|
|
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.17007.1 vs. uniprot
Match: A0A6H5L191_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L191_9PHAE) HSP 1 Score: 379 bits (973), Expect = 9.000e-133 Identity = 181/185 (97.84%), Postives = 181/185 (97.84%), Query Frame = 1
Query: 1 MPDAGKLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHPTRYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHTGGNHFEALKALGEVKPIDGWTVQEVMLEEDRSSFTSPVRAGDQ 555
MPDAGKLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHP RYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHTGGNHFEALKALGEVKPIDGW VQEVMLEEDRSS TS VRAGDQ
Sbjct: 28 MPDAGKLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRNQAVDQVYSHPARYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINAVARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHTGGNHFEALKALGEVKPIDGWKVQEVMLEEDRSSSTSSVRAGDQ 212
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 558 |
| Model size | 558 |
| Exons | 5 |
| Ec32 ortholog | Ec-07_001140.2 |
| Ec32 ortholog description | Ovarian tumour, otubain |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.17007.1 >prot_E-siliculosus-1a_M_contig9.17007.1 ID=prot_E-siliculosus-1a_M_contig9.17007.1|Name=mRNA_E-siliculosus-1a_M_contig9.17007.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=186bp
MPDAGKLILYPRELFQAIPNGGKGDCGPAALWHLIYGGRPTSRDLKEMRN
QAVDQVYSHPTRYMDFFDGETEGRRKGMLYKWTRLMRQKGEWADQLFINA
VARAHEVNIRILVPEKNNTLRDEQGNYAGQGTARRTYYMLHTGGNHFEAL
KALGEVKPIDGWTVQEVMLEEDRSSFTSPVRAGDQ* back to topmRNA from alignment at E-siliculosus-1a_M_contig9:956107..959138+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig9.17007.1 ID=mRNA_E-siliculosus-1a_M_contig9.17007.1|Name=mRNA_E-siliculosus-1a_M_contig9.17007.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3032bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:956107..959138+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTGATGCAGGGAAGTTAATCCTCTATCCGGTGAGTTTTCCTGAATT
GTAGAAGCTGCCACCGACCAATGACGTGTACTCATGCAGCCCGCCGCATG
CGGTGGAACTTCACCTGCAGCCGACGCATCGCAGCGCTTCCTCTCTCCAT
ACAGTTTGCCTTACTACCGGCTTTCGCTGTGGCCAATAAATGCTTTTTAT
GCGACAGAATATCTTCACCACCCGCCCGAGCCACGTTTTGGACGAAGCGG
TTGGCGAAGAGCATTGCTATGCTCCGATTGTTCTCTCTTCTGGCTTCTCA
CGGTTACTTTTTTCCGACGAGTGTAACATAACACAGCAGTTTGTACACTC
TGTTCAGCTGTTTATCACACGATCCCACCTCTGACGAGAAACCCCGCTCG
GTATTAAAACACATCACTAGAGCAGCAAACGCCCAAAGTTATCCCAAAAA
TAGGCAGTTGGGGTTAACAAAACAGCAGTCTAGACACTCGGAGGCGGCGA
AGAAATACAAACCTGGAACCTCGACGCAATGAACAAAGCTGTTGGATTAG
CGGGGCCGGTATAGCAAGTCGGGGTCCCTCTTTGAGGGCGGGCGGAATCT
CTTGGCACAGATAGAATGACACTGTTCTGGGCGGGGTAGGTGCCCACGTC
AGGGCGGGCGGACCTGCCTGCCACAACCCCACCCTATTGAAGCTCGTACT
GCTGTATCAGGGCTGTCATTGAGCGGCAGCCTTCAAGTGCCGAGTGCCGG
TATGCATCGGATATATATGCGGATGTAGAACGCGCCACACGCATGAGAAG
AGAACCTGTTCAGAATTCCGGCTCAAGACACGAGAAATTTCAAAACATGA
CCATACGACCATATGCTCAGGTAAAAATACTACACACAATCCTATATAGT
GGCTGCATCAGCGTTGAATATCAGCGTGTATGGGTACCCCTGTGGTGACC
TTTGATTGACGTTGACCGGCGGCAGCTGCACTCGTGCGCGGTCATGTCAA
AACCGCGCGGCCTTGCTATGTCGATACAAAGCAGGTCAGGTGCTTTCCAC
TCCGCTCATAAGCGCCATGTAGACGGAGAAGCGGAATCCCGACCAGGACC
TCGCCGCTCTCGTTCCGGATGTTGAACAAACATTAATCGAAACACCGTCC
GCTCGCCACACACAAAACACAACACGGTGTAACAGAGGGAGTTGTTCCAG
GCGATTCCCAACGGCGGGAAGGGGGACTGCGGCCCGGCTGCTCTGTGGCA
CTTGATTTACGGCGGGCGTCCCACCAGCCGCGACCTAAAGGAGATGCGGA
ACCAGGCGGTGGACCAGGTAGGGCTGGGTGCACGACAGCCGAGGAGCAGA
GGTTCAGATCGATGGGAAGATGAAGACTTTCGTTGCGGGAATCGTGTTCT
TCGAATTATGAAATATTTTCCATTGTCCGTACGTGTTTGGGTCGGTGACA
ATCGCATTCTTTTTTGGCTGCCAGCGTGGTACTTTGTTTGCATTGCCATC
AAGTTATGAAACAGAATGGGTTAGAAACGTGGTGGTTTGACTTGTCCACC
GGGACGAATGCACACTCTGATTGGCCAGTACCTGAATGGCCCAACGATTA
AAAGAGCATCGCCTGTACAACAAAGAAGACTACAACAAGACTGGGTACCG
AGACGGTCAGGAGACCCCTCCTTTCATCGTCTCTAAGGGCACGAAAAACA
AAGACTCAAGCCACAACAATGACATTGTGTTGGCCTCCCGAACCCGCCAT
GTTGTTGCTGAACTACAAAGGTTTACAGCCACCCTACTCGGTACATGGAT
TTTTTCGACGGCGAGACGGAGGGGAGGCGAAAAGGGATGCTTTATAAATG
GACAAGACTGATGAGACAAAAGGGCGAGTGGGCGGATCAGCTGTTTATCA
ACGCAGTCGCCAGAGCACACGAGGTGCGGGTGTAGCTTCCGATGCCATCG
CCGTTCGAATAGAGCATGGATCGCTGCTTGTGTTGCCACAACGCCATTTG
TTGTTTCGGACTCGTTGACACGGCTGACCATCTTGCTCACGCACCTGCTC
GAAACCTGCGTTCGTGATGCTTGTCGTGTCCCATGTTTGCTTTGCTGCGG
CTCGATGCCACCTGGTAGGATGAAGTACCATCCCGCGTATCTTCGTCCGT
CCGTCTGTCTGTCTTGTCTTTGTGTGTTCTGGCTACTTCTAGGCACCCTT
TTGGTTTGTACCAGGTAGACAACTCTTCGCGTTTTCCTTTTTTTTTTTTG
TGGTACCTCTATGGTAAAGGTCAACATTCGGATCCTTGTACCGGAGAAGA
ACAATACTCTACGTGACGAGCAAGGAAACTACGCCGGCCAGGGCACCGCT
CGAAGGACGTACTACATGCTGCACACCGGCGGCAACCACTTCGAGGCCCT
CAAGGCGCTTGGCGAGGTCAAGCCCATCGACGGCTGGACGGTTCAAGAGG
TGTGGAAATGATGGTCGGCGGTGGCATTCGGGACGGTCGTGCTCCACGCC
AATGGTTTGGAGATATTCTAACTGGTTGTTTTTTTGTTGTGACGGGCGTT
GATTGCATGTTGCTATACTACCGTATCACGAGCTGTGCAGACGCGTCGGT
ATATCGTCGGTTTTCCGACGTGCGCGTCGACCTGACAACGAAGAATCTTT
TTCATACGGAGGCGCAAGAATTGGGGGCCTCAATACGAGATATTGACGCG
TCTCCTGCCAACCGTGGTATGCATATCCTGGAATTTATTTTTTTTCTTGC
GGCGTTGGGTGTTGTGGAGAAGAAAAGCAACGAGGGCAGGAGCCCCATTC
ATCGGAGCTTGTCCCCCGTTTCCAAGTGGTTATTGGCTTTGGCTAGCATT
TTATCCCGAAATGCCACCGAGAAAGTCGGGACATCTGTTGCCCACCCTCG
AATTCGCGGTGCTTACGGATGGCTTGGTTTTTTTGTTTTTGTGCTCGCCC
CCGTGGGTTGTCCTGCACAAAGGTGATGCTCGAGGAGGATAGGTCATCTT
TTACGTCGCCTGTTAGGGCGGGAGACCAATAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:956107..959138+ >mRNA_E-siliculosus-1a_M_contig9.17007.1 ID=mRNA_E-siliculosus-1a_M_contig9.17007.1|Name=mRNA_E-siliculosus-1a_M_contig9.17007.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1116bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:956107..959138+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTGATGCAGGGAAGTTAATCCTCTATCCGATGCCTGATGCAGGGAA
GTTAATCCTCTATCCGAGGGAGTTGTTCCAGGCGATTCCCAACGGCGGGA
AGGGGGACTGCGGCCCGGCTGCTCTGTGGCACTTGATTTACGGCGGGCGT
CCCACCAGCCGCGACCTAAAGGAGATGCGGAACCAGGCGGTGGACCAGAG
GGAGTTGTTCCAGGCGATTCCCAACGGCGGGAAGGGGGACTGCGGCCCGG
CTGCTCTGTGGCACTTGATTTACGGCGGGCGTCCCACCAGCCGCGACCTA
AAGGAGATGCGGAACCAGGCGGTGGACCAGGTTTACAGCCACCCTACTCG
GTACATGGATTTTTTCGACGGCGAGACGGAGGGGAGGCGAAAAGGGATGC
TTTATAAATGGACAAGACTGATGAGACAAAAGGGCGAGTGGGCGGATCAG
CTGTTTATCAACGCAGTCGCCAGAGCACACGAGGTTTACAGCCACCCTAC
TCGGTACATGGATTTTTTCGACGGCGAGACGGAGGGGAGGCGAAAAGGGA
TGCTTTATAAATGGACAAGACTGATGAGACAAAAGGGCGAGTGGGCGGAT
CAGCTGTTTATCAACGCAGTCGCCAGAGCACACGAGGTCAACATTCGGAT
CCTTGTACCGGAGAAGAACAATACTCTACGTGACGAGCAAGGAAACTACG
CCGGCCAGGGCACCGCTCGAAGGACGTACTACATGCTGCACACCGGCGGC
AACCACTTCGAGGCCCTCAAGGCGCTTGGCGAGGTCAAGCCCATCGACGG
CTGGACGGTTCAAGAGGTCAACATTCGGATCCTTGTACCGGAGAAGAACA
ATACTCTACGTGACGAGCAAGGAAACTACGCCGGCCAGGGCACCGCTCGA
AGGACGTACTACATGCTGCACACCGGCGGCAACCACTTCGAGGCCCTCAA
GGCGCTTGGCGAGGTCAAGCCCATCGACGGCTGGACGGTTCAAGAGGTGA
TGCTCGAGGAGGATAGGTCATCTTTTACGTCGCCTGTTAGGGCGGGAGAC
CAATAGGTGATGCTCGAGGAGGATAGGTCATCTTTTACGTCGCCTGTTAG
GGCGGGAGACCAATAG back to top
|