mRNA_E-siliculosus-1a_M_contig9.17095.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.17095.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.17095.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17095.1 vs. uniprot
Match: D7G4L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L8_ECTSI)

HSP 1 Score: 545 bits (1404), Expect = 6.850e-195
Identity = 283/301 (94.02%), Postives = 288/301 (95.68%), Query Frame = 1 
Query:   13 LCSLARLGLFKSANDAKSRFIHKHIRAATALAKSSSSPEVGEGMGMAEPLPRHWGGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAERIRDHRSLGSRSKSQGPGPEGVKSLTSAVPIASARGARLQRGRSDDGFVVGKKTNHREHPSPRHLHQHLRHHPHPYQRGGHNSDQRQPKHRPPSTHAVILPKGGGLVLIGEDGVRKSKFPRGCEPSAAAMAAANVATTPPLQSKSSGESEDDDVLARLCNPKHFTGTAATGHLPVVVDLEGGVGVLLKGASIAVKYHIGKQEVSWRLRLAERL 915
            L SLARLGLFKSANDAKSRFIHKHIRAATAL+ +SSSPEVGEGMGM EPLPRHWGGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAERIRDHRSLGSRSKSQGPGPEGVKSLTS VP ASARGARLQRGRS+D FVVGKKTNH EHPSPRH HQHLRHHPHP QRGGHNSDQRQPKHRPPSTHAVILPKGGGLVLIGEDGVRKSKFPRGCE SAAAMA  +VATTPPL+SKSSGESEDDDVLARLCNPKHFTGTAATGHLPVVVDLEGGVGVLLKGASIAVK HIGKQEVSWRLRLAERL
Sbjct:    7 LPSLARLGLFKSANDAKSRFIHKHIRAATALSHTSSSPEVGEGMGMPEPLPRHWGGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAERIRDHRSLGSRSKSQGPGPEGVKSLTSVVPKASARGARLQRGRSEDSFVVGKKTNHCEHPSPRHPHQHLRHHPHPCQRGGHNSDQRQPKHRPPSTHAVILPKGGGLVLIGEDGVRKSKFPRGCELSAAAMA--SVATTPPLESKSSGESEDDDVLARLCNPKHFTGTAATGHLPVVVDLEGGVGVLLKGASIAVKDHIGKQEVSWRLRLAERL 305
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BLAST of mRNA_E-siliculosus-1a_M_contig9.17095.1 vs. uniprot
Match: A0A6H5KLC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC7_9PHAE)

HSP 1 Score: 430 bits (1106), Expect = 4.250e-149
Identity = 238/301 (79.07%), Postives = 246/301 (81.73%), Query Frame = 1 
Query:   13 LCSLARLGLFKSANDAKSRFIHKHIRAATALAKSSSSPEVGEGMGMAEPLPRHWGGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAERIRDHRSLGSRSKSQGPGPEGVKSLTSAVPIASARGARLQRGRSDDGFVVGKKTNHREHPSPRHLHQHLRHHPHPYQRGGHNSDQRQPKHRPPSTHAVILPKGGGLVLIGEDGVRKSKFPRGCEPSAAAMAAANVATTPPLQSKSSGESEDDDVLARLCNPKHFTGTAATGHLPVVVDLEGGVGVLLKGASIAVKYHIGKQEVSWRLRLAERL 915
            L SLARLGLFKSANDAKSRFI+KHIRAAT LA +SSSPEVGEGMG  EPLPRH  GPPEFPRAKVAAPVAVMATEAALEDYRQRRRAE IRDHR  GS+S+ QGPGPEG+KSL SAVP ASARGA L+RGRSDDGFVV KKTN REHPSPRH HQ+LRH       G HNSDQ QPK R PSTHAVILPKGGGLVLIGEDGVRKSKFPRGCEPS+A                        DVLARLCNPKHFTGTAATG LPVVVDLE GVGVLLKGASIAVK HIGKQEVSWRLRLAERL
Sbjct:   35 LPSLARLGLFKSANDAKSRFINKHIRAAT-LAHTSSSPEVGEGMGRQEPLPRHCSGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAEIIRDHRGPGSKSEPQGPGPEGLKSLASAVPKASARGASLRRGRSDDGFVVSKKTNQREHPSPRHPHQYLRHXXXXXXXGEHNSDQPQPKQRSPSTHAVILPKGGGLVLIGEDGVRKSKFPRGCEPSSATXXXXXXXXXXXXXXX--XXXXXXDVLARLCNPKHFTGTAATGRLPVVVDLERGVGVLLKGASIAVKDHIGKQEVSWRLRLAERL 332
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.17095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4L8_ECTSI6.850e-19594.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLC7_9PHAE4.250e-14979.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:2006141..2008184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size918
Model size918
Exons4
Ec32 orthologEc-07_000110.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorymitochondrion
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.17095.1prot_E-siliculosus-1a_M_contig9.17095.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 2006141..2008184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936415.5239627-CDS-E-siliculosus-1a_M_contig9:2006140..20062211622936415.5239627-CDS-E-siliculosus-1a_M_contig9:2006140..2006221Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2006141..2006221 +
1696251067.9644797-CDS-E-siliculosus-1a_M_contig9:2006140..20062211696251067.9644797-CDS-E-siliculosus-1a_M_contig9:2006140..2006221Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2006141..2006221 +
1622936415.542803-CDS-E-siliculosus-1a_M_contig9:2006782..20069801622936415.542803-CDS-E-siliculosus-1a_M_contig9:2006782..2006980Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2006783..2006980 +
1696251067.9791317-CDS-E-siliculosus-1a_M_contig9:2006782..20069801696251067.9791317-CDS-E-siliculosus-1a_M_contig9:2006782..2006980Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2006783..2006980 +
1622936415.5571303-CDS-E-siliculosus-1a_M_contig9:2007243..20077921622936415.5571303-CDS-E-siliculosus-1a_M_contig9:2007243..2007792Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2007244..2007792 +
1696251067.9942822-CDS-E-siliculosus-1a_M_contig9:2007243..20077921696251067.9942822-CDS-E-siliculosus-1a_M_contig9:2007243..2007792Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2007244..2007792 +
1622936415.5812452-CDS-E-siliculosus-1a_M_contig9:2008094..20081841622936415.5812452-CDS-E-siliculosus-1a_M_contig9:2008094..2008184Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2008095..2008184 +
1696251068.0092077-CDS-E-siliculosus-1a_M_contig9:2008094..20081841696251068.0092077-CDS-E-siliculosus-1a_M_contig9:2008094..2008184Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 2008095..2008184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.17095.1

>prot_E-siliculosus-1a_M_contig9.17095.1 ID=prot_E-siliculosus-1a_M_contig9.17095.1|Name=mRNA_E-siliculosus-1a_M_contig9.17095.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=306bp
MWFCLCSLARLGLFKSANDAKSRFIHKHIRAATALAKSSSSPEVGEGMGM
AEPLPRHWGGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAERIRDHRSL
GSRSKSQGPGPEGVKSLTSAVPIASARGARLQRGRSDDGFVVGKKTNHRE
HPSPRHLHQHLRHHPHPYQRGGHNSDQRQPKHRPPSTHAVILPKGGGLVL
IGEDGVRKSKFPRGCEPSAAAMAAANVATTPPLQSKSSGESEDDDVLARL
CNPKHFTGTAATGHLPVVVDLEGGVGVLLKGASIAVKYHIGKQEVSWRLR
LAERL*
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mRNA from alignment at E-siliculosus-1a_M_contig9:2006141..2008184+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.17095.1 ID=mRNA_E-siliculosus-1a_M_contig9.17095.1|Name=mRNA_E-siliculosus-1a_M_contig9.17095.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2044bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:2006141..2008184+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGGTTCTGCCTTTGCAGCCTAGCGAGGCTGGGCCTGTTCAAGTCAGC
CAATGACGCTAAGTCAAGATTCATTCACAAGGTCAGGGTAGACCTACACA
CAATCACACCGGCGTGAAGAGTTCGTTCGACCAACCACCGATACGGTGGG
CTTGGATTGGGAACAAACAAACCTTTGTACCGAGAAAGCCATACGTCTGC
CGCTGCTGGTTGATTCTACGTCACCCGTGCAACCCTCTCCTCTGTCGGAA
CCCGTGGTACTACACAAACCCATTCCTGCTGATTGCGAACTCCCCTCAGA
CTTGTTCTTCATGAGAGCAACGCAGACGTTCAGTACCCCATTACCCTTTT
TCTTTTATCTTTTTAGCAGTTAGTTCTACAGCTACAAGTGTGTGGTATTG
ACGCTCCCGATTACTGTACCTTGTTCAAAGCGCCGCGTTCCTCATCACAG
CATTTGGAATTTAACACTTCATTCAGCCTATATTCACTCTAGGGGCCATG
CCCGGCAGACAACCTTCCGCTGAAATTTTCATTTGCTCAGCTATTCGATT
TCAGGTGTATTTGCTGCATGACGCGATCTATCACCCCCGCCCCTGTCGAT
TCGATTCGCTTGATATCGCACCATGCATTGCGTCCTTCACAGCACATTAG
AGCGGCGACGGCACTTGCAAAATCATCATCTTCGCCAGAGGTTGGCGAGG
GCATGGGGATGGCAGAACCTCTTCCTCGTCACTGGGGCGGCCCTCCTGAA
TTCCCTCGGGCTAAAGTAGCTGCACCAGTGGCGGTGATGGCAACCGAGGC
CGCTCTTGAGGACTACAGGCAGCGTCGGAGAGCCGAAAGAGTAAGAAAAA
CGCCTCGTTGTTGCTCGCCACACCTATTGTGTCCGGACGGCTTCTTTACC
CCGACGTATGAAGACCTCTTTTCATTAACTCGAAATGTTTCTGACACTGA
CAGACTTGTCCAACCGTCGATAAGCGAATCTCCGTCATGGGTTCAAGGTT
GTAGTCCCTACTATCTCCCGAGACCTCACTTTCTCCCTATCTCCGATACA
CACTTCTCTCACATTCTCTCGAACGTTCCCTTTTCCTGTGCACTTCCGGA
CAGATACGAGACCACAGGAGTCTCGGCAGTAGAAGCAAATCTCAAGGCCC
CGGACCGGAGGGGGTAAAGTCGTTGACGTCGGCGGTGCCGATTGCGTCGG
CGAGAGGAGCACGCCTTCAGCGAGGCCGATCCGACGACGGCTTCGTCGTC
GGCAAGAAGACCAACCACCGCGAGCATCCTTCCCCGCGACACCTTCACCA
GCATCTTCGCCACCATCCTCACCCTTACCAACGCGGAGGGCACAACAGCG
ATCAACGCCAACCCAAGCACCGCCCGCCATCCACGCACGCGGTTATTCTT
CCGAAAGGAGGAGGACTGGTTTTGATAGGGGAAGACGGCGTTCGCAAGAG
CAAATTCCCGAGGGGATGCGAACCGTCAGCCGCGGCGATGGCGGCGGCGA
ACGTCGCTACCACGCCACCGCTTCAGAGTAAATCAAGCGGAGAGAGCGAG
GACGACGACGTGTTGGCACGTCTCTGCAACCCTAAGCACTTCACGGGCAC
GGCCGCCACGGGGCATCTCCCCGTCGTGGTCGATCTCGAGGGAGGAGTCG
GGGTGAGTCAGGCCCTCTCGCCCTCAACATTATCCAGTGCAAAGTTTGTG
TCTTTAATGCGCCTGTGCTACTAATGGCGTCATGTGTATGTGGGTGCTTC
GATGTTTGGGTTCCGCGTTTGGTCGTCGTGTCTTCAGTTGTACCTGTATT
GAGCGCTTCTGTCGTTCCGTTTTTTTTAGGTGGGGCGTTGGCTCTTAACT
TGATTCTACCGGCAGATGATCTGCTGAAAAACTACAGCTAGCTGATCATC
ATCCGTCGGCAATCAATGTGGGTGTTCTGCAATCTATTCGCGTGCCTTCG
CCAGGTGCTTCTCAAGGGCGCTTCCATTGCGGTGAAATATCACATCGGCA
AGCAGGAAGTCAGCTGGAGGCTCAGGCTGGCAGAACGACTCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:2006141..2008184+

>mRNA_E-siliculosus-1a_M_contig9.17095.1 ID=mRNA_E-siliculosus-1a_M_contig9.17095.1|Name=mRNA_E-siliculosus-1a_M_contig9.17095.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1836bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:2006141..2008184+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGGTTCTGCCTTTGCAGCCTAGCGAGGCTGGGCCTGTTCAAGTCAGC
CAATGACGCTAAGTCAAGATTCATTCACAAGATGTGGTTCTGCCTTTGCA
GCCTAGCGAGGCTGGGCCTGTTCAAGTCAGCCAATGACGCTAAGTCAAGA
TTCATTCACAAGCACATTAGAGCGGCGACGGCACTTGCAAAATCATCATC
TTCGCCAGAGGTTGGCGAGGGCATGGGGATGGCAGAACCTCTTCCTCGTC
ACTGGGGCGGCCCTCCTGAATTCCCTCGGGCTAAAGTAGCTGCACCAGTG
GCGGTGATGGCAACCGAGGCCGCTCTTGAGGACTACAGGCAGCGTCGGAG
AGCCGAAAGACACATTAGAGCGGCGACGGCACTTGCAAAATCATCATCTT
CGCCAGAGGTTGGCGAGGGCATGGGGATGGCAGAACCTCTTCCTCGTCAC
TGGGGCGGCCCTCCTGAATTCCCTCGGGCTAAAGTAGCTGCACCAGTGGC
GGTGATGGCAACCGAGGCCGCTCTTGAGGACTACAGGCAGCGTCGGAGAG
CCGAAAGAATACGAGACCACAGGAGTCTCGGCAGTAGAAGCAAATCTCAA
GGCCCCGGACCGGAGGGGGTAAAGTCGTTGACGTCGGCGGTGCCGATTGC
GTCGGCGAGAGGAGCACGCCTTCAGCGAGGCCGATCCGACGACGGCTTCG
TCGTCGGCAAGAAGACCAACCACCGCGAGCATCCTTCCCCGCGACACCTT
CACCAGCATCTTCGCCACCATCCTCACCCTTACCAACGCGGAGGGCACAA
CAGCGATCAACGCCAACCCAAGCACCGCCCGCCATCCACGCACGCGGTTA
TTCTTCCGAAAGGAGGAGGACTGGTTTTGATAGGGGAAGACGGCGTTCGC
AAGAGCAAATTCCCGAGGGGATGCGAACCGTCAGCCGCGGCGATGGCGGC
GGCGAACGTCGCTACCACGCCACCGCTTCAGAGTAAATCAAGCGGAGAGA
GCGAGGACGACGACGTGTTGGCACGTCTCTGCAACCCTAAGCACTTCACG
GGCACGGCCGCCACGGGGCATCTCCCCGTCGTGGTCGATCTCGAGGGAGG
AGTCGGGATACGAGACCACAGGAGTCTCGGCAGTAGAAGCAAATCTCAAG
GCCCCGGACCGGAGGGGGTAAAGTCGTTGACGTCGGCGGTGCCGATTGCG
TCGGCGAGAGGAGCACGCCTTCAGCGAGGCCGATCCGACGACGGCTTCGT
CGTCGGCAAGAAGACCAACCACCGCGAGCATCCTTCCCCGCGACACCTTC
ACCAGCATCTTCGCCACCATCCTCACCCTTACCAACGCGGAGGGCACAAC
AGCGATCAACGCCAACCCAAGCACCGCCCGCCATCCACGCACGCGGTTAT
TCTTCCGAAAGGAGGAGGACTGGTTTTGATAGGGGAAGACGGCGTTCGCA
AGAGCAAATTCCCGAGGGGATGCGAACCGTCAGCCGCGGCGATGGCGGCG
GCGAACGTCGCTACCACGCCACCGCTTCAGAGTAAATCAAGCGGAGAGAG
CGAGGACGACGACGTGTTGGCACGTCTCTGCAACCCTAAGCACTTCACGG
GCACGGCCGCCACGGGGCATCTCCCCGTCGTGGTCGATCTCGAGGGAGGA
GTCGGGGTGCTTCTCAAGGGCGCTTCCATTGCGGTGAAATATCACATCGG
CAAGCAGGAAGTCAGCTGGAGGCTCAGGCTGGCAGAACGACTCTAGGTGC
TTCTCAAGGGCGCTTCCATTGCGGTGAAATATCACATCGGCAAGCAGGAA
GTCAGCTGGAGGCTCAGGCTGGCAGAACGACTCTAG
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