mRNA_E-siliculosus-1a_M_contig879.16787.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig879.16787.1
Unique NamemRNA_E-siliculosus-1a_M_contig879.16787.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig879.16787.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 2.240e-108
Identity = 234/290 (80.69%), Postives = 246/290 (84.83%), Query Frame = 1 
Query:    1 GNHDFCSKECLGSDKYVMPQDDPDGEMLLNTPSEGVDIFEEATG---GGAGDNERETGGAWGEERAGRDEAGEGSSEESDDEDALHADLVETRGAGVTSEGTLDESSKGGGVAGVPSKGAPKVTLGGCVKSAQTVPSLLKTLEICKELYARKKETFHHAFQQTTQARSDAFDRGSAESGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPEGFAAFGRLLEAIRLVEDICLEGRRVVEDTLEAVDDEVLALTKIKSKVQRRKQRTPTPSLRLPEEL 861
            GN DF S+ECLGSDKYVMP+DDPDGEMLLNTPSEGVD FEEATG   GGAGDNERE GG  GEERAGRDEAGEGSSEESDD+DALHA LVE+ GAGV  + TLDES +GGGVAGV SKGAPKVTLG CVKSAQTVPSLLKTLE+CK LY RKKETFHHAFQQT QAR+DAFDRG AES A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                RLLEAIRLVE +CLEGR+VV+DTLEAVDD VL LTKIKSKVQR+KQ  PTPSLRLPEEL
Sbjct:  126 GNRDFVSEECLGSDKYVMPRDDPDGEMLLNTPSEGVDFFEEATGAGGGGAGDNEREIGGEQGEERAGRDEAGEGSSEESDDDDALHAGLVESGGAGVKGDVTLDESPQGGGVAGVSSKGAPKVTLGDCVKSAQTVPSLLKTLEVCKVLYVRKKETFHHAFQQTRQARNDAFDRGPAESWASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------RLLEAIRLVETVCLEGRQVVDDTLEAVDDGVLELTKIKSKVQRQKQSIPTPSLRLPEEL 399
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BLAST of mRNA_E-siliculosus-1a_M_contig879.16787.1 vs. uniprot
Match: A0A6H5JYT6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT6_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 4.470e-104
Identity = 217/273 (79.49%), Postives = 228/273 (83.52%), Query Frame = 1 
Query:   52 MPQDDPDGEMLLNTPSEGVDIFEEATG---GGAGDNERETGGAWGEERAGRDEAGEGSSEESDDEDALHADLVETRGAGVTSEGTLDESSKGGGVAGVPSKGAPKVTLGGCVKSAQTVPSLLKTLEICKELYARKKETFHHAFQQTTQARSDAFDRGSAESGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPEGFAAFGRLLEAIRLVEDICLEGRRVVEDTLEAVDDEVLALTKIKSKVQRRKQRTPTPSLRLPEEL 861
            MP+DDPDGEMLLNTPSEGVD FEEATG   GGAGDNERE GG  GEERAGRDEAGEGSSEESDD+DALHA LVE+ GAGV  + TLDES +GGGVAGV SKGAPKVTLG CVKSAQTVPSLLKTLE+CK LY RKKETFHHAFQQT QAR+DAFDRG AESGA XXXXXXXXXXXXXXXXXXXXXXXXXXX                   AAFGRLLEAI LVE +CLEGR+VV+DTLEAVDD VL LTKIKSKVQR+KQ  PTPSLRLPEEL
Sbjct:    1 MPRDDPDGEMLLNTPSEGVDFFEEATGAGGGGAGDNEREIGGEQGEERAGRDEAGEGSSEESDDDDALHAGLVESGGAGVKGDVTLDESPQGGGVAGVSSKGAPKVTLGDCVKSAQTVPSLLKTLEVCKVLYVRKKETFHHAFQQTRQARNDAFDRGPAESGASXXXXXXXXXXXXXXXXXXXXXXXXXXXGVS----------------AAFGRLLEAIHLVETVCLEGRQVVDDTLEAVDDGVLELTKIKSKVQRQKQSIPTPSLRLPEEL 257
