prot_E-siliculosus-1a_M_contig89.16904.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig89.16904.1
Unique Nameprot_E-siliculosus-1a_M_contig89.16904.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length768
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig89.16904.1 vs. uniprot
Match: D7G3W7_ECTSI (Vps54_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W7_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 1.550e-119
Identity = 234/366 (63.93%), Postives = 236/366 (64.48%), Query Frame = 0
Query:   29 RDVPWAVIKVRSETEIIRCLDPRFFVEDFDPVTKILDDLPELGHSSFSLSAAGEAGGRGGKNSAGXXXXXXXXXXXXXXXXXXXXXGAAAEACDEYLEHQLRDMDVARLAVTTQIASMVQENYAALVGGMRQVQAVDLDLARAGVQISNGRRGLQRSLARSTGPVLRLIETGRRRDRLRLVEAVTASCLKAVAEEGRVEGDLAAGRFTQAVATAELLAETVAGDEQLSSVAVLGGVRERAENILATVKTRAELAVSELCQTFSPEAYGGIVEAFLLLEDRGALRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAVGATSAGEGEKPPGRRRRQWISQGLAN 394
            + VPWAVIKVRSETEIIRCLDPRFFVE                                                                           + DVARLAVTTQIASMVQENYAALVGGMRQVQAVDLDLARAGVQISNGRRGLQRSLARSTGPVLRLIETGRRRDRLRLVEAVTASCLKAVAEEGRVEGDLAAGRFTQAVATAELLAETVAGDEQLSS AVLGGVRERAENILATVKTRAELAVSELCQTFSPEAYGGIVEAFLLLEDRGALRP  XXXX                                             GVA GATSAGEGEKPP RRRRQWISQ   N
Sbjct:   22 KQVPWAVIKVRSETEIIRCLDPRFFVEG--------------------------------------------------------------------------EKDVARLAVTTQIASMVQENYAALVGGMRQVQAVDLDLARAGVQISNGRRGLQRSLARSTGPVLRLIETGRRRDRLRLVEAVTASCLKAVAEEGRVEGDLAAGRFTQAVATAELLAETVAGDEQLSSAAVLGGVRERAENILATVKTRAELAVSELCQTFSPEAYGGIVEAFLLLEDRGALRPPPXXXXSTEPLIPAAPAASRAPPGEEGEVGPTAGEHDKGDGDNDAGAP---GVAAGATSAGEGEKPPERRRRQWISQFTVN 310          
BLAST of mRNA_E-siliculosus-1a_M_contig89.16904.1 vs. uniprot
Match: A0A836CNI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.960e-29
Identity = 263/815 (32.27%), Postives = 341/815 (41.84%), Query Frame = 0
Query:   31 VPWAVIKVRSETEIIRCLDPRFFVEDFDPVTKILDDLPELGHSSFSLSAAGEAGGRGGKNSAGXXXXXXXXXXXXXXXXXXXXXGAAAEACDEYLEHQLRDMDVARLAVTTQIASMVQENYAALVGGMRQ--------------------------------VQAVDLDLARAGVQISNGRRGLQRSLARSTGPVLRLIETGRRRDRLRLVEAVTASCLKAVAEEGRVEGDLAAGRFTQAVATAELLAETVA--GDEQLSSVAVLGGVRERAENILATVKTRAELAVSELCQTFSPEAYGGIVEAFLLLEDRGALRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAVGATSAGEGEKP-PGRRRRQWI---SQGLANCALPLPRHLLLASNGNXXXXXXXXXXXXXXXXXXXXXXXXX----------------DGVAL---PRHKLWDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE----------------------------GVDAAVVVLDARTG----MEMLSDHVFACFVEEFNRLLSDAIFEALVADQGLGAPERRRRG-------------SRRAFEPPPP------------------------LF--LPAPQLLDGIVQICHGAAELLHTHFCCTQWHFSAFDDRLEDDAFLHAADTLVANSXXXXXXXXXXXXXXXGVGGDGVLGQDRPSSSAPTLESGESDPRIEALRRGLVRQRGALWEEIETKMIMLLSEATVGGGALELEDLAGVVGAVGLLASLGDEF 717
            VP+AVIK+RSE E++  LD RF+   FDPV +++D++P           AG AG                                     D+Y+E +LRD D+AR A+T  +A  +Q NYAAL  GM+Q                                VQAVD DL  AGVQ ++ RR L+ +  R +G +L+ +    RR+R   + A TA+                 GRF  A+  A  L   +A  G   L  +A LGG+RER+  +L  V+ + E   +  C+ FS   Y  +V A++LLE  GAL  XXXXXXXXXXXXX                                      G               PGR    +    S+G ++        LL A+    XXXXXXXXXXXXXXX                         DG A    P     D       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                             GV     + +   G    + +L+ H+     EE +R ++DA+ EA    +G  A E                  S     P  P                        LF  LP+  LL  +V  C G AELLH+H+   Q+  + FD+R EDD +LH        S      XXXXXXXXX             ++ A  LE     P +  LR  L RQRGALW  +E +++ LL  A V GG L+LED  G++GA  +LA LG+EF
Sbjct:  342 VPFAVIKLRSEGEVVGALDARFYDAHFDPVLQVIDEMP-----------AGAAG-----------------------------------LLDQYIERELRDKDLAREAITRALAGKIQANYAALAEGMKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQAVDSDLTTAGVQAASARRRLRNAADRGSGGILQALRLHTRRERGAALLAATAATXXXXXXXXXXXXXXXXGRFALAMDMAAELRRALAARGAGGLRDIAALGGLRERSAGVLPRVRAQVEATAAATCRRFSAAEYAVVVRAYVLLEAAGALAXXXXXXXXXXXXXXRAKGAAVAALAAATFKVLPAGPSKEPTLSAVLAEAAARGXXXXXXXXXXXXXXXPGRALNDFEEDESEGGSDADGEDGAPLLTAARAGSXXXXXXXXXXXXXXXAEDFFSFAVPESTDAWPEGWGQMEPDGKAAGDAPTDAASDDSDNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPQSALGVAVRAALTEPTAGPGRGLALLARHIERVMREEVDRQIADAVQEATRVAEGAPAAEAAEHXXXXXXXXXXFDGVSSAHGSPEGPXXXXXXXXXXXXXXXXXSGGSLEALFARLPSAALLPALVGACRGCAELLHSHYLMLQYLRAPFDERAEDDEWLHRCAIGAPESLPASRQXXXXXXXXXXXXXXXXXXXXGDATDAAALE-----PHLHQLRERLWRQRGALWGAVEERVVALLDAACVDGGGLKLEDFVGLLGAAEMLACLGEEF 1105          
BLAST of mRNA_E-siliculosus-1a_M_contig89.16904.1 vs. uniprot
Match: W7TPS4_9STRA (Vacuolar protein sorting-associated protein 54 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPS4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 9.420e-5
Identity = 49/194 (25.26%), Postives = 89/194 (45.88%), Query Frame = 0
Query:  124 YLEHQLRDMDVARLAVTTQIASMVQENYAALVGGMRQVQAVDLDLARAGVQISNGRRGLQRSLARSTGPVLRLIETGRRRDRLRLVEAVTASCLKAVAEEGRVEGDLAAGRFTQAVATAELLAETVAGDEQLSSVAVLGGVRERAENILATVKTRAELAVSELCQT--------FSPEAYGGIVEAFLLLEDRG 309
            ++E +LR+ D++++ V T++A+ V+ NY  L+ GM+ V  +DL L    +Q    RR L         P L +++   RR+ L+ ++ V       +  +   +  L +  + +AVA A   A+     + L  V +LG   +    +L  V+   +  +  LC          FS E Y  I+ A+  L+  G
Sbjct:  238 FVERELREKDMSKVCVITELATRVEANYQVLIQGMKNVHEIDLYLKSTSMQTWECRRRLNLMDCSIRKPFLAILQKSIRRENLKRIQHVLKRTRTVLILQSETKTALKSELYQRAVAAATN-AKLALDSDVLKGVTMLGTSTQALNKLLPEVRLAVDRRLRHLCSIRSDSSAAIFSTE-YAWILRAYNRLDAHG 429          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16904.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3W7_ECTSI1.550e-11963.93Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CNI9_9STRA2.960e-2932.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TPS4_9STRA9.420e-525.26Vacuolar protein sorting-associated protein 54 n=1... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019515Vacuolar protein sorting-associated protein 54, N-terminalPFAMPF10475Vps54_Ncoord: 120..308
e-value: 1.3E-13
score: 50.9
IPR040047SyndetinPANTHERPTHR13258UNCHARACTERIZEDcoord: 12..308

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig89contigE-siliculosus-1a_M_contig89:551361..559427 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig89.16904.1mRNA_E-siliculosus-1a_M_contig89.16904.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig89 551359..559427 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig89.16904.1 ID=prot_E-siliculosus-1a_M_contig89.16904.1|Name=mRNA_E-siliculosus-1a_M_contig89.16904.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=768bp
GAAAVSAPLQQLARVSTDAGDGDDSDSDRDVPWAVIKVRSETEIIRCLDP
RFFVEDFDPVTKILDDLPELGHSSFSLSAAGEAGGRGGKNSAGGGSGSVS
PSSSSSSAVAAAALGAAAEACDEYLEHQLRDMDVARLAVTTQIASMVQEN
YAALVGGMRQVQAVDLDLARAGVQISNGRRGLQRSLARSTGPVLRLIETG
RRRDRLRLVEAVTASCLKAVAEEGRVEGDLAAGRFTQAVATAELLAETVA
GDEQLSSVAVLGGVRERAENILATVKTRAELAVSELCQTFSPEAYGGIVE
AFLLLEDRGALRPPPPPPTSAEPLIPAAPTATRAPPGEEGGVGPTAGEHH
SGDGGDDDDDAGAAGVAVGATSAGEGEKPPGRRRRQWISQGLANCALPLP
RHLLLASNGNGSDDGGGGGGSVAVVARAGGAAAAADGVALPRHKLWDGGG
GGGGNRSSSSNSSSSTTVAEGGFPTEGGGMSSVSADGGGGEGVDAAVVVL
DARTGMEMLSDHVFACFVEEFNRLLSDAIFEALVADQGLGAPERRRRGSR
RAFEPPPPLFLPAPQLLDGIVQICHGAAELLHTHFCCTQWHFSAFDDRLE
DDAFLHAADTLVANSNSNSASSSSSNSGSGGVGGDGVLGQDRPSSSAPTL
ESGESDPRIEALRRGLVRQRGALWEEIETKMIMLLSEATVGGGALELEDL
AGVVGAVGLLASLGDEFVGGGDDSSGSSSRGGANSTQEQQQQQQQSGSST
STATTPAASSERDGGGGG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040047VPS50
IPR019515VPS54_N