mRNA_E-siliculosus-1a_M_contig92.17271.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17271.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17271.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17271.1 vs. uniprot
Match: A0A6H5L1X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1X1_9PHAE)

HSP 1 Score: 377 bits (967), Expect = 3.310e-123
Identity = 257/326 (78.83%), Postives = 266/326 (81.60%), Query Frame = 1 
Query:  253 NQVPFMEELMADFVDGNRGGGRSSEGGHPXXXXXXXX--GRFGEGPPGRMDSKRGGMGHHGGPRFTGREQXXXXXXXXXQRQGPRPSMFSVLVDWIRGDSSXXXXXXXXXXXXXXXXXXX-DDWDGSVTVGG---PSFGGDPVPEPLLLEKAVAREPMMMGERDSGIFHGPSHPHGPPPHPHGYGLLPGAPLERGPDGGRDHIRSRNRLPEDLENRGRAWLEDSLDGEDIGPVEGILAFFFFIGTCTLLLLPFFLLGRALRKLVRAGAXXXXXXXXXXXXDAPDGYQALPDDATAXXXXXXXXXXXXXXXXXVTGTPVNPPPSVHL 1212
            +QVPFME+LMADFV+GNRGGGRSSEGGHP          GR   GPPGRMD++RG MGHHGGPRFTG EQ         QRQGPRPSMFSVLVDWI GDSSXXXXXXXXXXXXXXXXXXX DDW    TV G     FGGD V E L L +A+AREPMMM ERDSG+FHGPSHP G PP PH Y  LPG P+E GPDGGRDHIRSRNRLPEDLE RGRAWLEDSLDGEDIGPVEGILAFFFFIGTCTLLLLPFFLLGRALRKLVRAGA XXXXXX     DAPDGYQALPDDAT  XXXXXXXXXXXXXXX VTGTPVNPPPSVHL
Sbjct:  239 DQVPFMEKLMADFVNGNRGGGRSSEGGHPGHPDHHHNPHGRVWGGPPGRMDTRRGDMGHHGGPRFTGGEQHPGPKHHGQQRQGPRPSMFSVLVDWIMGDSSXXXXXXXXXXXXXXXXXXXXDDWGVLGTVDGYVGVPFGGDAVSE-LHLGQAIAREPMMMAERDSGLFHGPSHPPGMPPPPHAYEPLPGTPMEGGPDGGRDHIRSRNRLPEDLETRGRAWLEDSLDGEDIGPVEGILAFFFFIGTCTLLLLPFFLLGRALRKLVRAGAGXXXXXXSG---DAPDGYQALPDDATTAXXXXXXXXXXXXXXX-VTGTPVNPPPSVHL 559
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BLAST of mRNA_E-siliculosus-1a_M_contig92.17271.1 vs. uniprot
Match: D7FKY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKY4_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 2.920e-113
Identity = 233/278 (83.81%), Postives = 238/278 (85.61%), Query Frame = 1 
Query:  394 MDSKRGGMGHHGGPRFTGREQXXXXXXXXXQRQGPRPSMFSVLVDWIRGDSSXXXXXXXXXXXXXXXXXXXDDWDGSV--TVGGPSFGGDPVPEPLLLEKAVAREPMMMGERDSGIFHGPSHPH--GPPPHPHGYGLLPGAPLERGPDGGRDHIRSRNRLPEDLENRGRAWLEDSLDGEDIGPVEGILAFFFFIGTCTLLLLPFFLLGRALRKLVRAGAXXXXXXXXXXXX-DAPDGYQALPDDATAXXXXXXXXXXXXXXXXXVTGTPVNPPPSVHL 1212
            MDSKRGGM HHGGPRFTG EQ         QRQGPRPSMFSVLVDWI GDSSXXXXXXXXXXXXXXXXXXX    G V  TV GP FGG PV EP L+EKA+ REPMM+G+RDSG+FH PSHPH  GP    HG G LPGAPLERGPDGGRDHIRSRNRLPEDLENRGRAWLEDSLDGEDIGPVEGILAFFFFIGTCTLLLLPFFLLGRALRKLVRAGAXXXXXXXXXXXX DAPDGYQALPDDATA    XXXXXXXXXXXX VTGTPVNPPPSVHL
Sbjct:    1 MDSKRGGMVHHGGPRFTGGEQHPGPRHHGQQRQGPRPSMFSVLVDWIMGDSSXXXXXXXXXXXXXXXXXXXXXXXGDVLITVDGPFFGGGPVTEPFLVEKAIVREPMMVGKRDSGLFHDPSHPHPHGPXXXXHGLGPLPGAPLERGPDGGRDHIRSRNRLPEDLENRGRAWLEDSLDGEDIGPVEGILAFFFFIGTCTLLLLPFFLLGRALRKLVRAGAXXXXXXXXXXXXXDAPDGYQALPDDATAAVPAXXXXXXXXXXXXVVTGTPVNPPPSVHL 278
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1X1_9PHAE3.310e-12378.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKY4_ECTSI2.920e-11383.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:240646..242048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1215
Model size1215
Exons2
Ec32 orthologEc-21_002370.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936459.5635877-CDS-E-siliculosus-1a_M_contig92:240645..2408981622936459.5635877-CDS-E-siliculosus-1a_M_contig92:240645..240898Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 240646..240898 +
1696251088.8751018-CDS-E-siliculosus-1a_M_contig92:240645..2408981696251088.8751018-CDS-E-siliculosus-1a_M_contig92:240645..240898Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 240646..240898 +
1622936459.5797808-CDS-E-siliculosus-1a_M_contig92:241086..2420481622936459.5797808-CDS-E-siliculosus-1a_M_contig92:241086..242048Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 241087..242048 +
1696251088.8849428-CDS-E-siliculosus-1a_M_contig92:241086..2420481696251088.8849428-CDS-E-siliculosus-1a_M_contig92:241086..242048Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 241087..242048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17271.1prot_E-siliculosus-1a_M_contig92.17271.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 240646..242048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17271.1

>prot_E-siliculosus-1a_M_contig92.17271.1 ID=prot_E-siliculosus-1a_M_contig92.17271.1|Name=mRNA_E-siliculosus-1a_M_contig92.17271.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=405bp
GRTCLPRQRGNSWPKTRGAPRTRSKRSRARLRGPRPTSRLRGPRPTSTTS
FSRRRRSPETAPRAAATRSQRRAWKSARRSDRPTNQVPFMEELMADFVDG
NRGGGRSSEGGHPGHPHHHHHGRFGEGPPGRMDSKRGGMGHHGGPRFTGR
EQHPGPRHHGQQRQGPRPSMFSVLVDWIRGDSSSSDSNDEESSSSSSSDS
SSDDWDGSVTVGGPSFGGDPVPEPLLLEKAVAREPMMMGERDSGIFHGPS
HPHGPPPHPHGYGLLPGAPLERGPDGGRDHIRSRNRLPEDLENRGRAWLE
DSLDGEDIGPVEGILAFFFFIGTCTLLLLPFFLLGRALRKLVRAGAGGGG
SGSGSGGGDAPDGYQALPDDATAAVAAAGRRGDDDDDNVVVTGTPVNPPP
SVHL*