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig879.16787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX32_9PHAE2.240e-10880.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT6_9PHAE4.470e-10479.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig879contigE-siliculosus-1a_M_contig879:800..1794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size861
Model size864
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936341.417273-CDS-E-siliculosus-1a_M_contig879:801..8731622936341.417273-CDS-E-siliculosus-1a_M_contig879:801..873Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig879 802..873 -
1696251033.8327954-CDS-E-siliculosus-1a_M_contig879:801..8731696251033.8327954-CDS-E-siliculosus-1a_M_contig879:801..873Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig879 802..873 -
1622936341.43665-CDS-E-siliculosus-1a_M_contig879:1005..17941622936341.43665-CDS-E-siliculosus-1a_M_contig879:1005..1794Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig879 1006..1794 -
1696251033.8440785-CDS-E-siliculosus-1a_M_contig879:1005..17941696251033.8440785-CDS-E-siliculosus-1a_M_contig879:1005..1794Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig879 1006..1794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig879.16787.1prot_E-siliculosus-1a_M_contig879.16787.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig879 802..1794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig879.16787.1

>prot_E-siliculosus-1a_M_contig879.16787.1 ID=prot_E-siliculosus-1a_M_contig879.16787.1|Name=mRNA_E-siliculosus-1a_M_contig879.16787.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=287bp
GNHDFCSKECLGSDKYVMPQDDPDGEMLLNTPSEGVDIFEEATGGGAGDN
ERETGGAWGEERAGRDEAGEGSSEESDDEDALHADLVETRGAGVTSEGTL
DESSKGGGVAGVPSKGAPKVTLGGCVKSAQTVPSLLKTLEICKELYARKK
ETFHHAFQQTTQARSDAFDRGSAESGASAAAGASASGGDTTAGGDTPAAG
ASAGAGASAAAGASAGAGDSPEGFAAFGRLLEAIRLVEDICLEGRRVVED
TLEAVDDEVLALTKIKSKVQRRKQRTPTPSLRLPEEL
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mRNA from alignment at E-siliculosus-1a_M_contig879:800..1794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig879.16787.1 ID=mRNA_E-siliculosus-1a_M_contig879.16787.1|Name=mRNA_E-siliculosus-1a_M_contig879.16787.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=995bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig879:800..1794- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTAATCATGACTTCTGCTCGAAGGAGTGCCTCGGCTCCGACAAGTACGT
GATGCCCCAGGACGACCCCGATGGCGAGATGCTGTTAAACACACCTTCGG
AAGGGGTTGACATCTTCGAGGAGGCCACGGGGGGTGGAGCGGGTGACAAC
GAGAGGGAGACTGGGGGTGCATGGGGCGAGGAGAGGGCCGGTCGCGACGA
GGCGGGGGAGGGGAGCAGCGAGGAGTCCGACGATGAAGACGCCCTGCACG
CCGACTTAGTAGAGACAAGGGGGGCAGGTGTGACAAGTGAGGGGACACTC
GACGAGAGTTCGAAAGGTGGGGGGGTTGCCGGGGTACCAAGCAAGGGTGC
CCCCAAGGTTACCCTCGGAGGGTGCGTCAAGTCGGCGCAGACCGTACCCA
GTCTCTTGAAGACACTAGAAATTTGCAAGGAGCTGTATGCCAGGAAGAAG
GAGACGTTCCACCACGCGTTCCAGCAAACTACGCAGGCTAGGAGTGATGC
