mRNA_E-siliculosus-1a_M_contig9.16960.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig9.16960.1
Unique NamemRNA_E-siliculosus-1a_M_contig9.16960.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16960.1 vs. uniprot
Match: D7FZB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB9_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.220e-41
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 201
            MGRDCKEAARALYACMKKTQCMKDGGRLK+CLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF
Sbjct:    1 MGRDCKEAARALYACMKKTQCMKDGGRLKDCLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 67
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16960.1 vs. uniprot
Match: A0A835ZA98_9STRA (Cytochrome c oxidase assembly protein PET191 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA98_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.200e-21
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 201
            M  DCKE ARAL ACM++++CM+ GG+L+ECLKT +   C    +S+FEC+RGQLDMRTRIRG RS+
Sbjct:    1 MSSDCKEHARALLACMQESKCMQGGGKLRECLKTDEVHQCELQRRSYFECRRGQLDMRTRIRGPRSY 67
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16960.1 vs. uniprot
Match: A0A482S5P5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5P5_9ARCH)

HSP 1 Score: 70.1 bits (170), Expect = 1.790e-14
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    1 MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRGERSF 201
            MG+ CK+ AR L  CM +TQC++ G  +KEC+KT + E  C Q  +++FECKRG LDMR RIRG + +
Sbjct:    1 MGKSCKDIARTLLDCMAETQCVQQGQDVKECMKTMEGEDRCGQLRRAYFECKRGSLDMRYRIRGPKVY 68
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16960.1 vs. uniprot
Match: K3X2Q5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2Q5_GLOUD)

HSP 1 Score: 68.6 bits (166), Expect = 9.640e-14
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRG 189
            MG+ C++ A AL  CM   +CM DG R LK+CLK  +    CR   Q++FECKRGQLDMRTRIRG
Sbjct:    1 MGKSCRDMAEALRDCMVTEECMSDGTRTLKQCLKMKEYAHECRGYRQAYFECKRGQLDMRTRIRG 65
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16960.1 vs. uniprot
Match: A0A3R7MTX6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MTX6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.310e-13
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRG 189
            MG+ C++AA AL  CM + +CM DG R LK+CL      + C++   ++FECKRGQLDMRTRIRG
Sbjct:    1 MGKACRDAAEALRDCMMEQECMADGTRTLKQCLHERTYSYECKEFRVAYFECKRGQLDMRTRIRG 65
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16960.1 vs. uniprot
Match: A0A2D4CB04_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CB04_PYTIN)

HSP 1 Score: 65.1 bits (157), Expect = 2.200e-12
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRG 189
            MG+ C++ A  L  CM + +CM DG R LK+CL+  +    CR+   ++FECKRGQLDMRTRIRG
Sbjct:    1 MGKSCRDMAELLRDCMVEEECMSDGTRTLKQCLRMKEYAHECRELRYAYFECKRGQLDMRTRIRG 65
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16960.1 vs. uniprot
Match: A0A8K1CG31_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG31_PYTOL)

HSP 1 Score: 64.7 bits (156), Expect = 3.040e-12
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    1 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF---CRQDHQSFFECKRGQLDMRTRIRG 189
            MG+ C++ A  L  CM + +CM+DG R LK+CLK   RE+   C +   ++FECKRGQLDMRTRIRG
Sbjct:    1 MGKSCRDMAELLRDCMVEQECMRDGTRTLKQCLKM--REYAHECSELRYAYFECKRGQLDMRTRIRG 65
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16960.1 vs. uniprot
Match: A0A024TWV1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TWV1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.550e-12
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSD-REFCRQDHQSFFECKRGQLDMRTRIRG 189
            MG+ C++ A AL  CM + +CM DG + LKECL+  + R  C++   ++FECKRGQ+DMR RIRG
Sbjct:    1 MGKACRDMAEALRDCMCEKECMSDGTKTLKECLRMEEFRHECKEYRLAYFECKRGQIDMRQRIRG 65
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16960.1 vs. uniprot
Match: A0A6G0XTT3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTT3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.870e-12
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSD-REFCRQDHQSFFECKRGQLDMRTRIRG 189
            MG+ C++ A AL  CM + +CM DG + LK+CL+  + R  C +   ++FECKRGQLDMR RIRG
Sbjct:    1 MGKSCRDMAEALRDCMVEKECMSDGTKTLKQCLQLEEFRHECHEYRVAYFECKRGQLDMRQRIRG 65
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig9.16960.1 vs. uniprot
Match: A0A067BWW3_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BWW3_SAPPC)

