prot_E-siliculosus-1a_M_contig88.16831.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig88.16831.1
Unique Name	prot_E-siliculosus-1a_M_contig88.16831.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	285

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A6H5JEX9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX9_9PHAE)

HSP 1 Score: 380 bits (975), Expect = 2.830e-131
Identity = 193/195 (98.97%), Postives = 193/195 (98.97%), Query Frame = 0

Query:    1 MSAFAEAPVMEGVASVVAPPVAAVAAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 195
            MSAFAEAP MEGVASVVAPPVAA AAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG
Sbjct:    1 MSAFAEAPGMEGVASVVAPPVAAGAAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 195

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BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: D8LK87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK87_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 9.750e-116
Identity = 177/188 (94.15%), Postives = 177/188 (94.15%), Query Frame = 0

Query:    8 PVMEGVASVVAPPVAAVAAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 195
            P   GVASVVAP        VSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG
Sbjct:   31 PTTAGVASVVAPXXXXXXX-VSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 217

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BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A835ZG94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG94_9STRA)

HSP 1 Score: 246 bits (627), Expect = 2.660e-77
Identity = 114/165 (69.09%), Postives = 136/165 (82.42%), Query Frame = 0

Query:   31 TVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 195
            TVFVGNL+W TT+++LR FM S+G V+S+ VQ HADSGRSKGWGLV Y+    A AAIEQLNNA+LGGR +H+RLDR  ++ SGGF VFVGNLPWSTT EDLQ +FA ++PYD HVKTNMAGRSRGF ILRF+ PE GQ+AI+ M  + ID RPIQVREDR++GG
Sbjct:    8 TVFVGNLAWNTTADELRDFMASVGTVLSSAVQCHADSGRSKGWGLVEYSTDGEAMAAIEQLNNAELGGRAVHVRLDRSNIDTSGGFAVFVGNLPWSTTTEDLQTLFAQFQPYDVHVKTNMAGRSRGFAILRFSAPEPGQQAIAAMNGFDIDGRPIQVREDRDVGG 172

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BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A835YWJ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ3_9STRA)

HSP 1 Score: 236 bits (602), Expect = 1.630e-73
Identity = 113/162 (69.75%), Postives = 128/162 (79.01%), Query Frame = 0

Query:   31 TVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDRE 192
            TVFVGNLSW TTSE+LR FM S GE+VS+EVQ HADSGRSKGWGLV Y+ P  A AAIE LNNADLGGR +H+R DR  +E SGGF VFVGNLPWS TD DL  +FA + P+D HVKTNM GRSRGFGILRF +PE G+ AI  M  ++I+ R IQVREDRE
Sbjct:    8 TVFVGNLSWNTTSEELRDFMASQGEIVSSEVQCHADSGRSKGWGLVQYSTPEEATAAIELLNNADLGGRSVHLRFDRTTIETSGGFAVFVGNLPWSVTDLDLTALFAKFNPFDAHVKTNMTGRSRGFGILRFHSPEEGREAIEAMNGFEIEGRHIQVREDRE 169

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BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A7S2V6P6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6P6_9STRA)

HSP 1 Score: 201 bits (512), Expect = 5.620e-60
Identity = 96/163 (58.90%), Postives = 118/163 (72.39%), Query Frame = 0

Query:   31 TVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREI 193
            TVFVGNL W TT+E+L+ FM   G VVSA+VQ+HADSGRSKGWGLV Y+    A+ AI+ LN+  L  R IH+RLDR  ++ + G  VFVGNLPWSTT E L ++F  YEP+D HVKTNMAGRSRGF ILRF   +    AI++M  Y ++ R IQVREDR +
Sbjct:    7 TVFVGNLKWSTTNEELQEFMSQCGNVVSADVQAHADSGRSKGWGLVEYSTAEEAQNAIQLLNSTTLQERQIHVRLDRSNLDETAGVSVFVGNLPWSTTSETLAELFGSYEPFDVHVKTNMAGRSRGFAILRFNNQDQANAAITDMNGYNLEERNIQVREDRGV 169

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BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A7S2DGC6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGC6_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.220e-57
Identity = 90/165 (54.55%), Postives = 117/165 (70.91%), Query Frame = 0

Query:   31 TVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 195
            T+FVGNLSW TT+E+L  FM + G V S +VQ+HAD+GRSKGW LVTY         I+Q N  +  GR +++R DR ++E   GFPVFVGNLPWSTT EDL  +F  + P+D HVKT MAGRSRGF ILRF + E+ Q+A + M  ++++ R I+VREDR+ GG
Sbjct:   35 TLFVGNLSWATTNEELSEFMANYGTVASCQVQAHADTGRSKGWALVTYTTAEECTYTIQQTNGQEFNGRNLNVRQDRSQMEELSGFPVFVGNLPWSTTSEDLSDLFRDFGPFDVHVKTTMAGRSRGFAILRFESLEVAQQATAAMNGHELEGRSIEVREDRQTGG 199

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BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A6U4FSY9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FSY9_9STRA)

HSP 1 Score: 193 bits (490), Expect = 3.280e-57
Identity = 85/163 (52.15%), Postives = 117/163 (71.78%), Query Frame = 0

Query:   29 SSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDR 191
            ++ +++GNL+W TT E+L  F+GS+GEV++A VQ HADS RSKGWGL TYA P  A  A+ QL+ ++L GRP+H+R DR ++E  GG  +FVGN+PW  T E L + F P++P D HVKTNMAGRSRGF I +F   EL   A+++M   ++  R +QVRED+
Sbjct:    3 NTDIYIGNLTWDTTDEELLEFLGSVGEVLNASVQRHADSQRSKGWGLATYAAPEGAALAVSQLDQSELKGRPVHVRFDRSKIENVGGVNIFVGNIPWEITSEQLYESFFPFQPIDVHVKTNMAGRSRGFAIAKFPNQELADAAVAQMNGKELQGRQLQVREDK 165

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BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A7S2GAK8_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GAK8_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.130e-55
Identity = 91/171 (53.22%), Postives = 120/171 (70.18%), Query Frame = 0

Query:   23 AVAAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREI 193
            A+  P ++T+FVGNL+W TTSEDL+ +  ++G V+S EVQSHAD+GRSKGW LVTY+    A  AI QL+  D   RP+++R+DR  VE  GG  VFVGNLPWSTT+E L ++F  + P+D +VKT M GRSRGF I+RF TPE  + AI  MQ +  + R + VR DR +
Sbjct:   16 AIQVPSTATLFVGNLAWSTTSEDLKKYCAAVGNVLSVEVQSHADTGRSKGWALVTYSTSEEAAVAITQLHGHDFNDRPLNVRVDRSNVEQMGGTLVFVGNLPWSTTNEQLLELFGQFNPFDVNVKTTMNGRSRGFAIVRFDTPERAEVAIGTMQGFIFEGRTLDVRIDRPL 186

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BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: K8YWK2_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWK2_NANGC)

HSP 1 Score: 182 bits (462), Expect = 2.350e-53
Identity = 86/163 (52.76%), Postives = 111/163 (68.10%), Query Frame = 0

Query:   29 SSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDR 191
            S TVFVGNLSWGTT++ L   M + G V+  EVQ+H+D+GRSKGW LVT+     A  A+E L   ++ GRP+++R DR E+E   GF VFVGNLPW  T   L+ +F+ + PYD H+KTNM+GRSRGFG+LRF + E  QRAI +M    +  R I VR DR
Sbjct:    2 SKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR 164

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BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A4D9CR95_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR95_9STRA)

HSP 1 Score: 153 bits (387), Expect = 8.760e-41
Identity = 72/142 (50.70%), Postives = 95/142 (66.90%), Query Frame = 0

Query:   50 MGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDR 191
            M + G V+  EVQ+H+D+GRSKGW LVT+     A  A+E L   ++ GRP+++R DR E+E   GF VFVGNLPW  T   L+ +F+ + PYD H+KTNM+GRSRGFG+LRF + E  QRAI +M    +  R I VR DR
Sbjct:    1 METAGRVLDVEVQAHSDTGRSKGWALVTFEAAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFRPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR 142

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JEX9_9PHAE	2.830e-131	98.97	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
D8LK87_ECTSI	9.750e-116	94.15	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835ZG94_9STRA	2.660e-77	69.09	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YWJ3_9STRA	1.630e-73	69.75	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2V6P6_9STRA	5.620e-60	58.90	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S2DGC6_9STRA	1.220e-57	54.55	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A6U4FSY9_9STRA	3.280e-57	52.15	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7S2GAK8_9STRA	1.130e-55	53.22	Hypothetical protein n=2 Tax=Florenciella parvula ...	[more]
K8YWK2_NANGC	2.350e-53	52.76	Uncharacterized protein n=1 Tax=Nannochloropsis ga...	[more]
A0A4D9CR95_9STRA	8.760e-41	50.70	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 31..104 e-value: 7.7E-23 score: 91.9 coord: 117..188 e-value: 2.9E-20 score: 83.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 118..185 e-value: 4.8E-16 score: 58.3 coord: 32..102 e-value: 2.7E-17 score: 62.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 30..108 score: 16.892
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 116..192 score: 14.573
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 115..237 e-value: 3.0E-20 score: 74.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 18..114 e-value: 6.8E-24 score: 86.6
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 116..232 coord: 28..108
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 115..224
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 25..110

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig88	contig	E-siliculosus-1a_M_contig88:395222..404521 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig88.16831.1	mRNA_E-siliculosus-1a_M_contig88.16831.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig88 395127..404521 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig88.16831.1 ID=prot_E-siliculosus-1a_M_contig88.16831.1|Name=mRNA_E-siliculosus-1a_M_contig88.16831.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=285bp
MSAFAEAPVMEGVASVVAPPVAAVAAPVSSTVFVGNLSWGTTSEDLRTFM
GSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRP
IHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNM
AGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGGGGEGG
GGGGGGGRRGRGSSGGGGGGGGGGGGGGGATEGGAAGTRALSSWATSRGG
LRTTTFLLRSRLRGPWFRRTCKSPRRGAPRDGGL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom