mRNA_E-siliculosus-1a_M_contig88.16819.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16819.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16819.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16819.1 vs. uniprot
Match: A0A6H5J7N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N1_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 4.100e-77
Identity = 176/208 (84.62%), Postives = 180/208 (86.54%), Query Frame = 3 
Query:    3 IAMATDQEEGNGSLPAPSXXXXXXXXXXXXXXXXXXXAGSLHSDSTFQRSRSDGNVSAIAXXXXXXPPYQQHDGLFRGGSNSGIQRRGVSSSSNATGAVADGRPRRRGVSLGGGGXXXXXXXXD---GGMRSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSETRSEF 617
            I MATD+E GNG+LPAPS XXXXXXXXXXXXXX    AGSLHSD TFQRSRSDG+VSAIA      P YQQHDGLFRGGSN GIQRR V SSSNATGA A GRPRRRGVSL    XXXXXXXX    GGMRSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSETR+EF
Sbjct:  183 IVMATDREVGNGNLPAPSSXXXXXXXXXXXXXXAPV-AGSLHSDYTFQRSRSDGHVSAIATAAAAAP-YQQHDGLFRGGSNRGIQRRDVGSSSNATGAGAXGRPRRRGVSLXXXXXXXXXXXXXXXXGGMRSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSETRNEF 388
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7N1_9PHAE4.100e-7784.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:317149..317765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size609
Model size619
Exons1
Ec32 orthologEc-16_002360.2
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936342.2996986-UTR-E-siliculosus-1a_M_contig88:317148..3171561622936342.2996986-UTR-E-siliculosus-1a_M_contig88:317148..317156Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 317149..317156 +
1696251034.1989405-UTR-E-siliculosus-1a_M_contig88:317148..3171561696251034.1989405-UTR-E-siliculosus-1a_M_contig88:317148..317156Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig88 317149..317156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936342.317251-CDS-E-siliculosus-1a_M_contig88:317156..3177651622936342.317251-CDS-E-siliculosus-1a_M_contig88:317156..317765Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 317157..317765 +
1696251034.2136672-CDS-E-siliculosus-1a_M_contig88:317156..3177651696251034.2136672-CDS-E-siliculosus-1a_M_contig88:317156..317765Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 317157..317765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16819.1prot_E-siliculosus-1a_M_contig88.16819.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 317157..317765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16819.1

>prot_E-siliculosus-1a_M_contig88.16819.1 ID=prot_E-siliculosus-1a_M_contig88.16819.1|Name=mRNA_E-siliculosus-1a_M_contig88.16819.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=203bp
MATDQEEGNGSLPAPSPPSSSSLSSPSAAAAAALAAGSLHSDSTFQRSRS
DGNVSAIAAAAAAAPPYQQHDGLFRGGSNSGIQRRGVSSSSNATGAVADG
RPRRRGVSLGGGGGGGGASGGDGGMRSGLSRKFVRSLMRHLNMRADSRQR
EELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSETR
SEF
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mRNA from alignment at E-siliculosus-1a_M_contig88:317149..317765+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16819.1 ID=mRNA_E-siliculosus-1a_M_contig88.16819.1|Name=mRNA_E-siliculosus-1a_M_contig88.16819.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=617bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:317149..317765+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TGATCGCCATGGCCACGGACCAGGAAGAGGGCAATGGTAGCCTGCCTGCG
CCCTCGCCGCCCTCCTCTTCCTCCCTGTCGTCGCCAAGCGCCGCCGCCGC
CGCCGCCCTCGCCGCCGGCTCTCTTCACAGCGACTCCACGTTTCAGAGGA
GTCGAAGCGACGGCAACGTCAGCGCAATCGCGGCAGCGGCGGCGGCGGCG
CCGCCGTACCAGCAACACGACGGCTTATTCCGCGGGGGGAGCAACAGCGG
CATACAGAGAAGGGGTGTCAGTAGCAGCAGCAACGCCACCGGCGCCGTTG
CAGATGGCAGGCCTAGAAGGCGTGGTGTATCGCTCGGCGGCGGCGGCGGC
GGCGGCGGTGCTAGTGGCGGCGACGGCGGCATGCGGTCGGGCCTCTCCCG
AAAGTTCGTGCGCAGCCTGATGCGCCACCTCAACATGCGGGCGGACTCCC
GCCAGCGGGAGGAGCTCCGGTCCATGGTTGAGACGCTCAAGCACCGGAGC
TCGGTTAGGGGGGTCGACATGAAGCAGGAGATAAAGCGCGAGGCCGTGTC
GCTCCTCGGCCCGGAGCTCGCGCGCGAGGCCTTCGAGGCCTCGCTCTCGG
AGACCCGCAGCGAGTTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:317149..317765+

>mRNA_E-siliculosus-1a_M_contig88.16819.1 ID=mRNA_E-siliculosus-1a_M_contig88.16819.1|Name=mRNA_E-siliculosus-1a_M_contig88.16819.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1218bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:317149..317765+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCACGGACCAGGAAGAGGGCAATGGTAGCCTGCCTGCGCCCTCGCC
GCCCTCCTCTTCCTCCCTGTCGTCGCCAAGCGCCGCCGCCGCCGCCGCCC
TCGCCGCCGGCTCTCTTCACAGCGACTCCACGTTTCAGAGGAGTCGAAGC
GACGGCAACGTCAGCGCAATCGCGGCAGCGGCGGCGGCGGCGCCGCCGTA
CCAGCAACACGACGGCTTATTCCGCGGGGGGAGCAACAGCGGCATACAGA
GAAGGGGTGTCAGTAGCAGCAGCAACGCCACCGGCGCCGTTGCAGATGGC
AGGCCTAGAAGGCGTGGTGTATCGCTCGGCGGCGGCGGCGGCGGCGGCGG
TGCTAGTGGCGGCGACGGCGGCATGCGGTCGGGCCTCTCCCGAAAGTTCG
TGCGCAGCCTGATGCGCCACCTCAACATGCGGGCGGACTCCCGCCAGCGG
GAGGAGCTCCGGTCCATGGTTGAGACGCTCAAGCACCGGAGCTCGGTTAG
GGGGGTCGACATGAAGCAGGAGATAAAGCGCGAGGCCGTGTCGCTCCTCG
GCCCGGAGCTCGCGCGCGAGGCCTTCGAGGCCTCGCTCTCGGAGACCCGC
AGCGAGTTCATGGCCACGGACCAGGAAGAGGGCAATGGTAGCCTGCCTGC
GCCCTCGCCGCCCTCCTCTTCCTCCCTGTCGTCGCCAAGCGCCGCCGCCG
CCGCCGCCCTCGCCGCCGGCTCTCTTCACAGCGACTCCACGTTTCAGAGG
AGTCGAAGCGACGGCAACGTCAGCGCAATCGCGGCAGCGGCGGCGGCGGC
GCCGCCGTACCAGCAACACGACGGCTTATTCCGCGGGGGGAGCAACAGCG
GCATACAGAGAAGGGGTGTCAGTAGCAGCAGCAACGCCACCGGCGCCGTT
GCAGATGGCAGGCCTAGAAGGCGTGGTGTATCGCTCGGCGGCGGCGGCGG
CGGCGGCGGTGCTAGTGGCGGCGACGGCGGCATGCGGTCGGGCCTCTCCC
GAAAGTTCGTGCGCAGCCTGATGCGCCACCTCAACATGCGGGCGGACTCC
CGCCAGCGGGAGGAGCTCCGGTCCATGGTTGAGACGCTCAAGCACCGGAG
CTCGGTTAGGGGGGTCGACATGAAGCAGGAGATAAAGCGCGAGGCCGTGT
CGCTCCTCGGCCCGGAGCTCGCGCGCGAGGCCTTCGAGGCCTCGCTCTCG
GAGACCCGCAGCGAGTTC
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