mRNA_E-siliculosus-1a_M_contig90.17127.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig90.17127.1
Unique NamemRNA_E-siliculosus-1a_M_contig90.17127.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17127.1 vs. uniprot
Match: D8LKJ1_ECTSI (Arf2A, ARF family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ1_ECTSI)

HSP 1 Score: 374 bits (959), Expect = 1.920e-124
Identity = 183/186 (98.39%), Postives = 183/186 (98.39%), Query Frame = 2 
Query:  149 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDDCQTVLIFLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGERVYDGLDWLRGALNKK 706
            MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMD CQTVLI LNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGE VYDGLDWLRGALNKK
Sbjct:    1 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDGCQTVLILLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGEGVYDGLDWLRGALNKK 186
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17127.1 vs. uniprot
Match: D8LKJ9_ECTSI (Arf2B, ARF family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKJ9_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 5.750e-87
Identity = 128/186 (68.82%), Postives = 156/186 (83.87%), Query Frame = 2 
Query:  149 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDDCQTVLIFLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGERVYDGLDWLRGALNKK 706
            MG +++RL +IL  L+EKRLLLLGLD AGKTSLLY LHLNE V T+PT+GFN+E+VEYN M+MTIWD+GGQ KLR LW +YF++TDALIF+VDS+D  RIEEARDE+FH+L+DPNMD CQTVLI LNKQD+PGA+ P  +  ++GL+ AG NPL +RNWYMQ CCA+TGE V+ GLDWL  AL KK
Sbjct:    1 MGHVVSRLVHILGTLKEKRLLLLGLDNAGKTSLLYNLHLNEAVGTVPTVGFNMEQVEYNNMVMTIWDVGGQAKLRSLWRYYFVDTDALIFMVDSSDENRIEEARDEMFHVLRDPNMDGCQTVLIMLNKQDVPGAVGPGIVIDRMGLNSAGDNPLRERNWYMQSCCALTGEGVFYGLDWLCEALKKK 186
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17127.1 vs. uniprot
Match: A1XKU1_SUBDO (ADP-ribosylation factor n=1 Tax=Suberites domuncula TaxID=55567 RepID=A1XKU1_SUBDO)

HSP 1 Score: 213 bits (542), Expect = 2.790e-62
Identity = 106/185 (57.30%), Postives = 132/185 (71.35%), Query Frame = 2 
Query:  149 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDDCQTVLIFLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGERVYDGLDWLRGALNK 703
            MG  I+ L N L G +  R+L++GLDAAGKT++LY+L L E+VTTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HYF+NT  LIFVVDSND ERI EA+DEL  +LQ+  + D   VL+F NKQDLP A+S S ++ KLGL       L  RNWY+Q  CA  G  +Y+GLDWL   L+K
Sbjct:    1 MGLTISNLFNSLFGNKNMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFVNTQGLIFVVDSNDRERINEAKDELARMLQEDELRDA-VVLVFANKQDLPNAMSVSEIKDKLGLHN-----LTSRNWYIQTACATQGTGLYEGLDWLSQQLSK 179
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17127.1 vs. uniprot
Match: M4BN95_HYAAE (ADP-ribosylation factor n=8 Tax=Oomycota TaxID=4762 RepID=M4BN95_HYAAE)

HSP 1 Score: 213 bits (542), Expect = 2.880e-62