TTTTGACCGGGGGTCAGCAGAGTCTGGGGCTTCTGCAGCGGCTGGGGCTT
CTGCATCGGGTGGGGATACCACAGCGGGTGGGGATACGCCAGCGGCTGGG
GCTTCTGCAGGGGCTGGGGCTTCTGCAGCGGCTGGGGCTTCGGCAGGGGC
TGGGGATTCGCCAGAGGGTTTCGCGGCGTTCGGTCGGCTGCTGGAGGCGA
TCCGCCTTGTTGAGGACATATGTCTCGAGGGCCGGCGGGTCGTCGAAGAC
ACGCTCGAGGCAGTGGATGACGAGGTTCTTGCGTTGACGGTAAGACGGTT
TGTTGTCTGCATGGCAAATTTTATTTATTGGGTCGCCAACCGCGCCATTC
AGGCGCAGACAACATTTCTGACAAACGTTGCCGTCTCGTCCTCGTTGCAT
GGTTGCATGGTTGACTTCCAGAAAATCAAGAGCAAGGTACAGCGCCGGAA
GCAGAGGACTCCAACTCCCAGCTTGCGATTGCCGGAGGAGCTTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig879:800..1794-

>mRNA_E-siliculosus-1a_M_contig879.16787.1 ID=mRNA_E-siliculosus-1a_M_contig879.16787.1|Name=mRNA_E-siliculosus-1a_M_contig879.16787.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1722bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig879:800..1794- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTAATCATGACTTCTGCTCGAAGGAGTGCCTCGGCTCCGACAAGTACGT
GATGCCCCAGGACGACCCCGATGGCGAGATGCTGTTAAACACACCTTCGG
AAGGGGTTGACATCTTCGAGGAGGCCACGGGGGGTGGAGCGGGTGACAAC
GAGAGGGAGACTGGGGGTGCATGGGGCGAGGAGAGGGCCGGTCGCGACGA
GGCGGGGGAGGGGAGCAGCGAGGAGTCCGACGATGAAGACGCCCTGCACG
CCGACTTAGTAGAGACAAGGGGGGCAGGTGTGACAAGTGAGGGGACACTC
GACGAGAGTTCGAAAGGTGGGGGGGTTGCCGGGGTACCAAGCAAGGGTGC
CCCCAAGGTTACCCTCGGAGGGTGCGTCAAGTCGGCGCAGACCGTACCCA
GTCTCTTGAAGACACTAGAAATTTGCAAGGAGCTGTATGCCAGGAAGAAG
GAGACGTTCCACCACGCGTTCCAGCAAACTACGCAGGCTAGGAGTGATGC
TTTTGACCGGGGGTCAGCAGAGTCTGGGGCTTCTGCAGCGGCTGGGGCTT
CTGCATCGGGTGGGGATACCACAGCGGGTGGGGATACGCCAGCGGCTGGG
GCTTCTGCAGGGGCTGGGGCTTCTGCAGCGGCTGGGGCTTCGGCAGGGGC
TGGGGATTCGCCAGAGGGTTTCGCGGCGTTCGGTCGGCTGCTGGAGGCGA
TCCGCCTTGTTGAGGACATATGTCTCGAGGGCCGGCGGGTCGTCGAAGAC
ACGCTCGAGGCAGTGGATGACGAGGTTCTTGCGTTGACGGGTAATCATGA
CTTCTGCTCGAAGGAGTGCCTCGGCTCCGACAAGTACGTGATGCCCCAGG
ACGACCCCGATGGCGAGATGCTGTTAAACACACCTTCGGAAGGGGTTGAC
ATCTTCGAGGAGGCCACGGGGGGTGGAGCGGGTGACAACGAGAGGGAGAC
TGGGGGTGCATGGGGCGAGGAGAGGGCCGGTCGCGACGAGGCGGGGGAGG
GGAGCAGCGAGGAGTCCGACGATGAAGACGCCCTGCACGCCGACTTAGTA
GAGACAAGGGGGGCAGGTGTGACAAGTGAGGGGACACTCGACGAGAGTTC
GAAAGGTGGGGGGGTTGCCGGGGTACCAAGCAAGGGTGCCCCCAAGGTTA
CCCTCGGAGGGTGCGTCAAGTCGGCGCAGACCGTACCCAGTCTCTTGAAG
ACACTAGAAATTTGCAAGGAGCTGTATGCCAGGAAGAAGGAGACGTTCCA
CCACGCGTTCCAGCAAACTACGCAGGCTAGGAGTGATGCTTTTGACCGGG
GGTCAGCAGAGTCTGGGGCTTCTGCAGCGGCTGGGGCTTCTGCATCGGGT
GGGGATACCACAGCGGGTGGGGATACGCCAGCGGCTGGGGCTTCTGCAGG
GGCTGGGGCTTCTGCAGCGGCTGGGGCTTCGGCAGGGGCTGGGGATTCGC
CAGAGGGTTTCGCGGCGTTCGGTCGGCTGCTGGAGGCGATCCGCCTTGTT
GAGGACATATGTCTCGAGGGCCGGCGGGTCGTCGAAGACACGCTCGAGGC
AGTGGATGACGAGGTTCTTGCGTTGACGAAAATCAAGAGCAAGGTACAGC
GCCGGAAGCAGAGGACTCCAACTCCCAGCTTGCGATTGCCGGAGGAGCTT
AAAATCAAGAGCAAGGTACAGCGCCGGAAGCAGAGGACTCCAACTCCCAG
CTTGCGATTGCCGGAGGAGCTT
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