mRNA_E-siliculosus-1a_M_contig87.16769.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig87.16769.1
Unique NamemRNA_E-siliculosus-1a_M_contig87.16769.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig87.16769.1 vs. uniprot
Match: A0A6H5KGH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH5_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 4.090e-86
Identity = 139/168 (82.74%), Postives = 141/168 (83.93%), Query Frame = 3 
Query:  363 DPAQTV--TAECAGQFDLPVLGGVDVVEYWRLPSAAEAVLGSPNLMSVFGNYRFFFSSVENLRVFEHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGRLHIFRSSTPKEEFEEDIPGNLDRGNAVWEGWFGGMEESLMVPPINTACFCNDHICDDQ 860
            DPA     +AECAGQFDLPVLGGVDVVEYW LP AAEAVLGSPNLMSVFGNYRFFFSSVENLRVFE        A G      IANE VWTSTTLGPFGNPSKWGIYGGRLHIFRSS PKEEFE+DIPGNLDRGNAVWE WFGGMEESL VPPINTACFCND ICDDQ
Sbjct:   17 DPASIFYCSAECAGQFDLPVLGGVDVVEYWSLPLAAEAVLGSPNLMSVFGNYRFFFSSVENLRVFEARGFSLRSA-GEKIWQRIANEPVWTSTTLGPFGNPSKWGIYGGRLHIFRSSMPKEEFEQDIPGNLDRGNAVWERWFGGMEESLAVPPINTACFCNDRICDDQ 183
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig87.16769.1 vs. uniprot
Match: D7FW14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW14_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 3.090e-70
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 3 
Query:  540 LRVFEHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGRLHIFRSSTPKEEFEEDIPGNLDRGNAVWEGWFGGMEESLMVPPINTACFCNDHICDDQ 860
            LR  +HDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGRLHIFRSSTPKEEFEEDIPGNLDRGNAVWEGWFGGMEESLMVPPINTACFCNDHICDDQ
Sbjct:   15 LRFSQHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGRLHIFRSSTPKEEFEEDIPGNLDRGNAVWEGWFGGMEESLMVPPINTACFCNDHICDDQ 121
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig87.16769.1 vs. uniprot
Match: D7FW13_ECTSI (YHS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW13_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 8.200e-59
Identity = 96/179 (53.63%), Postives = 126/179 (70.39%), Query Frame = 3 
Query:  321 LSGLIDPHNGDNGTDPAQTVTAECAGQFDLPVLGGVDVVEYWRLPSAAEAVLGSPNLMSVFGNYRFFFSSVENLRVFEHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIY--GGRLHIFRSSTPKEEFEEDIPGNLDRGNAVWEGWFGGMEESLMVPPINTACFCNDHIC 851
            LSGL++P+NG +   P  T TA+C G   LPVLGGVDVV YW LP+ ++ V G+PNL+S+FG+YRF+FSS+ENLR FE D ++Y+PAWGGFCSYG+A E+ W    LGPFG+PSKW I    G+LH+FRS  P  +F      NL+ G+A+W GWF    E     P+NTAC C++ +C
Sbjct:   86 LSGLVNPNNGSH---PTLTTTADCTGDTHLPVLGGVDVVAYWTLPAGSKPVFGTPNLVSLFGDYRFYFSSIENLRTFESDPVRYIPAWGGFCSYGVAAETFWRPDILGPFGDPSKWLILPGDGKLHVFRSERPMTKFLLAPGENLEAGDAIWNGWFPA--ERGGAAPLNTACLCSEEMC 259
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig87.16769.1 vs. uniprot
Match: A0A6H5JXZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ9_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 5.850e-38
Identity = 73/167 (43.71%), Postives = 94/167 (56.29%), Query Frame = 3 
Query:  366 PAQTVTAECAGQFDLPVLGGVDVVEYWRLPSAAEAVLGSPNLMSVFGN-YRFFFSSVENLRVFEHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGRLHIFRSSTPKEEFEEDIPGNLDRGNAVWEGWFGG--MEESLMVPPINTACFCNDHICDD 857
            PA   TAEC G    P + G D+V Y  L      V G       +G  Y F FS++EN   FE D  KY+PAWGGFCS+GI++E +W    LGP  NP  W I   RL++FRS TP ++F++D    +  GN VW  WFGG    E  ++ P NTACFC++  C D
Sbjct:   96 PAHVTTAECTGDTSKPAVKGFDLVAYRSLQPGTHGVRGLWEFSVQYGQGYTFLFSTLENQLEFESDPEKYLPAWGGFCSFGISHEDIWGPDVLGPPSNPDIWLIEDDRLYLFRSETPYDKFKDDKARYIKHGNQVWTEWFGGNPSNEGTVMTPFNTACFCSEESCAD 262
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig87.16769.1 vs. uniprot
Match: D7G5N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N6_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.260e-37
Identity = 78/170 (45.88%), Postives = 97/170 (57.06%), Query Frame = 3 
Query:  369 AQTVTAECAGQFDLPVLGGVDVVEYWRLPSAAEAVLGSPNLMSVFGNYRFFFSSVENLRVFEHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGR-LHIFRSSTPKEEFEEDIPGNLDRGNAVWEGWFG-----GMEESLMVPPINTACFCNDHICDDQ 860
            +QT T EC G    PVL G DVV Y+ L     A+ G       +  Y F F+S +N  +FE   L Y+PAWGGFC+YGIA E  WT +TLGP  +P+ W I     L IFRS  PK  F EDIPGN+  GN +W GW+G     G +++     +NTAC CN  IC DQ
Sbjct:   68 SQTTTWEC-GTSTEPVLNGADVVSYFSLKEGEAAMYGFEEYPVKYNGYTFLFASAQNKALFEASPLDYIPAWGGFCAYGIAAEDWWTVSTLGPPSDPNSWLITDDNVLRIFRSEVPKAYFMEDIPGNIATGNRIWTGWWGEGTLPGADDTGSA--MNTACLCNIEICLDQ 234
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig87.16769.1 vs. uniprot
Match: D7FW15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW15_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.500e-33
Identity = 68/167 (40.72%), Postives = 89/167 (53.29%), Query Frame = 3 
Query:  366 PAQTVTAECAGQFDLPVLGGVDVVEYWRLPSAAEAVLGSPNLMSVFGN-YRFFFSSVENLRVFEHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGRLHIFRSSTPKEEFEEDIPGNLDRGNAVWEGWFGG--MEESLMVPPINTACFCNDHICDD 857
            P    TAEC G    P + G D+V Y  L      V G       +G  Y F FS++EN   FE D  +Y+PAWGGFC +GI++E VW    LGP  NP  W I   RL++FRS TP  +F ++    +  GN +W  WF G    E  ++ P NTACFC++  C D
Sbjct:   96 PVHVTTAECTGDTSKPAVEGFDLVAYRSLQPGTHGVRGLWEFSVQYGQGYTFLFSTLENKLEFESDPERYLPAWGGFCGFGISHEVVWGPDVLGPPSNPDFWLIEDDRLYLFRSETPYGKFMDNKARCIKHGNQMWTEWFAGNPSNEGTVMTPFNTACFCSEETCAD 262
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig87.16769.1 vs. uniprot
Match: A0A7S2CFY1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFY1_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.070e-31
Identity = 73/189 (38.62%), Postives = 98/189 (51.85%), Query Frame = 3 
Query:  285 TASATSMYAYGLLSGLIDPHN-GDNGTDPAQTVTAE-CAGQFDLPVLGGVDVVEYWRLPSAAEAVLGSPNLMSVFGNYRFFFSSVENLRVFEHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGRLHIFRSSTPKEEFEEDIPGNLDR----GNAVWEGWFGGMEESLMVPPINTACF 833
            +A   S + YG   G I P N G +   P+ + T   C      PVL G D+VEYW L S  + V+GS +       Y+F+FS+ +N+R FE D   Y P WGGFC YGI+ E+ WT +TLGP  NP+ W I  G L+ F   TP+ +F   + GN+      G+A W  WF           +NT CF
Sbjct:   39 SAGYASQHFYG---GSIFPLNLGASPPMPSTSATKSMCIVPTSGPVLSGYDLVEYWNLNSGDDGVIGSSDYSVTIDEYQFYFSNAKNMRSFEADPTSYFPKWGGFCGYGISEETWWTKSTLGPDANPNVWSIIDGDLYFFMFETPQTKF---LTGNMTSEKISGDARWTSWFND------TTVLNTGCF 215
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig87.16769.1 vs. uniprot
Match: F0Y5C1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5C1_AURAN)

HSP 1 Score: 138 bits (347), Expect = 3.890e-30
Identity = 67/152 (44.08%), Postives = 90/152 (59.21%), Query Frame = 3 
Query:  381 TAECAGQFDLPVLGGVDVVEYWRLPSAAEAVLGSPNLMSVFGNYRFFFSSVENLRVFEHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGRLHIFRSSTPKEEF-EEDIPGNLDRGNAVWEGWFGGMEESLMVPPINTACF 833
            T  C      PVL G DVV Y  L + A A  GSP   + +G+Y F+F+S  N   F  D  +Y P +GGFCSYGI++E+ WT +TLGPF NP+ W I  GRL +F   TP+ +F  ++I   LDRGN +W+ W+G   + L+    NT CF
Sbjct:   17 TEVCTDAAAGPVLDGADVVAYHSLEAGANATYGSPEFEASYGDYSFWFASEANRAAFAADPARYAPKFGGFCSYGISDETFWTKSTLGPFSNPNVWRIVDGRLLVFMYCTPEHKFFSQNITAQLDRGNQIWDTWWG---DDLV---FNTQCF 162
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig87.16769.1 vs. uniprot
Match: A0A7S3JR48_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR48_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.150e-27
Identity = 62/152 (40.79%), Postives = 81/152 (53.29%), Query Frame = 3 
Query:  381 TAECAGQFDLPVLGGVDVVEYWRLPSAAEAVLGSPNLMSVFGNYRFFFSSVENLRVFEHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGRLHIFRSSTPKEEF-EEDIPGNLDRGNAVWEGWFGGMEESLMVPPINTACF 833
            ++ C      PVL G DVV Y  L   A A +GS +  + +G Y F+F + EN   F  +  KYVP +GGFCSYGI NE  WT  TLGP  N + W IY   L +F   TP+ +F   +I   ++RGN +W  W+        VP  NT CF
Sbjct:  136 SSSCVDPSAGPVLEGADVVAYRYLNVGANATIGSADYAAKYGEYTFYFENAENRATFLSNPDKYVPKFGGFCSYGITNEFFWTKDTLGPNANKNVWIIYDDHLFVFMYCTPEHKFVSRNITEEIERGNQIWSTWWND------VPTFNTGCF 281
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig87.16769.1 vs. uniprot
Match: A0A7S3UVA0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVA0_HETAK)

HSP 1 Score: 116 bits (291), Expect = 4.310e-26
Identity = 62/151 (41.06%), Postives = 78/151 (51.66%), Query Frame = 3 
Query:  381 TAECAGQFDLPVLGGVDVVEYWRLPSAAEAVLGSPNLMSVFGNYRFFFSSVENLRVFEHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSKWGIYGGRLHIFRSSTPKEEFEEDIPGNLDRGNAVWEGWFGGMEESLMVPPINTACF 833
            +A C      PVL G DVV Y+ L    + V GS    SV+  + F+FSS EN+  FE D  KYVPAWGGFC+YG+A E+ WT+ T+     P  W I  GRL  F        F   +P  +  G+A W GW  G+E        NT CF
Sbjct:    5 SAACLDAGAGPVLEGYDVVAYFGLDPLDDGVQGSSEFTSVYQGFEFYFSSKENMEKFESDPEKYVPAWGGFCAYGVAEETWWTAETMSAGVVPDAWRIIDGRLFFFHDIGVAAWFAALLPDAIREGDATWHGW--GLEG------YNTNCF 147
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGH5_9PHAE4.090e-8682.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW14_ECTSI3.090e-7097.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FW13_ECTSI8.200e-5953.63YHS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JXZ9_9PHAE5.850e-3843.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5N6_ECTSI2.260e-3745.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FW15_ECTSI1.500e-3340.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CFY1_9STRA6.070e-3138.62Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0Y5C1_AURAN3.890e-3044.08Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3JR48_9STRA1.150e-2740.79Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3UVA0_HETAK4.310e-2641.06Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig87contigE-siliculosus-1a_M_contig87:590839..597826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size798
Model size2821
Exons5
Ec32 orthologEc-01_002960.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2D48G@1,2SU9E@2759
Seed eggNOG ortholog2880.D7G5N6
Seed ortholog evalue2.7e-34
Seed ortholog score152.5
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936338.1928897-UTR-E-siliculosus-1a_M_contig87:590838..5927961622936338.1928897-UTR-E-siliculosus-1a_M_contig87:590838..592796Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 590839..592796 -
1696251032.6157084-UTR-E-siliculosus-1a_M_contig87:590838..5927961696251032.6157084-UTR-E-siliculosus-1a_M_contig87:590838..592796Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 590839..592796 -
1622936338.326127-UTR-E-siliculosus-1a_M_contig87:597761..5978261622936338.326127-UTR-E-siliculosus-1a_M_contig87:597761..597826Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 597762..597826 -
1696251032.7056994-UTR-E-siliculosus-1a_M_contig87:597761..5978261696251032.7056994-UTR-E-siliculosus-1a_M_contig87:597761..597826Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 597762..597826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936338.2424233-CDS-E-siliculosus-1a_M_contig87:592796..5929561622936338.2424233-CDS-E-siliculosus-1a_M_contig87:592796..592956Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 592797..592956 -
1696251032.636191-CDS-E-siliculosus-1a_M_contig87:592796..5929561696251032.636191-CDS-E-siliculosus-1a_M_contig87:592796..592956Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 592797..592956 -
1622936338.254344-CDS-E-siliculosus-1a_M_contig87:593380..5934801622936338.254344-CDS-E-siliculosus-1a_M_contig87:593380..593480Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 593381..593480 -
1696251032.6516972-CDS-E-siliculosus-1a_M_contig87:593380..5934801696251032.6516972-CDS-E-siliculosus-1a_M_contig87:593380..593480Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 593381..593480 -
1622936338.268651-CDS-E-siliculosus-1a_M_contig87:593971..5940201622936338.268651-CDS-E-siliculosus-1a_M_contig87:593971..594020Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 593972..594020 -
1696251032.6628327-CDS-E-siliculosus-1a_M_contig87:593971..5940201696251032.6628327-CDS-E-siliculosus-1a_M_contig87:593971..594020Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 593972..594020 -
1622936338.284547-CDS-E-siliculosus-1a_M_contig87:594524..5946941622936338.284547-CDS-E-siliculosus-1a_M_contig87:594524..594694Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 594525..594694 -
1696251032.6732578-CDS-E-siliculosus-1a_M_contig87:594524..5946941696251032.6732578-CDS-E-siliculosus-1a_M_contig87:594524..594694Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 594525..594694 -
1622936338.3080106-CDS-E-siliculosus-1a_M_contig87:597442..5977611622936338.3080106-CDS-E-siliculosus-1a_M_contig87:597442..597761Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 597443..597761 -
1696251032.6885042-CDS-E-siliculosus-1a_M_contig87:597442..5977611696251032.6885042-CDS-E-siliculosus-1a_M_contig87:597442..597761Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 597443..597761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig87.16769.1prot_E-siliculosus-1a_M_contig87.16769.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig87 592797..597761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig87.16769.1

>prot_E-siliculosus-1a_M_contig87.16769.1 ID=prot_E-siliculosus-1a_M_contig87.16769.1|Name=mRNA_E-siliculosus-1a_M_contig87.16769.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=266bp
MILKMRRSSHPSSPSLSGPLCCACGVFAFALVASVNLFPAQPRSEIEPAE
MVADTTATAATTARTAAVVDSADTASATSMYAYGLLSGLIDPHNGDNGTD
PAQTVTAECAGQFDLPVLGGVDVVEYWRLPSAAEAVLGSPNLMSVFGNYR
FFFSSVENLRVFEHDKLKYVPAWGGFCSYGIANESVWTSTTLGPFGNPSK
WGIYGGRLHIFRSSTPKEEFEEDIPGNLDRGNAVWEGWFGGMEESLMVPP
INTACFCNDHICDDQ*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig87:590839..597826-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig87.16769.1 ID=mRNA_E-siliculosus-1a_M_contig87.16769.1|Name=mRNA_E-siliculosus-1a_M_contig87.16769.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6988bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:590839..597826- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTCCAATAAGCCACCGACCCACAACCGCATTTTGCAGCACAACTCAGCAG
CCGCAGCAAGGAGCAATGATTTTGAAGATGAGACGATCGAGCCACCCAAG
CTCGCCCAGCCTTAGTGGGCCCCTCTGCTGCGCCTGTGGCGTATTCGCGT
TCGCCCTGGTGGCCAGCGTCAACCTGTTCCCGGCTCAGCCGCGGTCGGAG
ATCGAGCCTGCGGAGATGGTGGCTGACACAACAGCAACAGCGGCAACAAC
AGCACGAACAGCGGCGGTGGTGGATAGTGCTGATACAGCTAGTGCGACCT
CGATGTATGCGTATGGGCTGTTGTCGGGGCTGATAGATCCTCACAACGGG
GACAACGGTACGGATCCTGCGCAGACCGTCACAGGTATGTGTGTACCTGC
GGAAGGGTACGTAGGAAAGAAGTGGTAAACAACTGGTATATACTAGAAGT
ATTAGATAGACTACTGCTTCAATCTTTTGTGGGTGAACTTTGGTGCGGGC
GTCAATGTCAAACCGCTCTGCAACCGCCGTCAAACGTGGTGCGTGGTGCT
GTGAGGTGTGAGCTAGCATGTGTGGATAAGCTAGTAGGATATCCCGCCCG
CTTGGGGTGTTGAGCTCTCTCTCCCATTTGGAATGCCGACCCATTGCTGC
AAATCAGGGTAGTAGGGATAGGGATGCTTGCTAACCGCAGCATCGCTGGA
GAACAAGAGCAGTTTTACGTGATCGCGGCTGCCGAAAGGTTCGTAATTCA
TAGAAATTTTCAACGGATCAACCGCACAGCAGACAGCTTGTTGCCACAAG
ACACTGCGGGAGCAGCAACATGAGGCCACAGCACTGCAGTGTGCAACCCA
ACTTGATTGTGTGCATACCGCCAACACGGCACGTACCACATGTTGTGGAC
AGTGGACAGACGTGACTGACGGGAACCAGTTTTTTTTCTTCTTTGATCAT
CGTCGTACAATGTACGTAGAATAGAAAACAGCTAAGGATCGGTCCCGGAG
GGAACGTCTGACAAGAGCCAGTGCCCCTCGACATAGTACTTGTACAGCGG
CTAAGCGCACATTACCCATGCAGTAAATGCATATACGTCCGCGGGGGATG
TGCTTACAGCTGTAGGTGTAGTTCTTTGCAGGCGGTGGGAGTGGAGTGAA
ACCTGCCGCCAAAGCGGGGTGCTGAGCGCGTTGGTTGCGTCTGTCTCTGT
TCAAGTCCGGCCCAACCTCCCAGAGCCTAGAATGGGGGCTGGTGAGAACA
ACCGCAGTGGTGCAAGCAAAAGTAAATAGCCGGGAACAACTGCGGTGTAC
ATCATCACTTTGCGGTCTTCTGGTGTGCTTATTTCATCATCAAAGAAGGA
CCGTACGTGCCGAATTGAACTCATCTGTGCTCCACCGCGAAAGCAGCCTA
AACCTAAGCATTATGTGGCTTACCTTGAAGTGAGAGAATCAGGACGACGA
GTCCGCGTTACTATACTAGCTGTAGATAACGTGCATGCGACGGGGGGATG
TAGCAGTTTTTAGTGAATAGAGCTGCGGCCTGCGGAGAAATAATGGTGGG
TATGCTGACAAGCGAGACACTTTGCCCACCGTTGGGGAATACTGCATACT
TGGAGTATTGTATGCACAATGGTAGAGTCGACTGGGCGAGCTCCGCCGGC
CTGTTTTCGGCCTCCGTTTCGGCCTTCACATGTACACAGCAGCCATCACC
CAGCCGTTGGTCCTCGTCGAAATGGAGAAGTTTTCGTTATATATCCCGGA
AGTGCGGATCGTAACCCCCCGCAAGCATCCGTTACACCGCCGCCCACAGC
AGTAGTCCGGCCGTCAACATTTGGAGTGGTTGTTGTTCTTGCCGCTGACG
TCGCAACCCACTGCCACCACCTTCTTCTGCCGACCATGTACATACATGTA
GTAGGCAAAGACGACAACGATACGGCGGTTGAGGCTTCTCCATGGGGGAT
TTTTAGGTTAGCGACGAAACGGGTAGATACAAGCGTCGAGAATCGGGCAA
ATGCATATCGAACCGGGTAAGCGCTCGCCCGCCCGCCCGTCCGCCTGCCC
GCCCCGTGGGTAACTTCCCGGGTAGCGCAGCGTGTCGTGGTGAGCCCGGC
AGAAAGAGTGGCGCGATGAAAGCACCGGGGCGGGCTGGCTCGGAGCTTGT
GGCGGGCCTTTTGGTGGAGGTTATGGGGTCGTGTTTCTGTTGCTGGTTGT
CGTTGCGCGCCGGTTGACAATGCACGCCTACGACGGGAGGCTGCTGATGC
GACCCATCGCGTTGGAATCCTATTTTCCGGTTGCTGGGCAGCTGGGGAGG
GCATGAAAGAAGTTTTGTCGTGTGTGGCACCCGCGTCGACTTCTGCCATA
TTTTGTGTTCAAGTGGATAGTTGACTTAGTTGCGAGGCGGTCGTTCTTTT
ATCTCTCTCTCTCTCTCTCGCTCTCTCTGTCTCTCTCTCTCTCTCTGTGT
CTTTTCTATTTGTGTGTGTGTCGAAAACGGCCGAAAACGACTCTGGTTTG
GGAGCCCCGCCCATGAGTATGAGAAAAATTGGGGTGTCCGCTCCCTGTCT
CTCGTATCCGTGTGCTTCCCCGATAGCAGCAAGACTATGTAGTCGCGCTT
CGTGGACGTATGTGTATCCTTGACGCTCGTTTTGGTAAGTCTAGAGCAAC
GTACGGGGGTCCCGGGCGCAGCTGGTGCCAGGTACCCACAAGCTTTCTTC
TTCGCACTCTTTGTCCTGCTGCTTGCGAGTTAGCTGTCTTCGGGGGTAAG
CCTTGGTTGAAGGCTTTGAGAAGTGCGAACTGATTGCGCGGAGTTGGGAT
TGTTGTTTGTTGGGCTGGGTGCTCCGGAAGCTGCTTCTGCCCTTCGACCT
CGTTTCGTGGCAATTTCTTCCGACCAGCGAGCATTCTCCCCAAGACCATG
TATCTTCGAAAACACAACTGAGTGTATGTATGTATCTTGGTTGAACTCTC
GCGCCAATATTTAAGCTTTACACCGTCAGCAGACGGTCGCTTCCACTTCC
GACAGCGGTTCTCCGCCCCCGCACAAACACTCATGATGTGACCCTCTCCC
TCTCCTATGCCCTTCGACTGTTTCGGACGAGCAGCTAACCAACCAACCAC
CCCGGACACCGCATCTATCTTTGTTTCCTCAGCGGAATGCGCAGGGCAGT
TCGACCTGCCCGTTCTGGGTGGCGTGGACGTCGTAGAGTATTGGAGATTA
CCGTCTGCAGCGGAAGCAGTCTTGGGGAGTCCGAACCTGATGTCGGTGTT
CGGGAACTACCGGTTCTTCTTTTCGTCGGTCGAAAACCTCCGGGTGTTTG
AGGCAAGAGGTTTTTCACTTCGTTCAGCAGGGTCAGGCAACTTGCATCTA
GCTTTTAGGATTTTTGCGGATTTTGCATCTTGAAATACATCACACACCCT
CCCTCTTCTCGCTCCTTCTTATACGCCGTGGCCACGGCAAACGTGGTGAG
CATCTGGGTTTTGTTGGCTTGCCCTGTGGCGTGTGTATCCCATTCGGATC
AAACGGACGTTCCTTGCTTCGAACAGAGGGTCCTGGATGTAGCTGTTCTC
TTGCTGCTCTGCCACCACATTTTCTGGTGATTTTCCGCACCCCCCGCTCT
CGGTACGTGCGTCGCTGCACGGTCTTTTTTGTCATATCCTACGTACGACG
GCACCGGCGCGCGTGGAAGGTCTACACAATCAATCGTGGTGCTTCAGTAC
ATACCGTTAACTTGCTGCATACTATCATTTCTTACAAACGTCAGCTGGTG
ATACATACACCCCGCCCCCGCCCCCCCCCATCAATCGCACCCTCCGTTTC
TCTCAGCATGACAAGCTCAAGTACGTCCCAGCCTGGGGAGGCTTCTGCTC
TTACGGTAAGCTCTAGGGTGCGGGGGGCTTGCTCAAACACGCCTAACGTT
GCTGTGTTCAGGGAGAAGAAGGTCAGCGTACGTACATGTACCGTAGCGCA
CGCTGGAAGCCAGCAGCCCAAGGCAGCAGTGCAGTGGACAGGCAAGAAGG
AAACGCGCCAACTCGTAGATTCGACACGAGGCTGTCGTCCAACGAAGAAA
TTACAGCAGACCCCGTGGATGTTAGGAATTATTTTTTCCGTTGCGCATCC
CTAACATGGCTTACTGCACGCCTTGTCGGCTAGCGAAAACATTGCAGCAG
ACCCGTTGCGCATCCCTAGCATGGCTCATTGCACGCGACGTCTCTGCTGG
GACGCAGGCAACAAATCTCCCGTGTGAGTGCCACGCGCCTTGTTTGTCAC
ACCTTTGGTAAATAAATGCCTTGCCACGCAGTCAATGACATGGGTCCTGT
TTTTGTGTGCCTGTCGTGAACAAACGGTCGTGCCTCGACGTTCCAGGCAT
CGCGAACGAGTCAGTTTGGACGTCCACTACCCTAGGGCCGTTTGGGAATC
CCTCGAAGTGGGGAATATATGGCGGCCGCCTACACATCTTCCGAAGGTAA
CTGGGCCTTTGGGGCGTAACCTGTATCAGTATCATATGCCATGTAGTAGT
AGTGAGCTCTATGAGAACGCACTGGGACGTACAACAAGGTCCGCCCACTG
GGGTTGTCGAGTTGGCGCGCGGGGTGCGTGAAAAAACAGGGAAAGAAGTG
GTTATTTTGCTCCTACCGCGCCGGGACGTGAATTCCACACGTTGGTATAT
ATCTACCGCATGATAAAAGTTCGAATAGGAAGCACTTGGCATTCACAGCA
CCATCACACGCACGGTGGTTTAGACCGTATACCCTTCTCTTGCGTTTTTT
TTTTTCGTTCCGCGTTGTTAGGTACTTGCCGTGCCCTTCGCGCCGTACAG
ACCAGTTACCCTCGCTCCTATATCCTGTTTTTTTGTTTGCTGCTGCTACG
ACGCCCGTTGCCGGTTGCAGTTCCACGCCAAAGGAAGAGTTCGAGGAGGA
TATTCCGGGCAACCTCGATCGGGGCAACGCCGTGTGGGAAGGGTGGTTCG
GGGGTATGGAAGAGAGCCTTATGGTGCCTCCGATCAACACGGCCTGTTTC
TGCAACGACCATATTTGCGACGACCAGTAGAGCTACAGTAGCTGTGAAGA
AGTTTGGTTGATACGCTGCTTCGATTTCGAAGGCCGAAGCCGAAACGAAG
TGACCTGTACGTTTGTGCAGCAGGCGGAGGAGCGCGACACGCTGGCTCTT
GCTAGAAGTGGTGGGGGTGGTGGCGATGCCCGATGGCGGGAAGCGGTAGA
TGATGCTGTAATGCTGTAATGCTGTAATGCTGTGGGTGGTGCGAAGCGAG
TCCCTCCTGCCGTCTGCGGCTGCTATTTTTTTCTGAGGTTTCCTCCTGCT
GCATCTCTCTTGCACCGATTTGTTTTTTTTACCCCGATAACCTACGGAGC
TATGCATACAAGCCAATATTGATAGAACAGCGACGGCCGAAAGGAAGCGA
GACACTGGCTTCTTCGATGGCCGTAATACGCATGGCCCGGCCGTTTCTCA
GGATTGTAGAGCAACTTGTCCGGCATTTGGACGAGATGGAGCCCGATTTG
CTTTCCCGCTGTTGTAGCTGGCCTTTCGGAGTGTTAGAATCGAGTGCCAT
GCCGGATCCTCAAATTTCGCGGACTGCTTTTGCTCGCCGTCCAGTTGTTG
CTGAGGTGATGTGAGTTTCTAGTCGATAGGAATGCGGCGAAAAGTAGGTC
GCGCGGGCACACGGTGGGTGTGCCTAGGGTTGATGTACGGCGCGATGTCT
CTTGTCATTGGTCCTCGCGCTACATCTTGTTGTGTCGTTTTGATTTGAGG
GCTGAACCGTCTTGTGGAGATTGATTTCCTCCTTGTATTTTCGCACGTTC
ATGTGTGCTATTTTAGCGCTACATACTGGTGTATTGTTGTCTTGTAAAGA
GTGTTGTTCTCTGTGTATTTTCACACGTTCAAGAGCTCCTCTTAGCTCTA
CATATTGGCTTGTTTTGATTTGAGTGTTGAACCGTCTTGTCTTGTGGAGG
AGATCGATTTTTCTCTTGTTCTTTTCATACGTGCATGCTTGGTCATATTG
TCTTGGAGCTGCAAATTACTTTGTCGTGCTGAGTAGAGCGTTGAACCCGT
CTTTGGAACAGATAAATTTGATTGCCTCTGTTTCTTTTCGCAGGTTCAAT
GTGTTGTGCCGTTGGTTGAGCTGTCGTCCTGCTTGTTGGTTGTCTTGGCA
TCTGAAAAGTCCCCACGCTTTCGGACACCGGTAACTTTTCGCTTGCAAGT
ACACTTATCACTACATAGCTCTGCTCTTGCTCCAGCGGATGGCAGCATCG
ATTGTTTTTGGGTTGTTGGTGGGTGCTGTGCTGGCGGGCGCGTGTGGAAC
TACTGTAAGTTGGAGCGTCCACAAACTTTACTACACGGCGTCGTGTTGGT
AGAGCAATTTGTATTTCTGGACGTTGTGACGCCTTTTGAGCAAGGGAAGC
CCGCGGGTTACAGGGATCCCTTGTGGATAGTTTCGAGCATGAGATAGCTC
TTAGGTTATAGCGGCGTGGTAGCCCCGCGGTGATTTTACCCTTCTACATG
CATGAGTATTCTTGTTCGAGACCAGTTAACTAGGTGCAGATGCGGGGAGG
GGCGCGGGGGGCTATACGCGGGCGGTCTAAATCGACTGATTGTAGTCTGT
GGTCACGCTCCTTTTCTGCCAAGGTGCGCGAATTGGTATATACCATGTGT
ATGGTGAACAGGGAAGGGGGTTCGCAGAAGGACGTAGCAGGTGGTGACGG
TGGTCTCTGCCAACCTTGGCTTCATTCGGCTAAACTTCTGTACCAATTGG
GAAACCCGCGGTTTGGTGGTACGTCCAATATGCCTTGGGACATCGGGACA
TTGGGACGCCACCCAGAGGAAAATGTGCCGCTGTGCACTGCCGGACGTGC
GTGTGTCCATCCTTCCCTGCAGCAACAATGATTTGCAGGATCATGTGCAT
AGTACCGGCAAAAAGAGTGTGTGCGCCACAGAGTGGGTCTTGAGTCTTGG
CACGACAAAGAAGGAAAAGTTTGCACTTGTAAAGCAGT
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:590839..597826-

>mRNA_E-siliculosus-1a_M_contig87.16769.1 ID=mRNA_E-siliculosus-1a_M_contig87.16769.1|Name=mRNA_E-siliculosus-1a_M_contig87.16769.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1596bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:590839..597826- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGATTTTGAAGATGAGACGATCGAGCCACCCAAGCTCGCCCAGCCTTAG
TGGGCCCCTCTGCTGCGCCTGTGGCGTATTCGCGTTCGCCCTGGTGGCCA
GCGTCAACCTGTTCCCGGCTCAGCCGCGGTCGGAGATCGAGCCTGCGGAG
ATGGTGGCTGACACAACAGCAACAGCGGCAACAACAGCACGAACAGCGGC
GGTGGTGGATAGTGCTGATACAGCTAGTGCGACCTCGATGTATGCGTATG
GGCTGTTGTCGGGGCTGATAGATCCTCACAACGGGGACAACGGTACGGAT
CCTGCGCAGACCGTCACAGATGATTTTGAAGATGAGACGATCGAGCCACC
CAAGCTCGCCCAGCCTTAGTGGGCCCCTCTGCTGCGCCTGTGGCGTATTC
GCGTTCGCCCTGGTGGCCAGCGTCAACCTGTTCCCGGCTCAGCCGCGGTC
GGAGATCGAGCCTGCGGAGATGGTGGCTGACACAACAGCAACAGCGGCAA
CAACAGCACGAACAGCGGCGGTGGTGGATAGTGCTGATACAGCTAGTGCG
ACCTCGATGTATGCGTATGGGCTGTTGTCGGGGCTGATAGATCCTCACAA
CGGGGACAACGGTACGGATCCTGCGCAGACCGTCACAGCGGAATGCGCAG
GGCAGTTCGACCTGCCCGTTCTGGGTGGCGTGGACGTCGTAGAGTATTGG
AGATTACCGTCTGCAGCGGAAGCAGTCTTGGGGAGTCCGAACCTGATGTC
GGTGTTCGGGAACTACCGGTTCTTCTTTTCGTCGGTCGAAAACCTCCGGG
TGTTTGAGCGGAATGCGCAGGGCAGTTCGACCTGCCCGTTCTGGGTGGCG
TGGACGTCGTAGAGTATTGGAGATTACCGTCTGCAGCGGAAGCAGTCTTG
GGGAGTCCGAACCTGATGTCGGTGTTCGGGAACTACCGGTTCTTCTTTTC
GTCGGTCGAAAACCTCCGGGTGTTTGAGCATGACAAGCTCAAGTACGTCC
CAGCCTGGGGAGGCTTCTGCTCTTACGCATGACAAGCTCAAGTACGTCCC
AGCCTGGGGAGGCTTCTGCTCTTACGGCATCGCGAACGAGTCAGTTTGGA
CGTCCACTACCCTAGGGCCGTTTGGGAATCCCTCGAAGTGGGGAATATAT
GGCGGCCGCCTACACATCTTCCGAAGGCATCGCGAACGAGTCAGTTTGGA
CGTCCACTACCCTAGGGCCGTTTGGGAATCCCTCGAAGTGGGGAATATAT
GGCGGCCGCCTACACATCTTCCGAAGTTCCACGCCAAAGGAAGAGTTCGA
GGAGGATATTCCGGGCAACCTCGATCGGGGCAACGCCGTGTGGGAAGGGT
GGTTCGGGGGTATGGAAGAGAGCCTTATGGTGCCTCCGATCAACACGGCC
TGTTTCTGCAACGACCATATTTGCGACGACCAGTAGTTCCACGCCAAAGG
AAGAGTTCGAGGAGGATATTCCGGGCAACCTCGATCGGGGCAACGCCGTG
TGGGAAGGGTGGTTCGGGGGTATGGAAGAGAGCCTTATGGTGCCTCCGAT
CAACACGGCCTGTTTCTGCAACGACCATATTTGCGACGACCAGTAG
back to top