mRNA_E-siliculosus-1a_M_contig89.16869.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig89.16869.1
Unique NamemRNA_E-siliculosus-1a_M_contig89.16869.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16869.1 vs. uniprot
Match: D8LSL4_ECTSI (Ion channel nompc n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL4_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 7.600e-59
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 MEGDAESIGLLLEAAPSTVNRATKGGMTPLCVACEFGEAQAVSCLLSAGATSEGIACPLATATANGHESVVRVLLGTKERIEAFGGVDKLPSALCHAVQKHTSCAILHVLLS 336
            MEGD ESI LLLEAAPST+NRATKGGMTPLCVACEFG+AQ VS LLSA ATS+ + CPLATATANGHESVVRVLLGTKERI+AFGGVDKLPSALCHAVQKH SCAIL VLLS
Sbjct:    1 MEGDTESITLLLEAAPSTMNRATKGGMTPLCVACEFGQAQVVSRLLSAEATSKWMPCPLATATANGHESVVRVLLGTKERIKAFGGVDKLPSALCHAVQKHNSCAILLVLLS 112
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16869.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.530e-12
Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:   22 IGLLLEAAPSTVNRATKGGMTPLCVACEFGEAQAVSCLLSAGA-----TSEGIACPLATATANGHESVVRVLLGTKERIEAFGGVDKLPSALCHAVQKHTSCA-ILHVLLS 336
            I +LL+ AP+T+NRAT  G+TPL  A   G+ +AVS LLSAGA     ++E   CPL  A    H+ VVRVLL T   ++A GG D +P A+  A       A I+ +LLS
Sbjct:  278 IDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLL-TDRGMKAIGGADVIPRAVGAAASARKGRASIVRMLLS 387
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16869.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.620e-11
Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:   22 IGLLLEAAPSTVNRATKGGMTPLCVACEFGEAQAVSCLLSAGA-----TSEGIACPLATATANGHESVVRVLLGTKERIEAFGGVDKLPSALCHAVQKHTSCA-ILHVLLS 336
            I +LL+ AP+T+NRAT  G+TPL  A   G+ +AVS LLSAGA     ++E   CPL  A    H+ VVRVLL T   +EA  G D +P A+  A       A I+ +LLS
Sbjct:  286 IDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLL-TDRGMEAIDGPDVIPRAVGAAASARKGRASIVRMLLS 395
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BLAST of mRNA_E-siliculosus-1a_M_contig89.16869.1 vs. uniprot
Match: D7FVH7_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH7_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.920e-7
Identity = 41/106 (38.68%), Postives = 55/106 (51.89%), Query Frame = 1 
Query:    7 GDAESIGLLLEAAPSTVNRATKGGMTPLCVACEFGEAQAVSCLLSAGATSEGIA-----CPLATATANGHESVVRVLLGTKERIEAFGGVDKLPSALCHAVQKHTS 309
            G   +I  +L  AP+TVN+    G TPL +A  FG+ +AVS LLSAGA    ++     CPL  A       VVRVLL   + + A GG   LP A  +  ++  S
Sbjct:  114 GRIRTIQTILSVAPTTVNQVAPDGSTPLYMASGFGQYEAVSLLLSAGAKQTRLSFEKGKCPLDVAVRQNRTDVVRVLLS--DGLHAIGGSLVLPQATSYLRRREES 217
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig89.16869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSL4_ECTSI7.600e-5987.50Ion channel nompc n=1 Tax=Ectocarpus siliculosus T... [more]
D8LSK8_ECTSI5.530e-1245.05Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JSC7_9PHAE2.620e-1145.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVH7_ECTSI1.920e-738.68Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig89contigE-siliculosus-1a_M_contig89:142747..143082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size336
Model size336
Exons1
Ec32 orthologEc-09_002070.1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
KEGG Pathwayko04624,ko05205,map04624,map05205
KEGG koko:K10380
Seed eggNOG ortholog2880.D8LSK8
Seed ortholog evalue2.6e-10
Seed ortholog score71.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936359.2694082-CDS-E-siliculosus-1a_M_contig89:142746..1430821622936359.2694082-CDS-E-siliculosus-1a_M_contig89:142746..143082Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 142747..143082 -
1696251041.962532-CDS-E-siliculosus-1a_M_contig89:142746..1430821696251041.962532-CDS-E-siliculosus-1a_M_contig89:142746..143082Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig89 142747..143082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig89.16869.1prot_E-siliculosus-1a_M_contig89.16869.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig89 142747..143082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig89.16869.1

>prot_E-siliculosus-1a_M_contig89.16869.1 ID=prot_E-siliculosus-1a_M_contig89.16869.1|Name=mRNA_E-siliculosus-1a_M_contig89.16869.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=112bp
MEGDAESIGLLLEAAPSTVNRATKGGMTPLCVACEFGEAQAVSCLLSAGA
TSEGIACPLATATANGHESVVRVLLGTKERIEAFGGVDKLPSALCHAVQK
HTSCAILHVLLS
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mRNA from alignment at E-siliculosus-1a_M_contig89:142747..143082-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig89.16869.1 ID=mRNA_E-siliculosus-1a_M_contig89.16869.1|Name=mRNA_E-siliculosus-1a_M_contig89.16869.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=336bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:142747..143082- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAAGGAGATGCCGAATCGATCGGCTTGCTGCTCGAAGCGGCGCCATC
GACCGTGAATCGTGCCACGAAAGGCGGCATGACGCCCCTGTGCGTGGCTT
GCGAGTTCGGGGAGGCGCAGGCTGTCTCCTGTCTGCTGTCTGCCGGGGCA
ACGAGCGAAGGTATAGCGTGCCCCCTCGCGACCGCCACCGCCAATGGGCA
TGAATCCGTGGTCCGCGTGCTGCTTGGCACCAAGGAACGGATAGAGGCGT
TCGGAGGCGTGGACAAGCTTCCCTCGGCTTTGTGCCACGCTGTCCAGAAA
CATACTTCATGCGCAATCCTGCACGTTTTACTCTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:142747..143082-

>mRNA_E-siliculosus-1a_M_contig89.16869.1 ID=mRNA_E-siliculosus-1a_M_contig89.16869.1|Name=mRNA_E-siliculosus-1a_M_contig89.16869.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:142747..143082- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAAGGAGATGCCGAATCGATCGGCTTGCTGCTCGAAGCGGCGCCATC
GACCGTGAATCGTGCCACGAAAGGCGGCATGACGCCCCTGTGCGTGGCTT
GCGAGTTCGGGGAGGCGCAGGCTGTCTCCTGTCTGCTGTCTGCCGGGGCA
ACGAGCGAAGGTATAGCGTGCCCCCTCGCGACCGCCACCGCCAATGGGCA
TGAATCCGTGGTCCGCGTGCTGCTTGGCACCAAGGAACGGATAGAGGCGT
TCGGAGGCGTGGACAAGCTTCCCTCGGCTTTGTGCCACGCTGTCCAGAAA
CATACTTCATGCGCAATCCTGCACGTTTTACTCTCGATGGAAGGAGATGC
CGAATCGATCGGCTTGCTGCTCGAAGCGGCGCCATCGACCGTGAATCGTG
CCACGAAAGGCGGCATGACGCCCCTGTGCGTGGCTTGCGAGTTCGGGGAG
GCGCAGGCTGTCTCCTGTCTGCTGTCTGCCGGGGCAACGAGCGAAGGTAT
AGCGTGCCCCCTCGCGACCGCCACCGCCAATGGGCATGAATCCGTGGTCC
GCGTGCTGCTTGGCACCAAGGAACGGATAGAGGCGTTCGGAGGCGTGGAC
AAGCTTCCCTCGGCTTTGTGCCACGCTGTCCAGAAACATACTTCATGCGC
AATCCTGCACGTTTTACTCTCG
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