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mRNA from alignment at E-siliculosus-1a_M_contig92:240646..242048+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17271.1 ID=mRNA_E-siliculosus-1a_M_contig92.17271.1|Name=mRNA_E-siliculosus-1a_M_contig92.17271.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1403bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:240646..242048+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGAAGAACTTGCTTGCCGCGACAGCGGGGGAATTCGTGGCCCAAAACAAG
AGGGGCGCCTCGAACACGAAGCAAAAGAAGTCGAGCCCGTTTAAGAGGAC
CGCGGCCAACAAGCCGTTTACGAGGACCGCGGCCAACAAGCACGACGTCG
TTCAGCAGGCGAAGAAGATCTCCGGAGACGGCTCCGCGGGCGGCGGCCAC
AAGAAGCCAGCGACGGGCTTGGAAAAGCGCGCGGCGCAGCGACAGGCCGA
CAAGTTCGATGCGGCGATGAGCCGGCAGGCCAAGCAGAGTATGTCCGACG
CCGCCATCCGGCGCGCCCGGCACACGGGAGACCACCACCCCGCCGCCGCC
GCCCTGCTGCCGCCGCCGCCGCCGCCGCGCCTGATCAGCGGAGAGATTGA
GTTCTTTGGGGAGGACGCGGTGATTTGGGTCGATGAAGAAGACCAAGTGC
CCTTCATGGAGGAGCTGATGGCGGACTTTGTGGACGGCAACCGCGGCGGC
GGCCGCAGCTCCGAGGGAGGGCACCCCGGGCACCCCCACCACCACCACCA
CGGGCGCTTCGGGGAAGGCCCTCCCGGCCGAATGGACTCCAAGCGCGGCG
GTATGGGACACCACGGCGGACCCCGTTTCACCGGCCGCGAGCAGCACCCC
GGGCCGAGGCACCACGGCCAGCAACGGCAGGGCCCAAGGCCGTCCATGTT
TTCGGTCCTGGTGGACTGGATAAGGGGCGATTCTTCGTCCTCTGACTCAA
ACGACGAGGAGTCCTCCTCCTCCTCCTCGTCTGATTCGTCCTCGGACGAC
TGGGACGGCTCGGTCACTGTTGGCGGCCCTTCCTTTGGCGGAGACCCTGT
ACCTGAGCCCCTTTTGTTGGAGAAGGCCGTCGCTCGGGAGCCCATGATGA
TGGGAGAGCGGGACAGTGGGATCTTCCACGGCCCCTCGCACCCCCACGGG
CCGCCCCCGCACCCCCACGGCTACGGGCTGCTCCCCGGAGCCCCCCTGGA
GCGCGGCCCGGACGGGGGGCGCGACCACATCCGTTCCCGCAACCGCCTCC
CCGAGGACCTGGAGAACCGGGGGCGGGCGTGGCTGGAGGATTCGCTGGAC
GGCGAGGACATTGGCCCCGTGGAAGGCATCCTGGCCTTCTTTTTCTTCAT
CGGCACCTGCACGCTCCTGCTGCTGCCGTTCTTCCTGCTGGGCCGCGCGC
TGAGGAAGCTGGTGCGGGCCGGCGCCGGTGGCGGCGGCAGCGGCAGCGGT
AGCGGCGGCGGCGATGCCCCGGATGGGTACCAGGCGCTGCCCGACGATGC
GACGGCAGCGGTGGCGGCGGCGGGCCGGCGCGGTGATGACGACGACGATA
ACGTTGTGGTTACCGGGACGCCGGTGAACCCGCCCCCGTCCGTTCACCTT
TGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:240646..242048+

>mRNA_E-siliculosus-1a_M_contig92.17271.1 ID=mRNA_E-siliculosus-1a_M_contig92.17271.1|Name=mRNA_E-siliculosus-1a_M_contig92.17271.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2430bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:240646..242048+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGAAGAACTTGCTTGCCGCGACAGCGGGGGAATTCGTGGCCCAAAACAAG
AGGGGCGCCTCGAACACGAAGCAAAAGAAGTCGAGCCCGTTTAAGAGGAC
CGCGGCCAACAAGCCGTTTACGAGGACCGCGGCCAACAAGCACGACGTCG
TTCAGCAGGCGAAGAAGATCTCCGGAGACGGCTCCGCGGGCGGCGGCCAC
AAGAAGCCAGCGACGGGCTTGGAAAAGCGCGCGGCGCAGCGACAGGCCGA
CAAGGAAGAACTTGCTTGCCGCGACAGCGGGGGAATTCGTGGCCCAAAAC
AAGAGGGGCGCCTCGAACACGAAGCAAAAGAAGTCGAGCCCGTTTAAGAG
GACCGCGGCCAACAAGCCGTTTACGAGGACCGCGGCCAACAAGCACGACG
TCGTTCAGCAGGCGAAGAAGATCTCCGGAGACGGCTCCGCGGGCGGCGGC
CACAAGAAGCCAGCGACGGGCTTGGAAAAGCGCGCGGCGCAGCGACAGGC
CGACAAACCAAGTGCCCTTCATGGAGGAGCTGATGGCGGACTTTGTGGAC
GGCAACCGCGGCGGCGGCCGCAGCTCCGAGGGAGGGCACCCCGGGCACCC
CCACCACCACCACCACGGGCGCTTCGGGGAAGGCCCTCCCGGCCGAATGG
ACTCCAAGCGCGGCGGTATGGGACACCACGGCGGACCCCGTTTCACCGGC
CGCGAGCAGCACCCCGGGCCGAGGCACCACGGCCAGCAACGGCAGGGCCC
AAGGCCGTCCATGTTTTCGGTCCTGGTGGACTGGATAAGGGGCGATTCTT
CGTCCTCTGACTCAAACGACGAGGAGTCCTCCTCCTCCTCCTCGTCTGAT
TCGTCCTCGGACGACTGGGACGGCTCGGTCACTGTTGGCGGCCCTTCCTT
TGGCGGAGACCCTGTACCTGAGCCCCTTTTGTTGGAGAAGGCCGTCGCTC
GGGAGCCCATGATGATGGGAGAGCGGGACAGTGGGATCTTCCACGGCCCC
TCGCACCCCCACGGGCCGCCCCCGCACCCCCACGGCTACGGGCTGCTCCC
CGGAGCCCCCCTGGAGCGCGGCCCGGACGGGGGGCGCGACCACATCCGTT
CCCGCAACCGCCTCCCCGAGGACCTGGAGAACCGGGGGCGGGCGTGGCTG
GAGGATTCGCTGGACGGCGAGGACATTGGCCCCGTGGAAGGCATCCTGGC
CTTCTTTTTCTTCATCGGCACCTGCACGCTCCTGCTGCTGCCGTTCTTCC
TGCTGGGCCGCGCGCTGAGGAAGCTGGTGCGGGCCGGCGCCGGTGGCGGC
GGCAGCGGCAGCGGTAGCGGCGGCGGCGATGCCCCGGATGGGTACCAGGC
GCTGCCCGACGATGCGACGGCAGCGGTGGCGGCGGCGGGCCGGCGCGGTG
ATGACGACGACGATAACGTTGTGGTTACCGGGACGCCGGTGAACCCGCCC
CCGTCCGTTCACCTTTGAACCAAGTGCCCTTCATGGAGGAGCTGATGGCG
GACTTTGTGGACGGCAACCGCGGCGGCGGCCGCAGCTCCGAGGGAGGGCA
CCCCGGGCACCCCCACCACCACCACCACGGGCGCTTCGGGGAAGGCCCTC
CCGGCCGAATGGACTCCAAGCGCGGCGGTATGGGACACCACGGCGGACCC
CGTTTCACCGGCCGCGAGCAGCACCCCGGGCCGAGGCACCACGGCCAGCA
ACGGCAGGGCCCAAGGCCGTCCATGTTTTCGGTCCTGGTGGACTGGATAA
GGGGCGATTCTTCGTCCTCTGACTCAAACGACGAGGAGTCCTCCTCCTCC
TCCTCGTCTGATTCGTCCTCGGACGACTGGGACGGCTCGGTCACTGTTGG
CGGCCCTTCCTTTGGCGGAGACCCTGTACCTGAGCCCCTTTTGTTGGAGA
AGGCCGTCGCTCGGGAGCCCATGATGATGGGAGAGCGGGACAGTGGGATC
TTCCACGGCCCCTCGCACCCCCACGGGCCGCCCCCGCACCCCCACGGCTA
CGGGCTGCTCCCCGGAGCCCCCCTGGAGCGCGGCCCGGACGGGGGGCGCG
ACCACATCCGTTCCCGCAACCGCCTCCCCGAGGACCTGGAGAACCGGGGG
CGGGCGTGGCTGGAGGATTCGCTGGACGGCGAGGACATTGGCCCCGTGGA
AGGCATCCTGGCCTTCTTTTTCTTCATCGGCACCTGCACGCTCCTGCTGC
TGCCGTTCTTCCTGCTGGGCCGCGCGCTGAGGAAGCTGGTGCGGGCCGGC
GCCGGTGGCGGCGGCAGCGGCAGCGGTAGCGGCGGCGGCGATGCCCCGGA
TGGGTACCAGGCGCTGCCCGACGATGCGACGGCAGCGGTGGCGGCGGCGG
GCCGGCGCGGTGATGACGACGACGATAACGTTGTGGTTACCGGGACGCCG
GTGAACCCGCCCCCGTCCGTTCACCTTTGA
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