mRNA_E-siliculosus-1a_M_contig92.17259.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig92.17259.1
Unique NamemRNA_E-siliculosus-1a_M_contig92.17259.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17259.1 vs. uniprot
Match: D7FRA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA2_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 1.350e-77
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 3 
Query:  558 QGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVSAFSAYGTYIYMLVPGYYACLAGYWVFRKLGGWVRSQQELNASEEPSAADLKREAKKERKAARAPRVRMR 938
            +GLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVS FSAYGTYIYMLVPGYYACLAGYWVFRKLGGWVRSQQELNASEEPSAADLKR+AKKERKAARAPRVRMR
Sbjct:   63 RGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVSTFSAYGTYIYMLVPGYYACLAGYWVFRKLGGWVRSQQELNASEEPSAADLKRQAKKERKAARAPRVRMR 189
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig92.17259.1 vs. uniprot
Match: B6AJ88_CRYMR (Uncharacterized protein n=2 Tax=Cryptosporidium TaxID=5806 RepID=B6AJ88_CRYMR)

HSP 1 Score: 53.5 bits (127), Expect = 5.810e-5
Identity = 29/81 (35.80%), Postives = 43/81 (53.09%), Query Frame = 3 
Query:  537 HFSISRSQGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVSAFSAYGTYIYMLVPGY 779
            HF   R   L  +++   W   G++V + +Y V Y G++   K G G   Y D+F V     L+S FS Y  YIY+++PGY
Sbjct:   31 HFLFKRLYSLSYYKS---WDFIGISVIAIIYIVTYSGIVSRLKVGAGYSIYQDIFIVNTIVALLSIFSKYAWYIYLVIPGY 108
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig92.17259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRA2_ECTSI1.350e-7797.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B6AJ88_CRYMR5.810e-535.80Uncharacterized protein n=2 Tax=Cryptosporidium Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig92contigE-siliculosus-1a_M_contig92:153054..155002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size468
Model size1529
Exons2
Ec32 orthologEc-26_002400.1
Ec32 ortholog descriptionProtein of unknown function DUF788, TMEM208
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig92.17259.1prot_E-siliculosus-1a_M_contig92.17259.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig92 153527..154414 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936457.356406-UTR-E-siliculosus-1a_M_contig92:153053..1535261622936457.356406-UTR-E-siliculosus-1a_M_contig92:153053..153526Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 153054..153526 +
1696251087.6933706-UTR-E-siliculosus-1a_M_contig92:153053..1535261696251087.6933706-UTR-E-siliculosus-1a_M_contig92:153053..153526Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 153054..153526 +
1622936457.4342952-UTR-E-siliculosus-1a_M_contig92:154414..1550021622936457.4342952-UTR-E-siliculosus-1a_M_contig92:154414..155002Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 154415..155002 +
1696251087.7256489-UTR-E-siliculosus-1a_M_contig92:154414..1550021696251087.7256489-UTR-E-siliculosus-1a_M_contig92:154414..155002Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig92 154415..155002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936457.3721166-CDS-E-siliculosus-1a_M_contig92:153526..1538201622936457.3721166-CDS-E-siliculosus-1a_M_contig92:153526..153820Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 153527..153820 +
1696251087.7026129-CDS-E-siliculosus-1a_M_contig92:153526..1538201696251087.7026129-CDS-E-siliculosus-1a_M_contig92:153526..153820Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 153527..153820 +
1622936457.3943038-CDS-E-siliculosus-1a_M_contig92:154240..1544141622936457.3943038-CDS-E-siliculosus-1a_M_contig92:154240..154414Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 154241..154414 +
1696251087.7139034-CDS-E-siliculosus-1a_M_contig92:154240..1544141696251087.7139034-CDS-E-siliculosus-1a_M_contig92:154240..154414Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig92 154241..154414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig92.17259.1

>prot_E-siliculosus-1a_M_contig92.17259.1 ID=prot_E-siliculosus-1a_M_contig92.17259.1|Name=mRNA_E-siliculosus-1a_M_contig92.17259.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=156bp
MADCINTPMASCASYVFLPYAHFSISRSQGLWCFRTFGRWQVFGLAVTST
VYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVSAFSAYGTYIYMLVP
GYYACLAGYWVFRKLGGWVRSQQELNASEEPSAADLKREAKKERKAARAP
RVRMR*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig92:153054..155002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig92.17259.1 ID=mRNA_E-siliculosus-1a_M_contig92.17259.1|Name=mRNA_E-siliculosus-1a_M_contig92.17259.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1949bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:153054..155002+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCGAAGGCCAGGGAAGATGCGGCCAACCTATACTACCCTATCATCTTTGG
CGTAAACCTCATCTACGTGTTGTATCGAGGTAGGGGTCTGCGGGGGTGGT
AATCGCAGACTGGTTTGTGTGGGAGATGATGTGAATGTTTCGATGCTACT
GCTGTAGCAGCGCTTCCGTTTCACCTGTCGCCCATTACCTCGATAGATCA
CCAGCTCGATCTCGGGCTTCAAGACTTATTTTGACAAAGTGCGACCAAGG
GATTCAGGTGAGGGGAGCTCCAGCTGCTATGATTGACCATCGTTCTCTCA
AACCACGGCTTGAATAACATGCGATGGAAGCCGGGAGTGTGGCCTCGATT
TATCACGGCAAACAAATTTATCCCGTCGCGAGGATGCGCCAGAAGAGATT
CACGGGACCCAAAGGGGTTAAGCGAATGTGCGGTACTTACAGGGTGACGT
GGCCTGCTGGGGTGGTTTGATGAATGGCAGATTGCATCAACACACCGATG
GCAAGTTGTGCGTCTTACGTTTTTCTCCCGTACGCTCATTTCTCGATATC
ACGCTCGCAAGGCCTGTGGTGCTTTCGAACGTTCGGCCGGTGGCAAGTGT
TTGGGCTTGCGGTGACCTCAACGGTGTACTACGTCTGCTATCACGGAATG
CTAGAGGCCGCGAAAAGTGGCGTGGGTGGAGGAGCGTATTTCGACGTTTT
CGCAGTGTGTGTGGCCGGCCAACTCGTGTCAGCCTTCAGTGCGTACGGGA
CCTACATATACATGTTGGTGAGTTGCGTGTGAAGGCATCTCCGTGAACTT
TTACAGCAACACGTCGTGAGTTGTTTGTACGGGTACAATTGTACCTGGTG
TGGTTTTTGTACTAGGGGGTGGGTAGGTTGCCCAGTTGCCGTTCTTGTTC
TGGCTGTATGTGTAGGTGTTGCTGTTTGTGCCAAGAGTCACTCAATACAG
TCGAGTTGGCAACAGCACACAACTGACCTCTTCTACATGGACTTGATTTT
CTTCATTCCAGGTGCCAGGGTAGGGTGGGTAGTGCGTGTGAAAAGCGCTT
CGGTTGCCCAGTTGCCGTTCTTGTTCTGGCTGTATGTGTAGGTGTTGCTG
TTTGTGCCAAGAGTCACTCAATACAGTCGAGTTGGCAACAGCACACAACT
GACCTCTTCTACATGGACTTGATTTTCTTCATTCCAGGTGCCAGGGTATT
ACGCGTGCCTAGCAGGGTATTGGGTATTCCGAAAGCTGGGGGGATGGGTG
CGCTCTCAACAAGAACTGAATGCGAGCGAGGAGCCCTCGGCAGCAGATCT
TAAGCGTGAGGCGAAGAAGGAGAGGAAGGCCGCCAGAGCTCCAAGAGTCA
GGATGCGGTAGCCAGCCACTTCAAGCCGGAGAACCAACGTCAGCTGCAAC
CGACCACGTCTACAAGGCTTTCGCAGCGCACGTGAACCGGTCCGATTTCT
TGGTGTTGGCAGAGGGCTCTTCCTGTGACCTTGCAACAATCCGCCCTTGT
TCGGGAAGGGTAGTCATCACATGCATTTACGGAGATGATTTAGAGGAAAA
CGTGGGCACTTACACGTGTAATCACCCCCCGCAAAGAGGGCGCCTCAAGC
CGCGAGGGGCCCGCGGCTTCTACCTCTGTATGGCAATCAGCGACTAAAGG
GTTTATATATAGCGTCGGAGATGCGGTCGGGAGAGCAGGTTGTGCCAGAG
CGTATGCAAGTTGTGGTTCTGTACTGAGAAGTGATTTTATATAATGCGTT
CGATTTATTCAAGACACTCACGGGAGCTTTTGGACCATTTCCGCCTCTCC
CGCAGCGTCTCTCTACAATATATTGCTGTCATAGGCAAGTCACACGCGAG
TTTGTTGCAACCCCCACAGAGGAGCAACTTGTTCATCTTCCCGACGTTTG
GCGCAAGGCTAGTTCACCATGGGGTGCACAAAAAATACCAGAATGAACC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig92:153054..155002+

>mRNA_E-siliculosus-1a_M_contig92.17259.1 ID=mRNA_E-siliculosus-1a_M_contig92.17259.1|Name=mRNA_E-siliculosus-1a_M_contig92.17259.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=936bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig92:153054..155002+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCAGATTGCATCAACACACCGATGGCAAGTTGTGCGTCTTACGTTTT
TCTCCCGTACGCTCATTTCTCGATATCACGCTCGCAAGGCCTGTGGTGCT
TTCGAACGTTCGGCCGGTGGCAAGTGTTTGGGCTTGCGGTGACCTCAACG
GTGTACTACGTCTGCTATCACGGAATGCTAGAGGCCGCGAAAAGTGGCGT
GGGTGGAGGAGCGTATTTCGACGTTTTCGCAGTGTGTGTGGCCGGCCAAC
TCGTGTCAGCCTTCAGTGCGTACGGGACCTACATATACATGTTGATGGCA
GATTGCATCAACACACCGATGGCAAGTTGTGCGTCTTACGTTTTTCTCCC
GTACGCTCATTTCTCGATATCACGCTCGCAAGGCCTGTGGTGCTTTCGAA
CGTTCGGCCGGTGGCAAGTGTTTGGGCTTGCGGTGACCTCAACGGTGTAC
TACGTCTGCTATCACGGAATGCTAGAGGCCGCGAAAAGTGGCGTGGGTGG
AGGAGCGTATTTCGACGTTTTCGCAGTGTGTGTGGCCGGCCAACTCGTGT
CAGCCTTCAGTGCGTACGGGACCTACATATACATGTTGGTGCCAGGGTAT
TACGCGTGCCTAGCAGGGTATTGGGTATTCCGAAAGCTGGGGGGATGGGT
GCGCTCTCAACAAGAACTGAATGCGAGCGAGGAGCCCTCGGCAGCAGATC
TTAAGCGTGAGGCGAAGAAGGAGAGGAAGGCCGCCAGAGCTCCAAGAGTC
AGGATGCGGTAGGTGCCAGGGTATTACGCGTGCCTAGCAGGGTATTGGGT
ATTCCGAAAGCTGGGGGGATGGGTGCGCTCTCAACAAGAACTGAATGCGA
GCGAGGAGCCCTCGGCAGCAGATCTTAAGCGTGAGGCGAAGAAGGAGAGG
AAGGCCGCCAGAGCTCCAAGAGTCAGGATGCGGTAG
back to top