mRNA_E-siliculosus-1a_M_contig87.16718.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig87.16718.1
Unique NamemRNA_E-siliculosus-1a_M_contig87.16718.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig87.16718.1 vs. uniprot
Match: D7FW69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW69_ECTSI)

HSP 1 Score: 608 bits (1568), Expect = 2.850e-217
Identity = 305/309 (98.71%), Postives = 307/309 (99.35%), Query Frame = 1 
Query:    1 MKLTVGVASFSLTVVYAFQARPSGIPQGGGRRSTAALASTDGWVALPVNPSAGGRSRTVSFSPSNLEDLQVVEKILQQDQVGEACVLIIPSWRHHPVQYDCLSACLEALKIPTAVQPLPDGLWALLLQRLQVHSLRKAARKGVLEQLIVHALQRPFNHLDLALRLHSDRNTGRRITVIASDDSAWLVRAFVNSRSQQWRKEVPLDTAVLVGGYHKSIVGDLALDVFPNPPPSPPPDGRVVKFFSLNGREGGRVDGDGDVDLEASISCMSFEEDSESCILQEYEVEHSGWLSLLGSTSLLSLWVPRVLRA 927
            MKLTVGVASFSLTVVYAFQARP GIPQGGGRRSTAALASTDGWVALPVNPSAGGRSRTVSFSPSNLEDLQVVEKILQQDQVGEACVLIIPSWRHHPVQYDCLSACLEALKIPTAVQPLPDGLWALLLQRLQVHSLRKAARKGVLEQLIVHAL RPFNHLDLALRLHSDRNTGRRITVIASDDSAWLVRAFVNSRSQQWRKEVPLDTAVLVGGYHKSIVGDLALDVFPNPPPSPPPDGRVVKFFSLNGREGGRVDG+GD+DLEASISCMSFEEDSESCILQEYEVEHSGWLSLLGSTSLLSLWVPRVLRA
Sbjct:    1 MKLTVGVASFSLTVVYAFQARPLGIPQGGGRRSTAALASTDGWVALPVNPSAGGRSRTVSFSPSNLEDLQVVEKILQQDQVGEACVLIIPSWRHHPVQYDCLSACLEALKIPTAVQPLPDGLWALLLQRLQVHSLRKAARKGVLEQLIVHALHRPFNHLDLALRLHSDRNTGRRITVIASDDSAWLVRAFVNSRSQQWRKEVPLDTAVLVGGYHKSIVGDLALDVFPNPPPSPPPDGRVVKFFSLNGREGGRVDGNGDIDLEASISCMSFEEDSESCILQEYEVEHSGWLSLLGSTSLLSLWVPRVLRA 309
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW69_ECTSI2.850e-21798.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig87contigE-siliculosus-1a_M_contig87:126960..129712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size930
Model size1366
Exons4
Ec32 orthologEc-01_003610.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig87.16718.1prot_E-siliculosus-1a_M_contig87.16718.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig87 127396..129712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936325.417776-UTR-E-siliculosus-1a_M_contig87:126959..1273951622936325.417776-UTR-E-siliculosus-1a_M_contig87:126959..127395Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 126960..127395 -
1696251026.2687862-UTR-E-siliculosus-1a_M_contig87:126959..1273951696251026.2687862-UTR-E-siliculosus-1a_M_contig87:126959..127395Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig87 126960..127395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936325.4329965-CDS-E-siliculosus-1a_M_contig87:127395..1279321622936325.4329965-CDS-E-siliculosus-1a_M_contig87:127395..127932Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 127396..127932 -
1696251026.2878454-CDS-E-siliculosus-1a_M_contig87:127395..1279321696251026.2878454-CDS-E-siliculosus-1a_M_contig87:127395..127932Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 127396..127932 -
1622936325.4482045-CDS-E-siliculosus-1a_M_contig87:128200..1283521622936325.4482045-CDS-E-siliculosus-1a_M_contig87:128200..128352Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 128201..128352 -
1696251026.305471-CDS-E-siliculosus-1a_M_contig87:128200..1283521696251026.305471-CDS-E-siliculosus-1a_M_contig87:128200..128352Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 128201..128352 -
1622936325.4661434-CDS-E-siliculosus-1a_M_contig87:128716..1288501622936325.4661434-CDS-E-siliculosus-1a_M_contig87:128716..128850Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 128717..128850 -
1696251026.3169997-CDS-E-siliculosus-1a_M_contig87:128716..1288501696251026.3169997-CDS-E-siliculosus-1a_M_contig87:128716..128850Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 128717..128850 -
1622936325.482618-CDS-E-siliculosus-1a_M_contig87:129605..1297121622936325.482618-CDS-E-siliculosus-1a_M_contig87:129605..129712Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 129606..129712 -
1696251026.3282332-CDS-E-siliculosus-1a_M_contig87:129605..1297121696251026.3282332-CDS-E-siliculosus-1a_M_contig87:129605..129712Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 129606..129712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig87.16718.1

>prot_E-siliculosus-1a_M_contig87.16718.1 ID=prot_E-siliculosus-1a_M_contig87.16718.1|Name=mRNA_E-siliculosus-1a_M_contig87.16718.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=310bp
MKLTVGVASFSLTVVYAFQARPSGIPQGGGRRSTAALASTDGWVALPVNP
SAGGRSRTVSFSPSNLEDLQVVEKILQQDQVGEACVLIIPSWRHHPVQYD
CLSACLEALKIPTAVQPLPDGLWALLLQRLQVHSLRKAARKGVLEQLIVH
ALQRPFNHLDLALRLHSDRNTGRRITVIASDDSAWLVRAFVNSRSQQWRK
EVPLDTAVLVGGYHKSIVGDLALDVFPNPPPSPPPDGRVVKFFSLNGREG
GRVDGDGDVDLEASISCMSFEEDSESCILQEYEVEHSGWLSLLGSTSLLS
LWVPRVLRA*
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mRNA from alignment at E-siliculosus-1a_M_contig87:126960..129712-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig87.16718.1 ID=mRNA_E-siliculosus-1a_M_contig87.16718.1|Name=mRNA_E-siliculosus-1a_M_contig87.16718.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2753bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:126960..129712- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAAGCTAACCGTCGGCGTGGCCTCCTTCTCGCTGACCGTTGTCTACGC
GTTTCAGGCACGTCCTTCCGGAATACCTCAAGGAGGTGGGCGACGTTCAA
CGGCTGCGTGAGTCTTACATTTGAGAGCCAGCTGAATGTATGCATAGCTC
ATCACACGCCTGCATTTGATCTGTTCGTCTCCTCTCGGAACCATTTGTCG
TTAGAAGAATGCGGATTTCAGGATCGCGACGGGAACCGATACCACATCTT
CTGCTGTAGTTTAGTAGCTGCAGCTCTGCAGATTTTTTTGCTACTCCATG
GTTGTAGAATGATCAGCAATTGGTCGACTATCCGTGTAGACTGCAGTACG
CTGCTCTGTGCCGCTGTGTCCCCGTGATTCAGTAGCAAGTACCAACAGGG
GGCTTTGCCGCCTCGGCAGCATTCACAGGAAGGGTGGACACGCCTAAAGG
TTTCAAATACCAAATACCAAATACCCGATGACCTAATCATCGCTGCCGAA
CGGATTTGGTGTGCGCGTCATGAGTGTAATCACTGCTGTGTCATCTGTAC
AACGTACGTATGATACAGCAACAGCAGTAGATAGATATCGGACCCGTCAG
CCCCCTTCGCTGAGAGCTGAAATTTGTCCACTAACACAATCGCATCATGT
AACCTCCTAGTGCCGCCGATCGAGACGCGATTTGATGCACACAATACAAC
GTTGATTTTGCTTGTTGCCGTCGAAATGCATTGAGTTACTTCGATCTCTT
CTGTGCTGTTTGGAAGCAAATCTGATCTCCGCAACTAACTACGCATACCA
TATAGATTAGTATGCATATGAAGTAATGGCCCCAACACGTTTCTGGGTGT
GGTTCGTTGCAGGTTAGCATCGACCGATGGCTGGGTCGCCCTGCCGGTGA
ATCCCTCCGCAGGTGGCCGGTCCAGAACAGTTTCGTTTAGCCCTTCCAAC
CTGGAAGACCTGCAGGTCGTTGAAAAAATTCTCCAACAAGATCAAGGTAA
ATGAACAGACTACTGTAGATGGGCCGTTCGTTCTCTAGCGAGACTTAATC
AATACATTCTCACCGCTCTCTCGTCAAACCCCAGCCTGCTTCTTCGCTGA
GCGTTTAGTCGTTGATTTGGAGTACTGCACCTCTAGATACAAAGTTCCAC
ACGAGCGCCCCCTTTCCGTCAAAGCTGAAGGCCACATTTACACCGTTGTG
TATTCTGTATACTCAGCTGGCGGTTACTTGCTTTGTGCTACTCAGCTGGC
AAGGTGTGATGTTGTCAACTTGCGGCGCGCCCCTACCCCGGTATGCTCTG
TGTTCCACTGGGCTTAGTCCTTACACCCCATCCTGTTTTGTGTTTCGTCT
TGTTTTGTAGTCGGTGAAGCTTGCGTCTTGATCATTCCGAGCTGGCGGCA
TCATCCTGTCCAGTATGACTGTCTGTCAGCCTGTTTAGAGGCCCTCAAGA
TCCCCACTGCAGTGCAGCCCCTTCCCGATGGATTGTGGGCACTTCTCCTT
CAACGCCTTCAGGTGAACCCTTGGAATATGTTGTGGTGGCCTTACGTGCA
CAGCAATATTTCTTTGTTTTAGGACATGCCCGTTGGCGGGCTTCTGTCCG
GAAAACGTCCTGCTCTAGGCGGTGCACGAGGGTTACTTGCACCCGGTTGT
GTCGAGCAAGCACCATCGTTCAGCGAAGATTGCAGCCATTTGTGTTTGTT
CGCTGGGTAAAACGCAGGTGCACTCTGCAGTTATTGCCGTTCGTAGTTGT
GATCTCGTCGAGTCCTGTGGAAACCACCAGGTACATTCATTGCGCAAAGC
TGCGAGGAAAGGAGTCCTGGAACAACTGATCGTGCACGCTCTGCAAAGGC
CATTTAATCATTTGGATCTAGCGCTCAGACTGCACTCAGATCGGAACACC
GGGCGTCGTATAACCGTCATCGCATCGGACGACTCGGCGTGGCTTGTGAG
GGCATTCGTGAACAGCCGCTCTCAACAGTGGCGTAAAGAGGTGCCTTTGG
ACACGGCGGTACTCGTCGGTGGGTATCATAAGAGCATTGTTGGAGATCTA
GCCTTGGATGTCTTTCCCAACCCACCACCATCACCACCTCCGGATGGACG
CGTTGTTAAATTTTTCAGCTTGAACGGTCGCGAAGGTGGTCGAGTGGATG
