mRNA_E-siliculosus-1a_M_contig9.16969.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig9.16969.1 vs. uniprot
Match: A0A6H5JAX5_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX5_9PHAE) HSP 1 Score: 603 bits (1556), Expect = 2.550e-199 Identity = 546/598 (91.30%), Postives = 556/598 (92.98%), Query Frame = 1
Query: 49 MPSPTGMSFVSPPNTGAQLGAVLHVGAVPPPRGGRVFMCSTTATTATRSNDEAVREAATTGDDAASPGLTPAAAPLAGGRMAGLSRAREAAAAARDVGAMADGPGNNGSVLEQQVVPAATTR--RVRHRPRSDGQAAPSTAAAREARGSPAEQRFYGSPEEVVASAKKEGVSVRALRRSRALVRRIKRIPKTKSSWEAALRELARAEKEEARHXXXXXXXXXXXXXAGQDGEPLDLI-SGSSGTAKAARVGMVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCHSKTGENWEAAAALLRRSETLRNNFFYGRVIMTCRLAGRWQKALEVLRDMSRVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXLVLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLEPNTYSYGSVITVCATCGEVDQAVGLFD 1833
M SPTGM FVSPPNTGAQLGAVLHVGAVPPPRGG+VFMCSTTATTATRSNDEAVREAATTGDDAA P LTPAAAPLAGGRMAGLSRAREAAAAARDVGAM DGPGNNGS+LE RVR RPRSD QAAPSTAAAR ARGSPAEQ YGS EEV ASAKKEGVS RALRRSRALVRRIKRIPKT+SSWEAALREL +AE+EEARH XXXXXXXXXXX AGQDGEPLDLI S SS T K RVGMVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSA LNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC SKTGENWEAAAALLRRS+TLRNNFFYGRVIM CR AG+WQKALEVLR+M RVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXX LSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DSG+EPNTYSYGSVITVCATCGEVD+AVGLFD
Sbjct: 1 MRSPTGMWFVSPPNTGAQLGAVLHVGAVPPPRGGQVFMCSTTATTATRSNDEAVREAATTGDDAAIPELTPAAAPLAGGRMAGLSRAREAAAAARDVGAMTDGPGNNGSLLEXXXXXXXXXXXXRVRQRPRSDDQAAPSTAAAR-ARGSPAEQLLYGSTEEVEASAKKEGVSARALRRSRALVRRIKRIPKTESSWEAALRELDQAEREEARHRXXXXXXXXXXXDAGQDGEPLDLINSSSSSTGKVVRVGMVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSATLNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDSKTGENWEAAAALLRRSDTLRNNFFYGRVIMACRRAGQWQKALEVLREMPRVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSGVEPNTYSYGSVITVCATCGEVDRAVGLFD 597
BLAST of mRNA_E-siliculosus-1a_M_contig9.16969.1 vs. uniprot
Match: D7G0N2_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N2_ECTSI) HSP 1 Score: 278 bits (710), Expect = 3.880e-79 Identity = 325/347 (93.66%), Postives = 328/347 (94.52%), Query Frame = 1
Query: 793 MVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCHSKTGENWEAAAALLRRSETLRNNFFYGRVIMTCRLAGRWQKALEVLRDMSRVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXLVLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLEPNTYSYGSVITVCATCGEVDQAVGLFD 1833
MVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC SKTGENWEAAAALLRRSETLRNNFFYGRVIM CR AG+WQKALEVLR+MSRVGL PDIFCYDTVISVAC+SSVGA XXXXXXXXXXXXXXXXXXXXXXXX SACKKAGRPRQAVSL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DS LEPNTYSYGSVITVCATCGEVDQAVGLFD
Sbjct: 1 MVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDSKTGENWEAAAALLRRSETLRNNFFYGRVIMACRRAGQWQKALEVLREMSRVGLAPDIFCYDTVISVACMSSVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSACKKAGRPRQAVSLLRAMRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFD 347 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig9.16969.1 >prot_E-siliculosus-1a_M_contig9.16969.1 ID=prot_E-siliculosus-1a_M_contig9.16969.1|Name=mRNA_E-siliculosus-1a_M_contig9.16969.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=865bp MPSPTGMSFVSPPNTGAQLGAVLHVGAVPPPRGGRVFMCSTTATTATRSNback to top mRNA from alignment at E-siliculosus-1a_M_contig9:494856..505662- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig9.16969.1 ID=mRNA_E-siliculosus-1a_M_contig9.16969.1|Name=mRNA_E-siliculosus-1a_M_contig9.16969.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=10807bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:494856..505662- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:494856..505662- >mRNA_E-siliculosus-1a_M_contig9.16969.1 ID=mRNA_E-siliculosus-1a_M_contig9.16969.1|Name=mRNA_E-siliculosus-1a_M_contig9.16969.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5190bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:494856..505662- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |