mRNA_E-siliculosus-1a_M_contig88.16831.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A6H5JEX9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX9_9PHAE) HSP 1 Score: 380 bits (975), Expect = 9.230e-131 Identity = 193/195 (98.97%), Postives = 193/195 (98.97%), Query Frame = 1
Query: 1 MSAFAEAPVMEGVASVVAPPVAAVAAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 585
MSAFAEAP MEGVASVVAPPVAA AAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG
Sbjct: 1 MSAFAEAPGMEGVASVVAPPVAAGAAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 195
BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: D8LK87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK87_ECTSI) HSP 1 Score: 346 bits (887), Expect = 3.120e-115 Identity = 177/188 (94.15%), Postives = 177/188 (94.15%), Query Frame = 1
Query: 22 PVMEGVASVVAPPVAAVAAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 585
P GVASVVAP VSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG
Sbjct: 31 PTTAGVASVVAPXXXXXXX-VSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 217
BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A835ZG94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG94_9STRA) HSP 1 Score: 246 bits (627), Expect = 7.770e-77 Identity = 114/165 (69.09%), Postives = 136/165 (82.42%), Query Frame = 1
Query: 91 TVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 585
TVFVGNL+W TT+++LR FM S+G V+S+ VQ HADSGRSKGWGLV Y+ A AAIEQLNNA+LGGR +H+RLDR ++ SGGF VFVGNLPWSTT EDLQ +FA ++PYD HVKTNMAGRSRGF ILRF+ PE GQ+AI+ M + ID RPIQVREDR++GG
Sbjct: 8 TVFVGNLAWNTTADELRDFMASVGTVLSSAVQCHADSGRSKGWGLVEYSTDGEAMAAIEQLNNAELGGRAVHVRLDRSNIDTSGGFAVFVGNLPWSTTTEDLQTLFAQFQPYDVHVKTNMAGRSRGFAILRFSAPEPGQQAIAAMNGFDIDGRPIQVREDRDVGG 172
BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A835YWJ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ3_9STRA) HSP 1 Score: 236 bits (602), Expect = 4.700e-73 Identity = 113/162 (69.75%), Postives = 128/162 (79.01%), Query Frame = 1
Query: 91 TVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDRE 576
TVFVGNLSW TTSE+LR FM S GE+VS+EVQ HADSGRSKGWGLV Y+ P A AAIE LNNADLGGR +H+R DR +E SGGF VFVGNLPWS TD DL +FA + P+D HVKTNM GRSRGFGILRF +PE G+ AI M ++I+ R IQVREDRE
Sbjct: 8 TVFVGNLSWNTTSEELRDFMASQGEIVSSEVQCHADSGRSKGWGLVQYSTPEEATAAIELLNNADLGGRSVHLRFDRTTIETSGGFAVFVGNLPWSVTDLDLTALFAKFNPFDAHVKTNMTGRSRGFGILRFHSPEEGREAIEAMNGFEIEGRHIQVREDRE 169
BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A7S2V6P6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6P6_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.530e-59 Identity = 96/163 (58.90%), Postives = 118/163 (72.39%), Query Frame = 1
Query: 91 TVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREI 579
TVFVGNL W TT+E+L+ FM G VVSA+VQ+HADSGRSKGWGLV Y+ A+ AI+ LN+ L R IH+RLDR ++ + G VFVGNLPWSTT E L ++F YEP+D HVKTNMAGRSRGF ILRF + AI++M Y ++ R IQVREDR +
Sbjct: 7 TVFVGNLKWSTTNEELQEFMSQCGNVVSADVQAHADSGRSKGWGLVEYSTAEEAQNAIQLLNSTTLQERQIHVRLDRSNLDETAGVSVFVGNLPWSTTSETLAELFGSYEPFDVHVKTNMAGRSRGFAILRFNNQDQANAAITDMNGYNLEERNIQVREDRGV 169
BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A7S2DGC6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGC6_9STRA) HSP 1 Score: 196 bits (498), Expect = 3.290e-57 Identity = 90/165 (54.55%), Postives = 117/165 (70.91%), Query Frame = 1
Query: 91 TVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGG 585
T+FVGNLSW TT+E+L FM + G V S +VQ+HAD+GRSKGW LVTY I+Q N + GR +++R DR ++E GFPVFVGNLPWSTT EDL +F + P+D HVKT MAGRSRGF ILRF + E+ Q+A + M ++++ R I+VREDR+ GG
Sbjct: 35 TLFVGNLSWATTNEELSEFMANYGTVASCQVQAHADTGRSKGWALVTYTTAEECTYTIQQTNGQEFNGRNLNVRQDRSQMEELSGFPVFVGNLPWSTTSEDLSDLFRDFGPFDVHVKTTMAGRSRGFAILRFESLEVAQQATAAMNGHELEGRSIEVREDRQTGG 199
BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A6U4FSY9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FSY9_9STRA) HSP 1 Score: 193 bits (490), Expect = 8.780e-57 Identity = 85/163 (52.15%), Postives = 117/163 (71.78%), Query Frame = 1
Query: 85 SSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDR 573
++ +++GNL+W TT E+L F+GS+GEV++A VQ HADS RSKGWGL TYA P A A+ QL+ ++L GRP+H+R DR ++E GG +FVGN+PW T E L + F P++P D HVKTNMAGRSRGF I +F EL A+++M ++ R +QVRED+
Sbjct: 3 NTDIYIGNLTWDTTDEELLEFLGSVGEVLNASVQRHADSQRSKGWGLATYAAPEGAALAVSQLDQSELKGRPVHVRFDRSKIENVGGVNIFVGNIPWEITSEQLYESFFPFQPIDVHVKTNMAGRSRGFAIAKFPNQELADAAVAQMNGKELQGRQLQVREDK 165
BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A7S2GAK8_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GAK8_9STRA) HSP 1 Score: 190 bits (483), Expect = 3.000e-55 Identity = 91/171 (53.22%), Postives = 120/171 (70.18%), Query Frame = 1
Query: 67 AVAAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREI 579
A+ P ++T+FVGNL+W TTSEDL+ + ++G V+S EVQSHAD+GRSKGW LVTY+ A AI QL+ D RP+++R+DR VE GG VFVGNLPWSTT+E L ++F + P+D +VKT M GRSRGF I+RF TPE + AI MQ + + R + VR DR +
Sbjct: 16 AIQVPSTATLFVGNLAWSTTSEDLKKYCAAVGNVLSVEVQSHADTGRSKGWALVTYSTSEEAAVAITQLHGHDFNDRPLNVRVDRSNVEQMGGTLVFVGNLPWSTTNEQLLELFGQFNPFDVNVKTTMNGRSRGFAIVRFDTPERAEVAIGTMQGFIFEGRTLDVRIDRPL 186
BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: K8YWK2_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWK2_NANGC) HSP 1 Score: 182 bits (462), Expect = 6.150e-53 Identity = 86/163 (52.76%), Postives = 111/163 (68.10%), Query Frame = 1
Query: 85 SSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDR 573
S TVFVGNLSWGTT++ L M + G V+ EVQ+H+D+GRSKGW LVT+ A A+E L ++ GRP+++R DR E+E GF VFVGNLPW T L+ +F+ + PYD H+KTNM+GRSRGFG+LRF + E QRAI +M + R I VR DR
Sbjct: 2 SKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR 164
BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Match: A0A4D9CR95_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR95_9STRA) HSP 1 Score: 153 bits (387), Expect = 2.120e-40 Identity = 72/142 (50.70%), Postives = 95/142 (66.90%), Query Frame = 1
Query: 148 MGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDR 573
M + G V+ EVQ+H+D+GRSKGW LVT+ A A+E L ++ GRP+++R DR E+E GF VFVGNLPW T L+ +F+ + PYD H+KTNM+GRSRGFG+LRF + E QRAI +M + R I VR DR
Sbjct: 1 METAGRVLDVEVQAHSDTGRSKGWALVTFEAAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFRPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR 142 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig88.16831.1 >prot_E-siliculosus-1a_M_contig88.16831.1 ID=prot_E-siliculosus-1a_M_contig88.16831.1|Name=mRNA_E-siliculosus-1a_M_contig88.16831.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=285bp MSAFAEAPVMEGVASVVAPPVAAVAAPVSSTVFVGNLSWGTTSEDLRTFMback to top mRNA from alignment at E-siliculosus-1a_M_contig88:395127..404521- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig88.16831.1 ID=mRNA_E-siliculosus-1a_M_contig88.16831.1|Name=mRNA_E-siliculosus-1a_M_contig88.16831.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9395bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:395127..404521- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:395127..404521- >mRNA_E-siliculosus-1a_M_contig88.16831.1 ID=mRNA_E-siliculosus-1a_M_contig88.16831.1|Name=mRNA_E-siliculosus-1a_M_contig88.16831.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1710bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:395127..404521- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |