prot_E-siliculosus-1a_M_contig9.16969.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16969.1
Unique Nameprot_E-siliculosus-1a_M_contig9.16969.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length865
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16969.1 vs. uniprot
Match: A0A6H5JAX5_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX5_9PHAE)

HSP 1 Score: 602 bits (1553), Expect = 8.290e-201
Identity = 546/598 (91.30%), Postives = 556/598 (92.98%), Query Frame = 0 
Query:    1 MPSPTGMSFVSPPNTGAQLGAVLHVGAVPPPRGGRVFMCSTTATTATRSNDEAVREAATTGDDAASPGLTPAAAPLAGGRMAGLSRAREAAAAARDVGAMADGPGNNGSVLEQQVVPAATTR--RVRHRPRSDGQAAPSTAAAREARGSPAEQRFYGSPEEVVASAKKEGVSVRALRRSRALVRRIKRIPKTKSSWEAALRELARAEKEEARHXXXXXXXXXXXXXAGQDGEPLDLI-SGSSGTAKAARVGMVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCHSKTGENWEAAAALLRRSETLRNNFFYGRVIMTCRLAGRWQKALEVLRDMSRVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXLVLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLEPNTYSYGSVITVCATCGEVDQAVGLFD 595
            M SPTGM FVSPPNTGAQLGAVLHVGAVPPPRGG+VFMCSTTATTATRSNDEAVREAATTGDDAA P LTPAAAPLAGGRMAGLSRAREAAAAARDVGAM DGPGNNGS+LE            RVR RPRSD QAAPSTAAAR ARGSPAEQ  YGS EEV ASAKKEGVS RALRRSRALVRRIKRIPKT+SSWEAALREL +AE+EEARH XXXXXXXXXXX AGQDGEPLDLI S SS T K  RVGMVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSA LNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC SKTGENWEAAAALLRRS+TLRNNFFYGRVIM CR AG+WQKALEVLR+M RVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXX  LSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DSG+EPNTYSYGSVITVCATCGEVD+AVGLFD
Sbjct:    1 MRSPTGMWFVSPPNTGAQLGAVLHVGAVPPPRGGQVFMCSTTATTATRSNDEAVREAATTGDDAAIPELTPAAAPLAGGRMAGLSRAREAAAAARDVGAMTDGPGNNGSLLEXXXXXXXXXXXXRVRQRPRSDDQAAPSTAAAR-ARGSPAEQLLYGSTEEVEASAKKEGVSARALRRSRALVRRIKRIPKTESSWEAALRELDQAEREEARHRXXXXXXXXXXXDAGQDGEPLDLINSSSSSTGKVVRVGMVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSATLNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDSKTGENWEAAAALLRRSDTLRNNFFYGRVIMACRRAGQWQKALEVLREMPRVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXXXLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSGVEPNTYSYGSVITVCATCGEVDRAVGLFD 597
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BLAST of mRNA_E-siliculosus-1a_M_contig9.16969.1 vs. uniprot
Match: D7G0N2_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N2_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 4.310e-80
Identity = 325/347 (93.66%), Postives = 328/347 (94.52%), Query Frame = 0 
Query:  249 MVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCHSKTGENWEAAAALLRRSETLRNNFFYGRVIMTCRLAGRWQKALEVLRDMSRVGLTPDIFCYDTVISVACLSSVGAQXXXXXXXXXXXXXXXXXXXXXXXXLVLSACKKAGRPRQAVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGLEPNTYSYGSVITVCATCGEVDQAVGLFD 595
            MVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC SKTGENWEAAAALLRRSETLRNNFFYGRVIM CR AG+WQKALEVLR+MSRVGL PDIFCYDTVISVAC+SSVGA XXXXXXXXXXXXXXXXXXXXXXXX   SACKKAGRPRQAVSL       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   DS LEPNTYSYGSVITVCATCGEVDQAVGLFD
Sbjct:    1 MVDASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDSKTGENWEAAAALLRRSETLRNNFFYGRVIMACRRAGQWQKALEVLREMSRVGLAPDIFCYDTVISVACMSSVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSACKKAGRPRQAVSLLRAMRGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFD 347
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16969.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAX5_9PHAE8.290e-20191.30PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
D7G0N2_ECTSI4.310e-8093.66PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 194..221
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 634..809
coord: 489..635
coord: 193..472
