mRNA_E-siliculosus-1a_M_contig87.16727.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig87.16727.1
Unique NamemRNA_E-siliculosus-1a_M_contig87.16727.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig87.16727.1 vs. uniprot
Match: D7FW60_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW60_ECTSI)

HSP 1 Score: 461 bits (1186), Expect = 2.780e-150
Identity = 232/240 (96.67%), Postives = 234/240 (97.50%), Query Frame = 1
Query:  187 GMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPSNEMDANVIHEYHRHKVSQLYHCLACREWPFLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDRPETSYEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGVNTVF 906
            GMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLP NEMDANVIHEYHRHKV QLYHCLACR+WPFLDVFDHAIPSPREYLESSLRYLH KFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNK AKRV EAQVNMLKRFGTSSKHRKAAGVVHSST VVGDRPETS+EEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGVNTVF
Sbjct:  988 GMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPRNEMDANVIHEYHRHKVGQLYHCLACRKWPFLDVFDHAIPSPREYLESSLRYLHRKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKTAKRVFEAQVNMLKRFGTSSKHRKAAGVVHSSTGVVGDRPETSHEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGVNTVF 1227          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16727.1 vs. uniprot
Match: A0A6H5JDL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL6_9PHAE)

HSP 1 Score: 392 bits (1006), Expect = 2.360e-135
Identity = 213/266 (80.08%), Postives = 218/266 (81.95%), Query Frame = 1
Query:  106 MDKELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPSNEMDANVIHEYHRHKVSQLYHCLACREWPFLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDRPETSYEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGVNTV 903
            MD+ELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNV VDLP NEMDANVIHEYHRHK                           EYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEIN QRAHNKAAKRVLE+Q                 GVV+SSTAVVGDRPETS+EEPASIIENNKA IASLRALVADLEGR+VSNRPYSREILPPMDGVNTV
Sbjct:    1 MDRELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVTVDLPRNEMDANVIHEYHRHK---------------------------EYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINTQRAHNKAAKRVLESQXXXXXXXXXXXXXXXXXGVVYSSTAVVGDRPETSHEEPASIIENNKAKIASLRALVADLEGRLVSNRPYSREILPPMDGVNTV 239          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16727.1 vs. uniprot
Match: A0A7S2FFD5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FFD5_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.270e-70
Identity = 145/302 (48.01%), Postives = 179/302 (59.27%), Query Frame = 1
Query:    7 KFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDKELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPSNEMDANVIHEYHRHKVSQLYHCLACREWPFLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKH---RKAAGVVHSSTAVVGDRPETSYEEPASIIENNKATIASLRALVADLEGRIVSN----RPYSREILPPMDG 891
            KFKFVLD+KIKELKRQIEPRETEI SMK QI       EQFH SNAQLDL+IGELR+KLD MQ   + QRKRI DQE+   R + EL+ECVQ IQ+P  LR  V  ++K +V+ ++P  EMD NV HEYHRHK                           +YLE +   L  KF  DV  H  EN++VM DNM LI+EIN QR  N+  K VL+ ++  L+R   +  H   R A G    STAV+           A+ +E+N+  I +LR+ V +LEGR+       RP SREILPPMDG
Sbjct:    1 KFKFVLDYKIKELKRQIEPRETEIASMKNQIXXXXXXXEQFHRSNAQLDLMIGELRKKLDSMQQTIVGQRKRIGDQESVVSRFKSELHECVQFIQEPERLRTCVAHLHKQHVHREVPHREMDPNVTHEYHRHK---------------------------DYLERTFTTLKEKFAMDVDSHSAENMRVMHDNMSLIREINKQREANRGTKGVLQTKIASLQRLRLAKSHQQLRSAGGA--GSTAVM-----------AAEMESNRTRIQALRSAVMELEGRLSQQQEEQRPISREILPPMDG 262          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16727.1 vs. uniprot
Match: A0A836CNH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH7_9STRA)

HSP 1 Score: 231 bits (589), Expect = 5.220e-65
Identity = 155/347 (44.67%), Postives = 191/347 (55.04%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDKELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPSNEMDANVIHEYHRHKVSQLYHCLACREWPFLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQ--------------------VNMLKRFGTSSKHRKAA-----GVVHSSTAVVGDRPE------------------------TSYEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGV 894
            LEKFKFVLD+KIKELKRQIEPRETEI +MKEQIK MD ELEQFH+SNAQLD LIGELR KLD  QA  L QR+RIADQE+ R  LQKEL EC+Q+IQDP  LRA V   ++++V  + P+N +D NV +EY RH                           R+YLE SL  L  +F  D   H+TEN + M++N+ LI++IN QR  N+  K  L+AQ                    VN LKR G  S  R A+       + ++ A  G  P                            E+    I  N+A I  LR L+  LEGR+VS R YS+EILPPMDG+
Sbjct: 1087 LEKFKFVLDYKIKELKRQIEPRETEIAAMKEQIKGMDGELEQFHSSNAQLDNLIGELRAKLDSTQALILQQRQRIADQESVRRGLQKELLECMQYIQDPVRLRAAVKTFHEAHVPPETPANAVDINVQYEYRRH---------------------------RQYLERSLSLLGERFAEDAAAHKTENARCMRENLALIQDINAQRDANRTTKHALQAQGXXXXXXXXXXXXXXXXXXXVNELKRRGFGSAQRSASLNTPRSPIGTAAATAGSTPRGGDPGXXXXXXXXXXXXXXXXXSREGEEDLMGQIGANRARIQELRDLIESLEGRMVSQRAYSKEILPPMDGL 1406          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16727.1 vs. uniprot
Match: A0A662XAN7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XAN7_9STRA)

HSP 1 Score: 165 bits (418), Expect = 9.510e-46
Identity = 115/305 (37.70%), Postives = 160/305 (52.46%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDKELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVD----------LPSNEMDANVIHEYHRHKVSQLYHCLACREWPFLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDRPETSYEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPM 885
            LEKFKFVLD+KIKELKR IEPRE EI  MK QIKEMD+ELE FH SNAQLDLLIGE R++++ +Q      R+ ++DQ+    R + +L+ECV+H+Q P  L  HV  +Y   V  D             ++++A +  EY R K                           +YLE S++ L  K   D    + EN++   DNMLLI+EIN  R    AAK  L+ +   L         RKA+G  H   A +    + +  +P ++I   +A I  LR +V  LE ++V+      E+LPP+
Sbjct:   13 LEKFKFVLDYKIKELKRAIEPRENEIADMKTQIKEMDRELELFHKSNAQLDLLIGEQRQRINALQRAIASHRQLLSDQQTGVRRFRCDLHECVRHLQTPKDLALHVAQLYNKYVASDDGAGGVGSGAAAGSDVEAEIQLEYARQK---------------------------QYLEKSVQVLKRKHAVDAQAQQQENLRATSDNMLLIREINDLRGGLTAAKNNLQMERATLATAALGP--RKASGSAHGLAAAL----QQAGGDPDTLIARQRAEIEELRRVVKALEEKLVNGGSKPGEVLPPI 284          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16727.1 vs. uniprot
Match: F0VZZ4_9STRA (PREDICTED: WD repeat domain 65like putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZZ4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.190e-32
Identity = 102/296 (34.46%), Postives = 150/296 (50.68%), Query Frame = 1
Query:    7 KFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDKELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPSNEMDANVIHEYHRHKVSQLYHCLACREWPFLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDRPETSYEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGV 894
            KFKFVLD+KIKELK QIEPRE  I  +K QI+EMD+ELE FH SN QLD +IGE R++++ +Q + +  RK    QE    R Q +L++C+QHIQ P  L      +YK  V  ++  ++++  +  EY R K                           EYLE ++  L   +  +V  H  ++ +V   N+ LI+EIN  R+    AK  L+ + + +   G S  H    G+     AV   + + S   P  +IE     I  LR  V  +EG++   R +S  + PP+ GV
Sbjct: 1074 KFKFVLDYKIKELKLQIEPRENVITGLKNQIEEMDRELESFHISNTQLDGMIGEQRKQINLLQEEIVKIRKMSKRQEIWMQRFQFDLHQCIQHIQKPAQLNKEFEVLYKKYVIENVSHSDLEIQIQQEYTRQK---------------------------EYLEKTVHTLRQTYAEEVMTHENDHSRVTAQNLSLIQEINQLRSDLSDAKTQLQMEKSAVS--GGSLLH----GLKRKEQAVNRSKAKASMN-PKVVIEEQSNQIQDLRRAVQAMEGKLDETR-HSEALFPPIRGV 1334          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16727.1 vs. uniprot
Match: A0A418FL32_9STRA (UDENN domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FL32_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.530e-32
Identity = 93/237 (39.24%), Postives = 123/237 (51.90%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDKELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPSNEMDANVIHEYHRHKVSQLYHCLACREWPFLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGV 711
            LEKFKFVLD+KIKELKRQIEPRE EI  MK+         E FH SNAQLD++IGE R++LD MQ      RK I DQ++   R + +L++CVQ IQ+P  L   V  +Y+  V  D+   ++D ++ HEY R K                           EYLE S+  L  K+  DV  H+ +N     DN+ LI EIN  R     +K  L+    +L   GT     K +G+
Sbjct: 1943 LEKFKFVLDYKIKELKRQIEPRENEISDMKDXXXXXXXXXELFHKSNAQLDIMIGEQRKRLDKMQHDITRNRKVIGDQQSLIRRFRCDLHDCVQSIQNPKDLAQKVAILYQKYVTTDINVGDVDLDIQHEYTRQK---------------------------EYLEKSVEVLKRKYAHDVTAHQQDNNHARSDNLALIHEINELRTALNVSKAALQKDKAIL---GTREYFTKKSGI 2149          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16727.1 vs. uniprot
Match: A0A1Q9BZF3_SYMMI (WD repeat-containing protein 65 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9BZF3_SYMMI)

HSP 1 Score: 125 bits (314), Expect = 2.380e-28
Identity = 87/250 (34.80%), Postives = 135/250 (54.00%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDKELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPSNEMDANVIHEYHRHKVSQLYHCLACREWPFLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQ---VNMLKRFGTSSKHRKAAGVVHSSTAVVGD 741
            LEKFKFVLD+KI++LK QI+P+  +I +MK++I+ MD +LE +H  N QL + I +L+ K + +Q   + QRK++ D +    R + +L+ECVQ IQ+P  L+  V+A+YK  V   +   E+D+++  EY+R                            R+YLE S+  L  K + D   HR +N +V+Q+N+ LI EIN  R      KR  + Q   V+ LK    SS   K+   + + T  + D
Sbjct: 3093 LEKFKFVLDYKIRDLKAQIDPKNDKIAAMKKEIQAMDADLEGYHKKNTQLQVNIQQLKNKHNTLQDDIVSQRKKMTDCQTVVKRFKTDLHECVQFIQEPRLLKESVSALYKKYVPNGVKKQELDSDIQREYNRQ---------------------------RDYLEKSVENLKKKLLKDSDVHRQDNTRVLQENVQLIIEINNLRREIDYLKRERQQQRLHVSKLKSTSKSSASGKSEPDIQALTREIDD 3315          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16727.1 vs. uniprot
Match: A0A0F7V396_TOXGV (WD domain, G-beta repeat-containing protein n=2 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A0F7V396_TOXGV)

HSP 1 Score: 123 bits (309), Expect = 9.220e-28
Identity = 85/264 (32.20%), Postives = 137/264 (51.89%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDKELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPSNEMDANVIHEYHRHKVSQLYHCLACREWPFLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDRPETSYEEPASIIENNK 792
            LEKFKFVL  KI+ELK  I+P++  I  M+ QI+ MD EL  +H  N    L +G+L+ K   +Q + +D+R+++A  E    R++ +LYECVQHIQDP  L+  +T +Y+  +  +L  +++D +++ E +R                            R+YLE S+  L  +   D   HR +NIK+MQ+N  LI EIN  R      +  LE Q + ++    +S + +      S  A+    P  ++EE A+ +E  +
Sbjct:  615 LEKFKFVLGHKIRELKAMIDPKDKTIADMQRQIQAMDAELVDYHRQNKLSSLELGQLKLKQRALQDEIVDRRQQLATAENQMKRMKNDLYECVQHIQDPKKLKDAITRLYRKYITNELAKDDVDFDILKEQNRQ---------------------------RDYLEKSVESLKRRLAKDSEVHRQDNIKIMQENASLICEINDLRREVNLLR--LERQESRVQGASQNSLNSRKKVEKDSGPALPRKTPLNTHEELANTVETQR 849          
BLAST of mRNA_E-siliculosus-1a_M_contig87.16727.1 vs. uniprot
Match: S7UHX1_TOXGG (WD domain, G-beta repeat-containing protein n=14 Tax=Toxoplasma gondii TaxID=5811 RepID=S7UHX1_TOXGG)

HSP 1 Score: 123 bits (309), Expect = 9.860e-28
Identity = 85/264 (32.20%), Postives = 137/264 (51.89%), Query Frame = 1
Query:    1 LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDKELEQFHNSNAQLDLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPPALRAHVTAMYKSNVNVDLPSNEMDANVIHEYHRHKVSQLYHCLACREWPFLDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKEINMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDRPETSYEEPASIIENNK 792
            LEKFKFVL  KI+ELK  I+P++  I  M+ QI+ MD EL  +H  N    L +G+L+ K   +Q + +D+R+++A  E    R++ +LYECVQHIQDP  L+  +T +Y+  +  +L  +++D +++ E +R                            R+YLE S+  L  +   D   HR +NIK+MQ+N  LI EIN  R      +  LE Q + ++    +S + +      S  A+    P  ++EE A+ +E  +
Sbjct:  983 LEKFKFVLGHKIRELKAMIDPKDKTIADMQRQIQAMDAELVDYHRQNKLSSLELGQLKLKQRALQDEIVDRRQQLATAENQMKRMKNDLYECVQHIQDPKKLKDAITRLYRKYITNELAKDDVDFDILKEQNRQ---------------------------RDYLEKSVESLKRRLAKDSEVHRQDNIKIMQENASLICEINDLRREVNLLR--LERQESRVQGASQNSLNSRKKVEKDSGPALPRKTPLNTHEELANTVETQR 1217          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW60_ECTSI2.780e-15096.67Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JDL6_9PHAE2.360e-13580.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FFD5_9STRA1.270e-7048.01Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836CNH7_9STRA5.220e-6544.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662XAN7_9STRA9.510e-4637.70Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
F0VZZ4_9STRA4.190e-3234.46PREDICTED: WD repeat domain 65like putative n=1 Ta... [more]
A0A418FL32_9STRA4.530e-3239.24UDENN domain-containing protein n=4 Tax=Aphanomyce... [more]
A0A1Q9BZF3_SYMMI2.380e-2834.80WD repeat-containing protein 65 n=1 Tax=Symbiodini... [more]
A0A0F7V396_TOXGV9.220e-2832.20WD domain, G-beta repeat-containing protein n=2 Ta... [more]
S7UHX1_TOXGG9.860e-2832.20WD domain, G-beta repeat-containing protein n=14 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig87contigE-siliculosus-1a_M_contig87:177528..181732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size909
Model size909
Exons7
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
Ec32 orthologEc-01_003510.3
Ec32 ortholog descriptionflagellar associated protein
EggNOG OGs28M22@1,2QTIS@2759
EggNOG free text desc.WD40 repeats
GOsGO:0003008,GO:0007600,GO:0007605,GO:0008150,GO:0032501,GO:0050877,GO:0050954
Preferred nameWDR65
Seed eggNOG ortholog2880.D7FW60
Seed ortholog evalue1.1e-127
Seed ortholog score463.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936327.3137026-CDS-E-siliculosus-1a_M_contig87:177527..1776531622936327.3137026-CDS-E-siliculosus-1a_M_contig87:177527..177653Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 177528..177653 +
1696251027.2631724-CDS-E-siliculosus-1a_M_contig87:177527..1776531696251027.2631724-CDS-E-siliculosus-1a_M_contig87:177527..177653Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 177528..177653 +
1622936327.3272166-CDS-E-siliculosus-1a_M_contig87:177997..1781291622936327.3272166-CDS-E-siliculosus-1a_M_contig87:177997..178129Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 177998..178129 +
1696251027.2755408-CDS-E-siliculosus-1a_M_contig87:177997..1781291696251027.2755408-CDS-E-siliculosus-1a_M_contig87:177997..178129Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 177998..178129 +
1622936327.3392434-CDS-E-siliculosus-1a_M_contig87:178339..1785671622936327.3392434-CDS-E-siliculosus-1a_M_contig87:178339..178567Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 178340..178567 +
1696251027.2854245-CDS-E-siliculosus-1a_M_contig87:178339..1785671696251027.2854245-CDS-E-siliculosus-1a_M_contig87:178339..178567Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 178340..178567 +
1622936327.3529646-CDS-E-siliculosus-1a_M_contig87:180138..1802191622936327.3529646-CDS-E-siliculosus-1a_M_contig87:180138..180219Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 180139..180219 +
1696251027.2949924-CDS-E-siliculosus-1a_M_contig87:180138..1802191696251027.2949924-CDS-E-siliculosus-1a_M_contig87:180138..180219Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 180139..180219 +
1622936327.365866-CDS-E-siliculosus-1a_M_contig87:180517..1806041622936327.365866-CDS-E-siliculosus-1a_M_contig87:180517..180604Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 180518..180604 +
1696251027.3040254-CDS-E-siliculosus-1a_M_contig87:180517..1806041696251027.3040254-CDS-E-siliculosus-1a_M_contig87:180517..180604Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 180518..180604 +
1622936327.3807766-CDS-E-siliculosus-1a_M_contig87:181119..1812571622936327.3807766-CDS-E-siliculosus-1a_M_contig87:181119..181257Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 181120..181257 +
1696251027.3202755-CDS-E-siliculosus-1a_M_contig87:181119..1812571696251027.3202755-CDS-E-siliculosus-1a_M_contig87:181119..181257Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 181120..181257 +
1622936327.3950827-CDS-E-siliculosus-1a_M_contig87:181615..1817321622936327.3950827-CDS-E-siliculosus-1a_M_contig87:181615..181732Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 181616..181732 +
1696251027.337792-CDS-E-siliculosus-1a_M_contig87:181615..1817321696251027.337792-CDS-E-siliculosus-1a_M_contig87:181615..181732Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 181616..181732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig87.16727.1prot_E-siliculosus-1a_M_contig87.16727.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig87 177528..181732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig87.16727.1

>prot_E-siliculosus-1a_M_contig87.16727.1 ID=prot_E-siliculosus-1a_M_contig87.16727.1|Name=mRNA_E-siliculosus-1a_M_contig87.16727.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=303bp
LEKFKFVLDFKIKELKRQIEPRETEIGSMKEQIKEMDKELEQFHNSNAQL
DLLIGELREKLDGMQAQNLDQRKRIADQEASRGRLQKELYECVQHIQDPP
ALRAHVTAMYKSNVNVDLPSNEMDANVIHEYHRHKVSQLYHCLACREWPF
LDVFDHAIPSPREYLESSLRYLHHKFVADVGGHRTENIKVMQDNMLLIKE
INMQRAHNKAAKRVLEAQVNMLKRFGTSSKHRKAAGVVHSSTAVVGDRPE
TSYEEPASIIENNKATIASLRALVADLEGRIVSNRPYSREILPPMDGVNT
VF*
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mRNA from alignment at E-siliculosus-1a_M_contig87:177528..181732+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig87.16727.1 ID=mRNA_E-siliculosus-1a_M_contig87.16727.1|Name=mRNA_E-siliculosus-1a_M_contig87.16727.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4205bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:177528..181732+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGGAAAAATTCAAATTTGTGCTCGACTTCAAAATCAAAGAGCTGAAGCG CCAGATTGAGCCTCGCGAGACAGAGATCGGTAGCATGAAGGAACAGATCA AGGAGATGGACAAGGAGCTTGAACAGGTGACCTATGCTACCAGATTGATC GTCTGTGAAAGTTTTGAAGACGCCCGGTGCCCTAGTGTAGTCTGCGGGCA TCTCGTGTAACACCTAGACTTGAGCGCGAGACACTTGTTACGTAGCAGAG GGTATATACAGCAGTATGCATCTATTCCGCGTAGAGAAAGGATAAATTGA CACTTCACTATGTAGAGGAAATTGAGGATTGTATGGTGCATGGGGATATT GATATTGGGCATATTTTAACATGACGGAAGTAGAAGCGGGAATAAATTAG GTTCTCAAGTAGCGAGCAAGACCACCATACACATACGGGAACGTCCGTCG CCCTCTCCGCTTGTCTCCAGTTTCACAACAGTAATGCTCAACTAGACTTA CTTATTGGGGAGCTTCGTGAAAAGCTCGACGGGATGCAGGCCCAGAATTT GGACCAACGAAAACGGATTGCCGACCAAGAGGCTTCGCGCGGGCGCCTCC AGGTAAGTAAACTTGCGCTTAACGAAACAAGTAGTTGTAGTGCTATCAAT CGACACCTTGAAAATATTCTCAAGTTCACTCGTAGGTGCGGACTAGGCAG AAGTTTGCTCACGTGCTGTTTGTTGCAGGTGAGATAGTGTCGTTCTACCT AACTAACACGTTCCCGCCTTTCACCCCCCGTCGTTGGGCGTGTACGTCGC TTTCGAACGTAGAAAGAGCTGTACGAGTGTGTCCAGCACATCCAAGATCC GCCAGCGTTGCGCGCACATGTCACCGCGATGTACAAATCAAATGTCAACG TGGACCTGCCCAGTAATGAGATGGACGCTAATGTGATACACGAGTATCAT CGACACAAGGTGAGCCAGCTCTATCATTGCCTAGCATGTAGAGAATGGCC CTTTCTCGATGTATTCGACCACGCCATCCCCTCTCCTCGGGTGATTTTTA CGGTGTAGTCAACGAACCCACACACCAGGAGCGTCCGTCCGGATGTGTGT GTCCGACAACGAATTGATACATGTACGGTGGTGTCTCAACCTTCCCGGGG TTATGTTGAATTCCTCTATCCATACAAATACACAGCGTTGCTCTCCCTAG TTGTTATCCTCGCTCAAGCTGTGGTCCATGACACACTGAACGATGGATCA GCCCAAGATTTGGTGCCTCAGCATCTCCACGCGCTGAAAATTTCATACGT AGCGCCTCATTCGCAGTCGCATGTTGTTATGTACGTATTTTCTCATGACG ACATGTCCGTGCCAAATTTTGTCGGGAAAGGGGTGAAAGGCTGCGGCTGC GAGGGGTCATGTCTACCTCCTTTCCGAACCTATTGCAATGGGGTGCAAAA CAAAACATAAAGACCGACGAACATCCCAACTGAAAGATACTACTACTGTA GCACACTCGGTATCGAACATCGTCAGTGGAACCCACCACGAGTGTGCACC AAAGTCGATTTGTATCTCTTGCACTTCTATGCTGATGCATTCATTCTCTT GCTAAGCAATCTGTGTGAGGACCGACGTGGGGCTGGGACGTTGTCTGTGA CCACTTTGTCCTTGTCTTGGCCCCAGTAAAATGTCAAAACAGTTCAAGTT CCATTCTCAAACCCGCATGTCACACCGCAAGTAGCATCATAGGGCATCTC GGCACCCTGTGTGGTCCGGTTCGCCGGGCTCTCACCGGACCAGGCTCTCA CATCACCAAGCGCGAAGCGCCGTGAGGTATTCGGCGAGTCGCATGAAGGG TGCACAGCATCCTGCTAAGGGTGTTCGGCATCTTGTGCTTACTTCCTTGC GTACGGATGACAGCTGCGTATGACTTTCTGGTGCTTTCACTTCCAGAGAC AGCAGTAATAAGCACTGTGTAACTGCCTCGAGGGTGCTTGACCAACTTAT TACAACGTGGTCCGATCATCCCCTTTGCGCGGAGTGAGGGTTCTCGACCC CGCACAACATTATCTACTCGACCACCATTATGGTTAGCGCAAAAAAAAAA AACAGACGCAAAAAAAGAAGCGGTAACCTGGTTGCCGAGCTCACGAAGTG ATCGGCTTGTTTTACAACGTCGTTGGCAAGCGAAGAAAATCCAACTCCGA TGGCAAACACCGGGGGAGGGGGGAGTATTCGTTTGGGGGAACACTATTCT TGAAGCTGTTGGTGTTCATAAGAAAAGACGAACATTTGTTTCGCCGCCTT GCAGCTTGAGGCCAAAGAAAGATTGTTTTTGAACTACTGTACATCGCTCC GCCATGGATGGGCTTCTCGAATGACAATCGAAATTCGCAATGGACGCTCC ACATGAGTCGCGTGATTTTGGGTGCGTATTCTGGGAAGCCGCACGGTGCG CATGGCACGGGCAGCGGCCACGCGGGAGCACGTTGGATACCCTGATCGTG CTGCTGCCAACATTGATCACTATGCAGTCCCACAAACCTTGACCGGTGAA GCCAGCGTCCCTATCACGTGCCCTGCTAACCAATGGAAAGGCAACCTCTT TATCCACACAGGAATACTTGGAATCAAGCTTGCGCTACTTGCACCACAAG TTTGTGGCGGATGTTGGCGGGCACCGCACAGAAAATATCAAGGTGAGTAA CGTGACAACAGAGAGAGCTACAACACGAGCCATGGACACGATTGTGGCGG AACCCGAAGTTCCTGTACCTTTTGCATACATTGTACAAGAAATACCTACT CCGCTTAGAATCTAAATACCACAGCGGCGCGAATAGTTCTTCGCCGGCTC GTTTGATAGTCGACTTCCAAATGTTACATTCAAAAGAAATCTTTTACTGC TGCACTAAAATAGTCGGCTGTATTACGAGAAAAAGTCTAGCTCTTCACAC GCCATGGTACCCCATTGCAATTCAACCCTCTGCCCGTTAGGTGATGCAGG ACAACATGCTCCTGATCAAGGAAATCAACATGCAGCGAGCTCACAATAAG GCCGCCAAGCGAGTCTTAGAAGCCCAGGTGACAACAACATTGGTGTTCGC ACCGTTCGTTGTAGGGGTTCACCTATGTATCCGTCTGGGTGTACTGCCGT TCAAGATTATATACGTGGCAATGTATGGGTGGGTGTGCGAGATGTTTTGG GGACCCACCGCGCGTCACCGGGCCCAACAATGACGGAGGGCGTAGACTAC GGGTACACGCACTTGATTAAGCAGAAATTATGGACGGGAGTCCTGCTGTT GCAGCTGACACTTTGTTTTCAGCTACCGAAACGACATTCTGCACAGCTTT TGGCGCGACATGTCGATGGATGAATACAGAGTGTAGCAGCCCGCGTGTAT TAGCTATATCTTGAGGCTCGGTTAGAAAAAAAACTTTTGCCGCAAGCAAT CGGGCTCAACGACCAGCGCTGCAATAAAAGCTACGTTGCCCTCAATGGTG GCTACACGAAGGTTTCTTATCTTGTGCGATACGTTGCAGTGCGCTAATCC GAAACACTGCGATACCGTCAACATGATACCGTAATATAAAAGGTGAATAT GCTCAAACGATTTGGGACCTCTTCAAAACACCGGAAAGCAGCTGGCGTTG TGCACTCGTCCACTGCCGTGGTGGGCGACCGGCCCGAAACCAGCTACGAG GAACCAGCATCTATAATTGAGAACAACAAGGTGACAATTTTATGTCCGAG CTCTTGCAAGCAATTCGACGTTGAGATCAGATGAGCTAGTGCGAATTCTG CGGCACGCTATGTGTTAGTTTCCTTTGTTCCGTGATCTTGCTTGGCAAAC GTTCTTACCAATGGCCACCGGCGGTCGCACTGACTGTAGATGCATGTTCT TGCGGTTTGCAGCGTGCGCCCAATGCACGAAAGTACCAATAAAATATGTC TGCAGAGTTAGAGAGAGCTACAACATTTTCATCCCTCGCCGATTTGCATT CAGTTCGTTTCTCATCGCTTATGATGAGGTTCAGCATCGTTTACTCACGT TGGCACCACAACTCATCCTGAATGACTATATCCTCCAGGCAACGATTGCG AGTCTCAGGGCGTTGGTTGCTGATCTCGAAGGAAGGATTGTGTCAAATCG ACCCTACAGCAGAGAGATTCTCCCCCCAATGGACGGCGTCAACACCGTTT TCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:177528..181732+

>mRNA_E-siliculosus-1a_M_contig87.16727.1 ID=mRNA_E-siliculosus-1a_M_contig87.16727.1|Name=mRNA_E-siliculosus-1a_M_contig87.16727.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1818bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:177528..181732+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGGAAAAATTCAAATTTGTGCTCGACTTCAAAATCAAAGAGCTGAAGCG
CCAGATTGAGCCTCGCGAGACAGAGATCGGTAGCATGAAGGAACAGATCA
AGGAGATGGACAAGGAGCTTGAACAGCTGGAAAAATTCAAATTTGTGCTC
GACTTCAAAATCAAAGAGCTGAAGCGCCAGATTGAGCCTCGCGAGACAGA
GATCGGTAGCATGAAGGAACAGATCAAGGAGATGGACAAGGAGCTTGAAC
AGTTTCACAACAGTAATGCTCAACTAGACTTACTTATTGGGGAGCTTCGT
GAAAAGCTCGACGGGATGCAGGCCCAGAATTTGGACCAACGAAAACGGAT
TGCCGACCAAGAGGCTTCGCGCGGGCGCCTCCAGTTTCACAACAGTAATG
CTCAACTAGACTTACTTATTGGGGAGCTTCGTGAAAAGCTCGACGGGATG
CAGGCCCAGAATTTGGACCAACGAAAACGGATTGCCGACCAAGAGGCTTC
GCGCGGGCGCCTCCAGAAAGAGCTGTACGAGTGTGTCCAGCACATCCAAG
ATCCGCCAGCGTTGCGCGCACATGTCACCGCGATGTACAAATCAAATGTC
AACGTGGACCTGCCCAGTAATGAGATGGACGCTAATGTGATACACGAGTA
TCATCGACACAAGGTGAGCCAGCTCTATCATTGCCTAGCATGTAGAGAAT
GGCCCTTTCTCGATGTATTCGACCACGCCATCCCCTCTCCTCGGAAAGAG
CTGTACGAGTGTGTCCAGCACATCCAAGATCCGCCAGCGTTGCGCGCACA
TGTCACCGCGATGTACAAATCAAATGTCAACGTGGACCTGCCCAGTAATG
AGATGGACGCTAATGTGATACACGAGTATCATCGACACAAGGTGAGCCAG
CTCTATCATTGCCTAGCATGTAGAGAATGGCCCTTTCTCGATGTATTCGA
CCACGCCATCCCCTCTCCTCGGGAATACTTGGAATCAAGCTTGCGCTACT
TGCACCACAAGTTTGTGGCGGATGTTGGCGGGCACCGCACAGAAAATATC
AAGGAATACTTGGAATCAAGCTTGCGCTACTTGCACCACAAGTTTGTGGC
GGATGTTGGCGGGCACCGCACAGAAAATATCAAGGTGATGCAGGACAACA
TGCTCCTGATCAAGGAAATCAACATGCAGCGAGCTCACAATAAGGCCGCC
AAGCGAGTCTTAGAAGCCCAGGTGATGCAGGACAACATGCTCCTGATCAA
GGAAATCAACATGCAGCGAGCTCACAATAAGGCCGCCAAGCGAGTCTTAG
AAGCCCAGGTGAATATGCTCAAACGATTTGGGACCTCTTCAAAACACCGG
AAAGCAGCTGGCGTTGTGCACTCGTCCACTGCCGTGGTGGGCGACCGGCC
CGAAACCAGCTACGAGGAACCAGCATCTATAATTGAGAACAACAAGGTGA
ATATGCTCAAACGATTTGGGACCTCTTCAAAACACCGGAAAGCAGCTGGC
GTTGTGCACTCGTCCACTGCCGTGGTGGGCGACCGGCCCGAAACCAGCTA
CGAGGAACCAGCATCTATAATTGAGAACAACAAGGCAACGATTGCGAGTC
TCAGGGCGTTGGTTGCTGATCTCGAAGGAAGGATTGTGTCAAATCGACCC
TACAGCAGAGAGATTCTCCCCCCAATGGACGGCGTCAACACCGTTTTCTA
GGCAACGATTGCGAGTCTCAGGGCGTTGGTTGCTGATCTCGAAGGAAGGA
TTGTGTCAAATCGACCCTACAGCAGAGAGATTCTCCCCCCAATGGACGGC
GTCAACACCGTTTTCTAG
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