prot_E-siliculosus-1a_M_contig92.17310.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17310.1
Unique Nameprot_E-siliculosus-1a_M_contig92.17310.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length159
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig92.17310.1 vs. uniprot
Match: D7FKR2_ECTSI (Glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR2_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 7.500e-91
Identity = 145/158 (91.77%), Postives = 150/158 (94.94%), Query Frame = 0
Query:    1 MTARLCVVALTFASVADLSPCAAFLLVSRGRAPPGTGCKPAPSRNSCAAALPATTKVDITPDLVRKTAVLAQIQVSDEEASRIVDVLAPRMEEFLGFVETMEEVAEASDGTFATLNCGSDFLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDEG 158
            MTARLCVVALTFAS+A LSPCAAFLL SRGRAPPGT CKPAPSRNSCAAALPATTKVDITPDLVRKTA+LAQIQVSDEE    VDVLAPRMEEFLGFVETM+EVAEASDG FATLNCGSDFLREDSA+RFSNVAA+MENMPIEEGNYLRVPKVGEDEG
Sbjct:   10 MTARLCVVALTFASLAVLSPCAAFLLASRGRAPPGTRCKPAPSRNSCAAALPATTKVDITPDLVRKTAMLAQIQVSDEE----VDVLAPRMEEFLGFVETMKEVAEASDGAFATLNCGSDFLREDSADRFSNVAAIMENMPIEEGNYLRVPKVGEDEG 163          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17310.1 vs. uniprot
Match: A0A6H5KRS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS3_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.970e-38
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0
Query:   91 MEEFLGFVETMEEVAEASDGTFATLNCGSDFLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDEG 158
            MEEFLGFVETMEEVAEASDG FATLNCGSDFLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDEG
Sbjct:    1 MEEFLGFVETMEEVAEASDGAFATLNCGSDFLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDEG 68          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17310.1 vs. uniprot
Match: A0A836CJS8_9STRA (C subunit of glutamyl-tRNA and/or aspartyl-tRNA amidotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.680e-15
Identity = 48/101 (47.52%), Postives = 62/101 (61.39%), Query Frame = 0
Query:   63 LVRKTAVLAQIQVSDEEASRIVDVLAPRMEEFLGFVETMEEVAEASDGTFATLNCGSD------FLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDE 157
            L+ KTA LAQ++VSD EA ++V    PR+  FLGFV  M+E A A+DG    +    +      FLR D A +F N  A+  NMP+ EG YLRVPKVG +E
Sbjct:   57 LILKTARLAQLEVSDAEAEQLV----PRVRSFLGFVAAMDE-AGAADGDAPPMGDSREGLGEGGFLRSDGAVKFENADAIAANMPLREGEYLRVPKVGAEE 152          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17310.1 vs. uniprot
Match: A0A0G4EZ16_VITBC (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EZ16_VITBC)

HSP 1 Score: 58.5 bits (140), Expect = 1.280e-7
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 0
Query:   63 LVRKTAVLAQIQVSDEEASRIVDVLAPRMEEFLGFVETMEEVAEASDGTFATLNCGS----DFLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDE 157
            LVRKTA LA + ++D+E S +V     + ++FL FV+ M+ +  +           S    D LRED+ + F N  A++ NMP EE  +LR+P+VGE E
Sbjct:   91 LVRKTAALAHLDLTDDEVSEMVH----QFKDFLRFVDDMKAIDTSQLDIDVMSPRASVPYRDPLREDTVQPFDNREAIVANMPEEEDGFLRIPRVGEIE 185          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17310.1 vs. uniprot
Match: R7QQW7_CHOCR (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQW7_CHOCR)

HSP 1 Score: 58.2 bits (139), Expect = 2.020e-7
Identity = 29/99 (29.29%), Postives = 59/99 (59.60%), Query Frame = 0
Query:   58 DITPDLVRKTAVLAQIQVSDEEASRIVDVLAPRMEEFLGFVETMEEVAEASDGTFATLNCGSDFLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGED 156
            + TP+ V++ A LAQ+ +S++E    +  + P +++ +GF  ++ E+        A+ +  ++ LR+D    FSNV A+M+ +P+ E  ++RVPK+  +
Sbjct:   98 EATPEEVKRIARLAQLNLSEDE----ITTMTPELQKVIGFFNSINEIDVEGFEPMASPSDANNVLRDDVPVMFSNVDAIMDEVPVAEKEFIRVPKISSE 192          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17310.1 vs. uniprot
Match: A0A7S2ZNI6_9RHOD (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNI6_9RHOD)