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 251..429
e-value: 7.4E-37
score: 129.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 580..685
e-value: 1.1E-30
score: 108.3
coord: 686..817
e-value: 5.3E-31
score: 109.4
coord: 474..579
e-value: 1.2E-24
score: 88.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 429..456
e-value: 0.88
score: 10.0
coord: 290..316
e-value: 0.37
score: 11.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 629..688
e-value: 3.7E-8
score: 33.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 569..616
e-value: 9.7E-10
score: 38.5
coord: 500..546
e-value: 1.0E-9
score: 38.4
coord: 320..367
e-value: 3.2E-8
score: 33.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 679..713
e-value: 3.8E-5
score: 21.6
coord: 432..461
e-value: 0.0016
score: 16.5
coord: 607..640
e-value: 4.5E-4
score: 18.2
coord: 715..748
e-value: 1.7E-4
score: 19.6
coord: 322..355
e-value: 1.9E-8
score: 32.0
coord: 750..781
e-value: 2.9E-4
score: 18.8
coord: 535..562
e-value: 7.3E-5
score: 20.7
coord: 642..676
e-value: 7.6E-5
score: 20.6
coord: 500..533
e-value: 1.9E-7
score: 28.8
coord: 572..606
e-value: 2.1E-5
score: 22.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 640..675
score: 9.723
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 425..459
score: 9.547
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 460..497
score: 6.39
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 712..746
score: 10.183
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 498..532
score: 11.981
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 605..639
score: 10.304
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 355..389
score: 9.646
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 747..781
score: 11.181
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 676..706
score: 8.747
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 250..284
score: 5.908
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 570..604
score: 10.983
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 533..567
score: 8.966
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 320..354
score: 12.606
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 285..319
score: 8.122
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 695..798
e-value: 1.6E-6
score: 27.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:495311..505614 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16969.1mRNA_E-siliculosus-1a_M_contig9.16969.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig9 494856..505662 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig9.16969.1 ID=prot_E-siliculosus-1a_M_contig9.16969.1|Name=mRNA_E-siliculosus-1a_M_contig9.16969.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=865bp
MPSPTGMSFVSPPNTGAQLGAVLHVGAVPPPRGGRVFMCSTTATTATRSN
DEAVREAATTGDDAASPGLTPAAAPLAGGRMAGLSRAREAAAAARDVGAM
ADGPGNNGSVLEQQVVPAATTRRVRHRPRSDGQAAPSTAAAREARGSPAE
QRFYGSPEEVVASAKKEGVSVRALRRSRALVRRIKRIPKTKSSWEAALRE
LARAEKEEARHRRREQDQQNNDDDAGQDGEPLDLISGSSGTAKAARVGMV
DASYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAG
QWQRCLELLGEAREWGTELNEVSYNTAISACARRDRFEEALRLLRDMPSV
GLVPDGWSYGATLGACAGTGQASTALRLLREMEERGIEATASNYKHALYA
CCHSKTGENWEAAAALLRRSETLRNNFFYGRVIMTCRLAGRWQKALEVLR
DMSRVGLTPDIFCYDTVISVACLSSVGAQWKIARGLLREQAKTGVPCSLI
SYNLVLSACKKAGRPRQAVSLLRVMRRHGCSPDLISYNTAISACVKRREW
ELALFVLRDMQRPDSGLEPNTYSYGSVITVCATCGEVDQAVGLFDEMPEA
GVKVDAFTYNSVAMAYARDGRWRQAIATLSDMSKLGYVGDVVSYTAAIRA
CGWAGECDRALSLLREMREEKGVKPNRKTFAAAISACGHGGRWERGLELL
SEMPRSTGFLPDADCYTSAIKACGKGGQWEQAFTLLREAAAEGTTPDAKT
YEATIIACGTAGEWEKAVDLVHEMEGKGVPPHEICYIAAIRACEKAEEFQ
AAEALREEVEGLPPSRRGSSVKAKNTVSPRRRPRPEAGLRLGSGSSTKGA
TRAVSSGAVDVSPQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf