAACGCACCGTCCAGCCACAGACAAACACGATGACACCAACGACAGG
GTCTGA
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