HSP 1 Score: 62.4 bits (150), Expect = 2.250e-11
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSD-REFCRQDHQSFFECKRGQLDMRTRIRG 189
            MG+ C++ A  L  CM + +CM DG R LK CLK  + +  C++   ++FECKRGQ+DMR RIRG
Sbjct:    1 MGKSCRDMAEQLRDCMLEMECMSDGKRTLKTCLKLDEYKHECKEYRYAYFECKRGQIDMRQRIRG 65
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig9.16960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB9_ECTSI1.220e-4198.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZA98_9STRA1.200e-2161.19Cytochrome c oxidase assembly protein PET191 n=1 T... [more]
A0A482S5P5_9ARCH1.790e-1451.47Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
K3X2Q5_GLOUD9.640e-1456.92Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3R7MTX6_9STRA7.310e-1353.85Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A2D4CB04_PYTIN2.200e-1252.31Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CG31_PYTOL3.040e-1253.73Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TWV1_9STRA5.550e-1250.77Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A6G0XTT3_9STRA7.870e-1250.77Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067BWW3_SAPPC2.250e-1149.23Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig9contigE-siliculosus-1a_M_contig9:419150..420299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size204
Model size204
Exons3
Ec32 orthologEc-07_001660.1
Ec32 ortholog descriptionCytochrome c oxidase assembly protein PET191
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03029
Best eggNOG OGNA|NA|NA
Best tax levelPythiales
CAZyGT54
COG Functional cat.S
EC2.4.1.145
EggNOG OGs1MHXH@121069,KOG4114@1,KOG4114@2759
EggNOG free text desc.cytochrome c oxidase assembly protein. Source PGD
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006996,GO:0007005,GO:0008150,GO:0008535,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0017004,GO:0019866,GO:0022607,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032592,GO:0033108,GO:0033617,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0065003,GO:0070013,GO:0071840,GO:0098573
KEGG ModuleM00075
KEGG Pathwayko00510,ko00513,ko01100,ko04714,map00510,map00513,map01100,map04714
KEGG ReactionR05987
KEGG koko:K00738,ko:K18178
Preferred nameCOA5
Seed eggNOG ortholog36331.EPrPI00000017314
Seed ortholog evalue5.9e-10
Seed ortholog score69.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig9.16960.1prot_E-siliculosus-1a_M_contig9.16960.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig9 419150..420299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936380.0880506-CDS-E-siliculosus-1a_M_contig9:419149..4192181622936380.0880506-CDS-E-siliculosus-1a_M_contig9:419149..419218Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 419150..419218 +
1696251051.6170428-CDS-E-siliculosus-1a_M_contig9:419149..4192181696251051.6170428-CDS-E-siliculosus-1a_M_contig9:419149..419218Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 419150..419218 +
1622936380.1045165-CDS-E-siliculosus-1a_M_contig9:419885..4199261622936380.1045165-CDS-E-siliculosus-1a_M_contig9:419885..419926Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 419886..419926 +
1696251051.6297443-CDS-E-siliculosus-1a_M_contig9:419885..4199261696251051.6297443-CDS-E-siliculosus-1a_M_contig9:419885..419926Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 419886..419926 +
1622936380.1195252-CDS-E-siliculosus-1a_M_contig9:420205..4202991622936380.1195252-CDS-E-siliculosus-1a_M_contig9:420205..420299Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 420206..420299 +
1696251051.6490562-CDS-E-siliculosus-1a_M_contig9:420205..4202991696251051.6490562-CDS-E-siliculosus-1a_M_contig9:420205..420299Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig9 420206..420299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig9.16960.1