Identity = 103/186 (55.38%), Postives = 132/186 (70.97%), Query Frame = 2 
Query:  149 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDDCQTVLIFLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGERVYDGLDWLRGALNKK 706
            MG   +R+   L G +E R+L++GLDAAGKT++LY+L L EVVTTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HY+ NT  LIFVVDSND +R++ ARDEL  +L +  + D   +L+F NKQDLP A+S + M  KLGL G     L  R W++Q CCA TG+ +Y+GLDWL   L KK
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRD-SVLLVFANKQDLPNAMSAAEMTDKLGLHG-----LRHRQWFIQACCATTGDGLYEGLDWLSATLQKK 180
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17127.1 vs. uniprot
Match: A0A1R3GES4_COCAP (ADP-ribosylation factor n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3GES4_COCAP)

HSP 1 Score: 213 bits (543), Expect = 3.580e-62
Identity = 104/186 (55.91%), Postives = 134/186 (72.04%), Query Frame = 2 
Query:  149 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDDCQTVLIFLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGERVYDGLDWLRGALNKK 706
            MG  I+RL  +L   +E R+L++GLDAAGKT++LY+L L E+VTTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HYF NT  LIFVVDSND ERI EARDEL  +L +  + D  T+L+F NKQDLP A++ S +  KLGL     N L +R WY+Q  CA +G+ +Y+GLDWL   ++ K
Sbjct:    1 MGMTISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERISEARDELHRMLSEDELRDA-TLLVFANKQDLPNALTVSEITDKLGL-----NSLRQRRWYIQATCATSGQGLYEGLDWLSSNISTK 180
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17127.1 vs. uniprot
Match: K3WYT4_GLOUD (ADP-ribosylation factor n=30 Tax=Stramenopiles TaxID=33634 RepID=K3WYT4_GLOUD)

HSP 1 Score: 213 bits (541), Expect = 4.040e-62
Identity = 103/186 (55.38%), Postives = 132/186 (70.97%), Query Frame = 2 
Query:  149 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDDCQTVLIFLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGERVYDGLDWLRGALNKK 706
            MG   +R+   L G +E R+L++GLDAAGKT++LY+L L EVVTTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HY+ NT  LIFVVDSND +R++ ARDEL  +L +  + D   +L+F NKQDLP A+S + M  KLGL G     L  R W++Q CCA TG+ +Y+GLDWL   L KK
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRD-SILLVFANKQDLPNAMSAAEMTDKLGLHG-----LRHRQWFIQACCATTGDGLYEGLDWLSATLQKK 180
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17127.1 vs. uniprot
Match: A0A8B8M4Y7_ABRPR (ADP-ribosylation factor 2-like isoform X2 n=2 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8M4Y7_ABRPR)

HSP 1 Score: 213 bits (542), Expect = 8.420e-62
Identity = 104/189 (55.03%), Postives = 134/189 (70.90%), Query Frame = 2 
Query:  137 PTASMGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDDCQTVLIFLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGERVYDGLDWLRGALNK 703
            P A+MG  ++RL  +    +E R+L++GLDAAGKT++LY+L L E+VTTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HYF NT  LIFVVDSND ERI EARDEL  +L +  + D   +L+F NKQDLP A+S S +  KLGL     + L  R WY+Q  CA +G+ +Y+GLDWL   +NK
Sbjct:   30 PEATMGLTVSRLMRLFYAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERISEARDELHRMLSEDELRDA-ILLVFANKQDLPNALSVSEITDKLGL-----HSLRLRRWYIQATCATSGQGLYEGLDWLSSHINK 212
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17127.1 vs. uniprot
Match: UPI001929E330 (ADP-ribosylation factor 1-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E330)

HSP 1 Score: 211 bits (538), Expect = 1.110e-61
Identity = 103/185 (55.68%), Postives = 133/185 (71.89%), Query Frame = 2 
Query:  149 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDDCQTVLIFLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGERVYDGLDWLRGALNK 703
            MG  I+ L  +L   +E R+L++GLDAAGKT++LY+L L EV+TTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HYF NT  LIFV+DSND ERI EAR+EL  IL +  +    T+L+F NKQDLP A+  S +  KLGL     + L +RNWY+Q CCA +GE +Y+GLDWL   ++K
Sbjct:    1 MGMTISTLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEVITTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDRERIAEARNELHRILSEDELRGA-TLLVFANKQDLPNAMRVSEITDKLGL-----HSLRQRNWYIQSCCAASGEGLYEGLDWLSSNISK 179
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17127.1 vs. uniprot
Match: A0A3S3Q2S8_9MAGN (ADP-ribosylation factor n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3Q2S8_9MAGN)

HSP 1 Score: 211 bits (538), Expect = 1.150e-61
Identity = 104/186 (55.91%), Postives = 133/186 (71.51%), Query Frame = 2 
Query:  149 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDDCQTVLIFLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGERVYDGLDWLRGALNKK 706
            MG  I+RL   L   +E R+L++GLDAAGKT++LY+L L E+VTTIPTIGFNVE V+Y  +  T+WD+GGQ K+RPLW HYF NT  LIFV+DSND ERI EARDEL  +L +  + D  T+L+F NKQDLP A+S S +  KLGL     + L +R WY+Q  CA TGE +Y+GLDWL   ++ K
Sbjct:    1 MGMTISRLIRQLFSRKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVDYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDKERISEARDELHRMLSEEELRDA-TLLVFANKQDLPNAMSVSEITDKLGL-----HSLRQRRWYIQSACATTGEGLYEGLDWLSNNISTK 180
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig90.17127.1 vs. uniprot
Match: A0A4P1QR29_LUPAN (ADP-ribosylation factor n=2 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A4P1QR29_LUPAN)

HSP 1 Score: 211 bits (537), Expect = 1.610e-61
Identity = 103/188 (54.79%), Postives = 134/188 (71.28%), Query Frame = 2 
Query:  149 MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIGFNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERIEEARDELFHILQDPNMDDCQTVLIFLNKQDLPGAISPSAMRSKLGLDGAGRNPLMKRNWYMQGCCAVTGERVYDGLDWLRGALNKK*K 712
            MG  I+RL  +L   +E R+L++GLDAAGKT++LY+L L E+VTTIPTIGFNVE VEY  +  T+WD+GGQ K+RPLW HYF NT  LI+VVDSND ERI EARDEL  +L +  + D  T+L+F NKQDLP A+S + +  KLGL     N   +R WY+Q  CA +G+ +Y+GLDWL   ++ K K
Sbjct:    1 MGLTISRLFRLLYSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIYVVDSNDRERISEARDELHRMLSEDELHDA-TLLVFANKQDLPNALSVAEITDKLGL-----NSFRQRRWYIQATCATSGQGLYEGLDWLSSNISSKAK 182
