prot_E-siliculosus-1a_M_contig92.17259.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig92.17259.1
Unique Name	prot_E-siliculosus-1a_M_contig92.17259.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	156

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17259.1 vs. uniprot
Match: D7FRA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA2_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 9.450e-83
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 0

Query:   29 QGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVSAFSAYGTYIYMLVPGYYACLAGYWVFRKLGGWVRSQQELNASEEPSAADLKREAKKERKAARAPRVRMR 155
            +GLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVS FSAYGTYIYMLVPGYYACLAGYWVFRKLGGWVRSQQELNASEEPSAADLKR+AKKERKAARAPRVRMR
Sbjct:   63 RGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVSTFSAYGTYIYMLVPGYYACLAGYWVFRKLGGWVRSQQELNASEEPSAADLKRQAKKERKAARAPRVRMR 189

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BLAST of mRNA_E-siliculosus-1a_M_contig92.17259.1 vs. uniprot
Match: B6AJ88_CRYMR (Uncharacterized protein n=2 Tax=Cryptosporidium TaxID=5806 RepID=B6AJ88_CRYMR)

HSP 1 Score: 53.5 bits (127), Expect = 4.430e-6
Identity = 29/81 (35.80%), Postives = 43/81 (53.09%), Query Frame = 0

Query:   22 HFSISRSQGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVSAFSAYGTYIYMLVPGY 102
            HF   R   L  +++   W   G++V + +Y V Y G++   K G G   Y D+F V     L+S FS Y  YIY+++PGY
Sbjct:   31 HFLFKRLYSLSYYKS---WDFIGISVIAIIYIVTYSGIVSRLKVGAGYSIYQDIFIVNTIVALLSIFSKYAWYIYLVIPGY 108

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig92.17259.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig92.17259.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FRA2_ECTSI	9.450e-83	97.64	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
B6AJ88_CRYMR	4.430e-6	35.80	Uncharacterized protein n=2 Tax=Cryptosporidium Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008506	SRP-independent targeting protein 2/TMEM208	PFAM	PF05620	TMEM208_SND2	coord: 72..146 e-value: 5.8E-7 score: 29.4
IPR008506	SRP-independent targeting protein 2/TMEM208	PANTHER	PTHR13505	FAMILY NOT NAMED	coord: 35..151
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..59
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 60..70
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..39
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 94..112
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 113..155
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 71..88
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 89..93
None	No IPR available	TMHMM	TMhelix		coord: 42..60
None	No IPR available	TMHMM	TMhelix		coord: 90..112

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig92	contig	E-siliculosus-1a_M_contig92:153527..154414 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig92.17259.1	mRNA_E-siliculosus-1a_M_contig92.17259.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig92 153054..155002 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig92.17259.1 ID=prot_E-siliculosus-1a_M_contig92.17259.1|Name=mRNA_E-siliculosus-1a_M_contig92.17259.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=156bp
MADCINTPMASCASYVFLPYAHFSISRSQGLWCFRTFGRWQVFGLAVTST
VYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVSAFSAYGTYIYMLVP
GYYACLAGYWVFRKLGGWVRSQQELNASEEPSAADLKREAKKERKAARAP
RVRMR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008506	SND2/TMEM208