>prot_E-siliculosus-1a_M_contig9.16960.1 ID=prot_E-siliculosus-1a_M_contig9.16960.1|Name=mRNA_E-siliculosus-1a_M_contig9.16960.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=68bp
MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREFCRQDHQSFFEC
KRGQLDMRTRIRGERSF*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig9:419150..420299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig9.16960.1 ID=mRNA_E-siliculosus-1a_M_contig9.16960.1|Name=mRNA_E-siliculosus-1a_M_contig9.16960.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1150bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:419150..420299+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGAGGGATTGCAAGGAGGCCGCGCGGGCTCTTTACGCCTGCATGAA
AAAGACCCAGTGCATGAAGGTAGGCACACACAACGTAGCTGTTCACCCCA
GTGGCACACCACGTACCCTATGTCACATCGCGCCCATGACTCGGCACTGA
TGAGTACTCCAGTGTTGTCGCAGGAGGCTGGTGTATGTTGTGTACTCGAC
AGCCGAATGTATTTCGATCTGATACCTGGTTGCGTTCGGAAAAGAGCGAC
GGTCCACCTTCGTTGGGTGTGCTGTGCTTTGCCATAAATGCCCGTACCTG
CTCTGCTCTGCGGCATTTTCCCCTATTGGATCCCTTCAACGCTTGGGCAT
TTCCTGGACGACAAGTCATGGCGACATTTGCTGGGTCAGATGGCAGCGAT
CTTATGATGGATTGGAAGAGAAGAAAGCACGCATGTCGAAGAATCTGTAG
CTATACATTAGACGAAGGAAAGTACGGCGAGCAGTTAGTTCGGCTGACTG
CTGTGATTTCGCGCAGGCAGTTTGCGTGCTGGTGCTGCTTCACCCATCCT
CTAAAATACGCAGGCTGTGTGGTCTTAAACACCAGTATCGATCTCGCATT
TCTCAAGCCCTTCCTCGAAGCCAGGGTGCTCTGCCTTCCCCAGGTATGTG
ATGAAGAACGCGCCCGTCTCGCTCGCTCGCTCCACCCGCCTCCCCATCTC
TCGCGTGGCGCCTCCTCTTCCGTCGTCTGTCCACAGGATGGTGGCCGCCT
GAAGGAGTGCCTTAAAACATCCGACAGGTTTGTGGCGAATGCTCGATGGG
GAGGGGGGGTGCTGCTATTGTAAGCCATCCAACGCCGGTTGCGACTTTCT
AGTTTAATCTATGTACCACGTTAGAGGGCAGTGTGGATTTCTTCGTGTCT
GTCCAGTGCGACCCCGTCGTGGCGTTGACTGGCCTTTCGTGCACGTCCAC
CCATTTTCAAGCTTTCACGGAGAGGGGATTTGGTGCTCCAAGTGACTCCC
CACCGAGACTATTTCCCGTTCAAATCTCGTGCTCATTCGTGTCGACAAAA
CCGCAGGGAGTTCTGCAGACAGGATCACCAGTCGTTTTTTGAGTGCAAGC
GCGGTCAGCTGGACATGAGGACAAGAATACGGGGAGAGCGGTCCTTCTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig9:419150..420299+

>mRNA_E-siliculosus-1a_M_contig9.16960.1 ID=mRNA_E-siliculosus-1a_M_contig9.16960.1|Name=mRNA_E-siliculosus-1a_M_contig9.16960.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=408bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig9:419150..420299+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGGAGGGATTGCAAGGAGGCCGCGCGGGCTCTTTACGCCTGCATGAA
AAAGACCCAGTGCATGAAGATGGGGAGGGATTGCAAGGAGGCCGCGCGGG
CTCTTTACGCCTGCATGAAAAAGACCCAGTGCATGAAGGATGGTGGCCGC
CTGAAGGAGTGCCTTAAAACATCCGACAGGATGGTGGCCGCCTGAAGGAG
TGCCTTAAAACATCCGACAGGGAGTTCTGCAGACAGGATCACCAGTCGTT
TTTTGAGTGCAAGCGCGGTCAGCTGGACATGAGGACAAGAATACGGGGAG
AGCGGTCCTTCTGAGGAGTTCTGCAGACAGGATCACCAGTCGTTTTTTGA
GTGCAAGCGCGGTCAGCTGGACATGAGGACAAGAATACGGGGAGAGCGGT
CCTTCTGA
back to top