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig90.17127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKJ1_ECTSI1.920e-12498.39Arf2A, ARF family GTPase n=1 Tax=Ectocarpus silicu... [more]
D8LKJ9_ECTSI5.750e-8768.82Arf2B, ARF family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A1XKU1_SUBDO2.790e-6257.30ADP-ribosylation factor n=1 Tax=Suberites domuncul... [more]
M4BN95_HYAAE2.880e-6255.38ADP-ribosylation factor n=8 Tax=Oomycota TaxID=476... [more]
A0A1R3GES4_COCAP3.580e-6255.91ADP-ribosylation factor n=1 Tax=Corchorus capsular... [more]
K3WYT4_GLOUD4.040e-6255.38ADP-ribosylation factor n=30 Tax=Stramenopiles Tax... [more]
A0A8B8M4Y7_ABRPR8.420e-6255.03ADP-ribosylation factor 2-like isoform X2 n=2 Tax=... [more]
UPI001929E3301.110e-6155.68ADP-ribosylation factor 1-like n=1 Tax=Dioscorea c... [more]
A0A3S3Q2S8_9MAGN1.150e-6155.91ADP-ribosylation factor n=1 Tax=Cinnamomum micrant... [more]
A0A4P1QR29_LUPAN1.610e-6154.79ADP-ribosylation factor n=2 Tax=50 kb inversion cl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig90contigE-siliculosus-1a_M_contig90:218582..222410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size561
Model size1839
Exons6
Ec32 orthologEc-16_003150.1
Ec32 ortholog descriptionArf2A, ARF family GTPase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsCOG1100@1,KOG0070@2759
EggNOG free text desc.GTP binding
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
KEGG koko:K07937,ko:K07977
Seed eggNOG ortholog2880.D8LKJ1
Seed ortholog evalue2.8e-102
Seed ortholog score377.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig90.17127.1prot_E-siliculosus-1a_M_contig90.17127.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig90 219712..222262 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936424.206457-UTR-E-siliculosus-1a_M_contig90:218581..2197111622936424.206457-UTR-E-siliculosus-1a_M_contig90:218581..219711Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 218582..219711 -
1696251071.9819827-UTR-E-siliculosus-1a_M_contig90:218581..2197111696251071.9819827-UTR-E-siliculosus-1a_M_contig90:218581..219711Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 218582..219711 -
1622936424.3886323-UTR-E-siliculosus-1a_M_contig90:222262..2224101622936424.3886323-UTR-E-siliculosus-1a_M_contig90:222262..222410Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 222263..222410 -
1696251072.064831-UTR-E-siliculosus-1a_M_contig90:222262..2224101696251072.064831-UTR-E-siliculosus-1a_M_contig90:222262..222410Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig90 222263..222410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936424.2263765-CDS-E-siliculosus-1a_M_contig90:219711..2197861622936424.2263765-CDS-E-siliculosus-1a_M_contig90:219711..219786Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 219712..219786 -
1696251071.9962852-CDS-E-siliculosus-1a_M_contig90:219711..2197861696251071.9962852-CDS-E-siliculosus-1a_M_contig90:219711..219786Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 219712..219786 -
1622936424.242627-CDS-E-siliculosus-1a_M_contig90:220304..2204031622936424.242627-CDS-E-siliculosus-1a_M_contig90:220304..220403Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 220305..220403 -
1696251072.008939-CDS-E-siliculosus-1a_M_contig90:220304..2204031696251072.008939-CDS-E-siliculosus-1a_M_contig90:220304..220403Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 220305..220403 -
1622936424.255881-CDS-E-siliculosus-1a_M_contig90:220712..2209021622936424.255881-CDS-E-siliculosus-1a_M_contig90:220712..220902Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 220713..220902 -
1696251072.022039-CDS-E-siliculosus-1a_M_contig90:220712..2209021696251072.022039-CDS-E-siliculosus-1a_M_contig90:220712..220902Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 220713..220902 -
1622936424.2765431-CDS-E-siliculosus-1a_M_contig90:221255..2213501622936424.2765431-CDS-E-siliculosus-1a_M_contig90:221255..221350Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 221256..221350 -
1696251072.0321958-CDS-E-siliculosus-1a_M_contig90:221255..2213501696251072.0321958-CDS-E-siliculosus-1a_M_contig90:221255..221350Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 221256..221350 -
1622936424.2966769-CDS-E-siliculosus-1a_M_contig90:221782..2218361622936424.2966769-CDS-E-siliculosus-1a_M_contig90:221782..221836Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 221783..221836 -
1696251072.0419145-CDS-E-siliculosus-1a_M_contig90:221782..2218361696251072.0419145-CDS-E-siliculosus-1a_M_contig90:221782..221836Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 221783..221836 -
1622936424.3727415-CDS-E-siliculosus-1a_M_contig90:222214..2222621622936424.3727415-CDS-E-siliculosus-1a_M_contig90:222214..222262Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 222215..222262 -
1696251072.054378-CDS-E-siliculosus-1a_M_contig90:222214..2222621696251072.054378-CDS-E-siliculosus-1a_M_contig90:222214..222262Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig90 222215..222262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig90.17127.1

>prot_E-siliculosus-1a_M_contig90.17127.1 ID=prot_E-siliculosus-1a_M_contig90.17127.1|Name=mRNA_E-siliculosus-1a_M_contig90.17127.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=187bp
MGQIIARLANILNGLQEKRLLLLGLDAAGKTSLLYRLHLNEVVTTIPTIG
FNVERVEYNRMMMTIWDIGGQTKLRPLWHHYFINTDALIFVVDSNDHERI
EEARDELFHILQDPNMDDCQTVLIFLNKQDLPGAISPSAMRSKLGLDGAG
RNPLMKRNWYMQGCCAVTGERVYDGLDWLRGALNKK*
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mRNA from alignment at E-siliculosus-1a_M_contig90:218582..222410-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig90.17127.1 ID=mRNA_E-siliculosus-1a_M_contig90.17127.1|Name=mRNA_E-siliculosus-1a_M_contig90.17127.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3829bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:218582..222410- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TACCGCAACATCCCCAGCACACCCACAAGCTACACACCAGCATCGGAACA
CTTCAACAGCTGCCGTGGTCTGCCGCGCACGTTCGCCACACTACACAGCA
GTAGCGAATCCATCCCCTTCTTGACATTCGTCTTCGCCAACAGCAAGCAT
GGGGCAGATCATCGCTCGTCTCGCCAACATCCTCAACGGCCTCCAGGTGT
GTACAGATATGCATAGAGTCAACAGAGAGTGAGTGGTTCAACAACCACCC
TCCTGAAAATAGATAAAGCCGACGTAGTTAGTGCTCGAACGGCGGTTGAA
TTATCCTCGAGCAGTGTCTCTGTCCCCGCGAGCTGCCGGTCTATGCCTTG
TGCGCTTGTGCTCTGTTGTCAACAAACAACAGATTGCATGAACTTGTACT
ACTGTAGGCGAGAATCGAAAGAAAAAACGGGGTAGCAGCTTGGGGATGCA
TGTACACCACATGATGAGTAGGATAATGTTCAAGAGTCCGACCGACTTTC
CTTCTAATCTATTTTGAGGTGATACATCGTCTCGCACATCTGTGTTTGTC
TTGTTTGTCATGATTTTTCTCCAGGAAAAGCGCCTTCTGCTGCTGGGTTT
GGACGCTGCCGGCAAGACCTCTCTTTTGGTGAGTTTTTCCAATCTTTTAG
CAGACTAGGGAGGAGACGAGGGGCGCTATTGCAGTAGTGAAGAAATACGG
GGAATGTCTGGATGGTATTGTTGGGCATGAAATGAAATAGTCGATTGAAT
ACTCACACAACAGCATCGAGCCAAAATAGATGGGCCGCGGTTTGGGTCCG
CATAGTTCCTGTCCCTTCTACGGTCATACCGCGTGATAGTCTGTCCCTTT
GGTCTCCCAGAACTCATCAGCTGCCGGGGCTCACCCCCAGGGCGCATGGT
TTGGTATTTGTCCTCTTGAAAAACGTGTTCGACACAATCAACAGAACTAG
AAACCGTGTATGTGCTCGTTTTCTGACCTTGTTTTGTGGAGGCGTGCCAC
TGCCACCTGGAAAAATAACAATCGATATCATTTTGCTGTGAATGTACTCG
ACGTCAACAGTACAGGCTTCACTTGAATGAGGTGGTGACTACCATCCCCA
CCATTGGCTTCAACGTCGAACGGGTCGAGTACAACAGGATGATGATGACT
ATCTGGTGAGGGGTGATGTAGCGGCAAAACATTCAGCACTGTGTATTCCT
GCGGTCCGTACTGACATTGCCGTAGTAGGAGTGCGGCACAGTATGGTCTT
ACCTTTACCCCCCCCCCCCATCCATTTTTCACCCTAAAATATGTCGTAGA
AATGGCGGAGTGGAGCAAGGTTGGTGCTAGGAAATTGTCTGAACGTTTTC
GCAAAGCAGTTCGGGCCGTTATAAACTTATTGCTTCCAGATTCGGCGTGC
TTTTTTTCGATATTCTTGTTCTTGCAATAAGCCCAACAACAATTGTCCGT
GTGTCACCCCTGACCCTCCCAATTTCTCTTTCCCTCATTCTGTTGAATAT
TCTGCCAGGGATATCGGGGGTCAAACCAAGCTACGGCCGCTCTGGCACCA
CTATTTCATCAACACCGACGCCTTGATCTTCGTCGTGGATTCTAACGACC
ATGAGCGCATCGAGGAAGCGCGGGACGAGCTGTTCCACATACTGCAGGAC
CCTAACATGGATGACTGCCAAACTGTCCTCATTTTCCTTAACAAGCAGGT
AATTGCCATTGCGGTGAAAGCGTTGGTTGTGGGTTCTATTCTAGTTTGGG
CTACACTTGGGGAGGAGGAGATCCTAGCTTTGGGCGGTATATTTACTCGT
GCACATCGGATCGGTTCTCTCACAAGTTGATGGCATTCAAATGCCAGATG
CTCGTACTCCTTAGAAAGCGCTCATTTGCACAAAATTGAAGGAAGTTGAT
TTTTCTGACACCAAAAAGCAGCACTCCCGTTATTTTCCTTGCTACAAGAC
CAATCGATCAACCTGCCCTCACTCTCCTCCCCCGTGCCTCTTCCGTCTTC
CTCTCAGGACCTTCCCGGTGCGATCAGCCCTAGCGCCATGCGCAGCAAGC
TCGGCTTGGACGGTGCGGGACGCAATCCGCTCATGAAGCGCAATTGGTAC
ATGCAGGTAAGCCTACCCAGGGCACACTAAAACTTAGATGCGTTTCTGCG
CAAGCAATAGATGAACGTTTCTGTGTCGTTTATTCGGTAACCTTCTCGAA
CCCCCTGTACAAAGACATTGTGTTTTGTACTCCTGTTCGATTCAACTCTG
GGAGATGATGTAGAGCTCGGTATGCACCTACCTGTAGAACGGCCACTGTC
CTGATTTCTTGACAAGACAGCAAGTAAGCTGCTGAAAGTGGCTTGGAAAC
ACATTTCCCTTCTACGTACAGCCTAGTCTCACCCGTTGCCCCATCAATTC
GTCCTGTTTGGACACGCAGTTGAACGAGGCACATCCCAAAGATAATATTT
CTGCGAGCGGTAGAGAAAACATGCGGATGAGTGCGCTGAGGGGGTGATCA
AATCGTCCTAGAAAATAGCTGCCCCCAGACGAGAGGCACCGACGTATATG
GCAGTGTATCACTATGCTGAGCAATACTCCCCGCATCTCGACCGCTTCCT
TTCTGTGCGTGCCGGAAAATTCAGGGCTGCTGTGCGGTCACGGGCGAGCG
AGTATACGATGGTCTCGACTGGCTGAGGGGAGCGTTGAACAAGAAATGAA
AGTCGACTCACGCGGACGGCCTTTACAGCATGTGATGACAGCAATTTGTT
TGACTCTCGAAAGCGTATGCGGTAGACCATGGAATGACAGCGCTATTCTC
TCGGCCTACCAATGTTTTTGTATCATGTTTCTATTTTTCGGGTAAGTACG
AAACTGCAGGTAGCGACCAAGGATAGCTATTCTCGGCCTATCAGTACCTG
TTCTGTGTCATGTTTTCTATTTTTCGAAATTGCAGTTACGTACGTAGCAG
CCCAAGTGCTTCGTCCCTCTGCCATTAAAATTCATTGTGTTTGGGATCAA
GGATGTTTATGTGCAGTAATCGTGCTTGACACAACGATGTTGTAGCTAAC
GTGTTTCAGAGGGGGGCCAATCAGGAAGTCCCTCGTGGGTACAAGCCGGT
AGGGCATCAATGTGTGTGGTTGTTAGTGGTGAGGGGATAACCCTATCTGT
GGTCATCAAATGGCTTGTTTGTGGGATACTATCACGGTATGTGCAGTAGT
GTGAGTAAGATTGTGCTTGTGCTCGTTTTGCGCTAGTGTCGTTGTTTGCA
CGCACGCCCATACAAACGTCGATTGGCAAACGCAGCTTGCCTCAGGCCAT
CGCGTGCTGGTCCTCCAAGAGATTCTCGTCGTTTTTTTTTTATATTTGGT
GTTTCATCGTCGTGATGCGAGACGCTGTTTGCGCGCCCGTAGTCTAAAAC
TTTCTTTGGCCGCGTGTGCCATGCGCGCACCGAGACGAGGAATTTTGTTC
CCCGAAAAAAATCTGTGCGGCTCCTCAAGAGCCAGCGAGAGATATCCCGT
TTCTGTGTGACAGCGATAGCGGCGCGTTTGACCTATGTAGTTCGACGTTT
GTTGTCGCCACGCGAGTGGGAGGTAGACGGTAGAGAAACGCTCCTTGACA
TCATGGGGCCATCGGTGTAAAGGGAGTAGAATATAGTATGTATTTATGAC
CAGCAAAAGACGCGACGAAGCTTGCCGTTGGTAGCGTGCGCAAGCTCATT
CGCAACCGCCTCAGCGCAGTGTCGTGAACAGAATAATCTCTGAATGCAGC
GGAGAGCAATGCCGCACTTTGTACGTTCCTCTTCATCGGACCCTAGGGCT
ACAGGGTGTCCTACGCCGAAATGGTTGGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig90:218582..222410-

>mRNA_E-siliculosus-1a_M_contig90.17127.1 ID=mRNA_E-siliculosus-1a_M_contig90.17127.1|Name=mRNA_E-siliculosus-1a_M_contig90.17127.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1122bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig90:218582..222410- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGCAGATCATCGCTCGTCTCGCCAACATCCTCAACGGCCTCCAGAT
GGGGCAGATCATCGCTCGTCTCGCCAACATCCTCAACGGCCTCCAGGAAA
AGCGCCTTCTGCTGCTGGGTTTGGACGCTGCCGGCAAGACCTCTCTTTTG
GAAAAGCGCCTTCTGCTGCTGGGTTTGGACGCTGCCGGCAAGACCTCTCT
TTTGTACAGGCTTCACTTGAATGAGGTGGTGACTACCATCCCCACCATTG
GCTTCAACGTCGAACGGGTCGAGTACAACAGGATGATGATGACTATCTGT
ACAGGCTTCACTTGAATGAGGTGGTGACTACCATCCCCACCATTGGCTTC
AACGTCGAACGGGTCGAGTACAACAGGATGATGATGACTATCTGGGATAT
CGGGGGTCAAACCAAGCTACGGCCGCTCTGGCACCACTATTTCATCAACA
CCGACGCCTTGATCTTCGTCGTGGATTCTAACGACCATGAGCGCATCGAG
GAAGCGCGGGACGAGCTGTTCCACATACTGCAGGACCCTAACATGGATGA
CTGCCAAACTGTCCTCATTTTCCTTAACAAGCAGGGATATCGGGGGTCAA
ACCAAGCTACGGCCGCTCTGGCACCACTATTTCATCAACACCGACGCCTT
GATCTTCGTCGTGGATTCTAACGACCATGAGCGCATCGAGGAAGCGCGGG
ACGAGCTGTTCCACATACTGCAGGACCCTAACATGGATGACTGCCAAACT
GTCCTCATTTTCCTTAACAAGCAGGACCTTCCCGGTGCGATCAGCCCTAG
CGCCATGCGCAGCAAGCTCGGCTTGGACGGTGCGGGACGCAATCCGCTCA
TGAAGCGCAATTGGTACATGCAGGACCTTCCCGGTGCGATCAGCCCTAGC
GCCATGCGCAGCAAGCTCGGCTTGGACGGTGCGGGACGCAATCCGCTCAT
GAAGCGCAATTGGTACATGCAGGGCTGCTGTGCGGTCACGGGCGAGCGAG
TATACGATGGTCTCGACTGGCTGAGGGGAGCGTTGAACAAGAAATGAGGC
TGCTGTGCGGTCACGGGCGAGCGAGTATACGATGGTCTCGACTGGCTGAG
GGGAGCGTTGAACAAGAAATGA
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