HSP 1 Score: 56.6 bits (135), Expect = 2.450e-7
Identity = 38/100 (38.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:   56 KVDITPDLVRKTAVLAQIQVSDEEASRIVDVLAPRMEEFLGFVETMEEVAEASDGTFATLNCGS--DFLREDSAERFSNVAAVMENMPIEEGNYLRVPKV 153
            KV+IT +LV KTA LA +Q+S+EE  RI     P +++ +GFVE +  V  +  G   TL      + LRED    F     ++E  P+ E +++RVPK+
Sbjct:   30 KVEITRELVEKTAKLASLQLSNEEVDRIT----PELQKIIGFVEQINAVDVS--GVEPTLRVEDLWNVLREDKPTIFPAQDEMLEEAPLLESDFIRVPKI 123          
BLAST of mRNA_E-siliculosus-1a_M_contig92.17310.1 vs. uniprot
Match: A0A6T6MT11_9RHOD (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6MT11_9RHOD)

HSP 1 Score: 56.2 bits (134), Expect = 3.430e-7
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query:   56 KVDITPDLVRKTAVLAQIQVSDEEASRIVDVLAPRMEEFLGFVETMEEVAEASDGTFATLNCGS--DFLREDSAERFSNVAAVMENMPIEEGNYLRVPKV 153
            +V+IT D+V KTA LA +Q+SDEE  RI     P ++  +GFVE +  V  +  G   TL      + LRED    F     ++E  P  E +Y+RVPK+
Sbjct:   30 RVEITRDVVEKTAKLASLQLSDEEVGRIT----PELQNIVGFVEQINAVDVS--GVEPTLRVEDLWNVLREDQPAIFPAQDEMLEEAPQLESDYVRVPKI 123          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17310.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FKR2_ECTSI7.500e-9191.77Glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amido... [more]
A0A6H5KRS3_9PHAE2.970e-3898.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJS8_9STRA1.680e-1547.52C subunit of glutamyl-tRNA and/or aspartyl-tRNA am... [more]
A0A0G4EZ16_VITBC1.280e-738.38Glutamyl-tRNA(Gln) amidotransferase subunit C, mit... [more]
R7QQW7_CHOCR2.020e-729.29Glutamyl-tRNA(Gln) amidotransferase subunit C, mit... [more]
A0A7S2ZNI6_9RHOD2.450e-738.00Glutamyl-tRNA(Gln) amidotransferase subunit C, mit... [more]
A0A6T6MT11_9RHOD3.430e-739.00Glutamyl-tRNA(Gln) amidotransferase subunit C, mit... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036113Glu-tRNAGln amidotransferase superfamily, subunit CGENE3D1.10.20.60coord: 55..153
e-value: 4.4E-10
score: 41.5
IPR036113Glu-tRNAGln amidotransferase superfamily, subunit CSUPERFAMILY141000Glu-tRNAGln amidotransferase C subunitcoord: 59..153
IPR003837Glu-tRNAGln amidotransferase C subunitPFAMPF02686Glu-tRNAGlncoord: 85..150
e-value: 3.0E-6
score: 27.4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..158
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.571
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:629532..634654 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17310.1mRNA_E-siliculosus-1a_M_contig92.17310.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig92 628799..634690 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig92.17310.1 ID=prot_E-siliculosus-1a_M_contig92.17310.1|Name=mRNA_E-siliculosus-1a_M_contig92.17310.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=159bp
MTARLCVVALTFASVADLSPCAAFLLVSRGRAPPGTGCKPAPSRNSCAAA
LPATTKVDITPDLVRKTAVLAQIQVSDEEASRIVDVLAPRMEEFLGFVET
MEEVAEASDGTFATLNCGSDFLREDSAERFSNVAAVMENMPIEEGNYLRV
PKVGEDEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003837Asp/Glu-ADT_csu
IPR036113Asp/Glu-ADT_sf_sub_c