GGGATGGCGACGTTGACCTAGAGGCTTCGATATCGTGCATGTCGTTTGAA
GAAGACTCCGAGAGCTGTATCCTCCAGGAGTACGAGGTTGAACACAGCGG
TTGGCTCTCTTTGCTAGGATCAACCTCTCTGCTGAGCTTATGGGTTCCTC
GTGTTTTGCGTGCTTAGCCGTTCGTTCTGTAAGTACGGTAGGATCCTGGT
TTCTATCTTTTCGTGTGTGGGAATCGTGTGGGCATCCGGTTAGCTGGCAT
GGTATTAGTGTCCGTTGCCGATGGCGTACACAGCTTCTTCCGCGTGAAAC
CCAATCTTGTACAACTTGTCTAGAGATTTTGTTGAAATTGTATTGTGTTT
GACATAACCGATCACGTCCACGGCTGTTATTTGTGACCTCTTCCGTACGG
TCGATTTTGGTATGGTTTTTGGTCACCTATAGCAGCAGTTAATCGCCTGC
TCTCCGTCGTGTGCACTGAAGCCACGGTATTGGAAAAGACTTGCACCCTG
AAGCATCAGATAATACATCATACTGGTGATGGGCAAAGCAAGAAAAGGTC
GAATGGAGCTCCAGGGTAGTATGCGAATGTCGAAAGGTTCGAGGCCATTG
CCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:126960..129712-

>mRNA_E-siliculosus-1a_M_contig87.16718.1 ID=mRNA_E-siliculosus-1a_M_contig87.16718.1|Name=mRNA_E-siliculosus-1a_M_contig87.16718.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1860bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:126960..129712- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGAAGCTAACCGTCGGCGTGGCCTCCTTCTCGCTGACCGTTGTCTACGC
GTTTCAGGCACGTCCTTCCGGAATACCTCAAGGAGGTGGGCGACGTTCAA
CGGCTGCATGAAGCTAACCGTCGGCGTGGCCTCCTTCTCGCTGACCGTTG
TCTACGCGTTTCAGGCACGTCCTTCCGGAATACCTCAAGGAGGTGGGCGA
CGTTCAACGGCTGCGTTAGCATCGACCGATGGCTGGGTCGCCCTGCCGGT
GAATCCCTCCGCAGGTGGCCGGTCCAGAACAGTTTCGTTTAGCCCTTCCA
ACCTGGAAGACCTGCAGGTCGTTGAAAAAATTCTCCAACAAGATCAAGGT
TAGCATCGACCGATGGCTGGGTCGCCCTGCCGGTGAATCCCTCCGCAGGT
GGCCGGTCCAGAACAGTTTCGTTTAGCCCTTCCAACCTGGAAGACCTGCA
GGTCGTTGAAAAAATTCTCCAACAAGATCAAGTCGGTGAAGCTTGCGTCT
TGATCATTCCGAGCTGGCGGCATCATCCTGTCCAGTATGACTGTCTGTCA
GCCTGTTTAGAGGCCCTCAAGATCCCCACTGCAGTGCAGCCCCTTCCCGA
TGGATTGTGGGCACTTCTCCTTCAACGCCTTCAGTCGGTGAAGCTTGCGT
CTTGATCATTCCGAGCTGGCGGCATCATCCTGTCCAGTATGACTGTCTGT
CAGCCTGTTTAGAGGCCCTCAAGATCCCCACTGCAGTGCAGCCCCTTCCC
GATGGATTGTGGGCACTTCTCCTTCAACGCCTTCAGGTACATTCATTGCG
CAAAGCTGCGAGGAAAGGAGTCCTGGAACAACTGATCGTGCACGCTCTGC
AAAGGCCATTTAATCATTTGGATCTAGCGCTCAGACTGCACTCAGATCGG
AACACCGGGCGTCGTATAACCGTCATCGCATCGGACGACTCGGCGTGGCT
TGTGAGGGCATTCGTGAACAGCCGCTCTCAACAGTGGCGTAAAGAGGTGC
CTTTGGACACGGCGGTACTCGTCGGTGGGTATCATAAGAGCATTGTTGGA
GATCTAGCCTTGGATGTCTTTCCCAACCCACCACCATCACCACCTCCGGA
TGGACGCGTTGTTAAATTTTTCAGCTTGAACGGTCGCGAAGGTGGTCGAG
TGGATGGGGATGGCGACGTTGACCTAGAGGCTTCGATATCGTGCATGTCG
TTTGAAGAAGACTCCGAGAGCTGTATCCTCCAGGAGTACGAGGTTGAACA
CAGCGGTTGGCTCTCTTTGCTAGGATCAACCTCTCTGCTGAGCTTATGGG
TTCCTCGTGTTTTGCGTGCTTAGGTACATTCATTGCGCAAAGCTGCGAGG
AAAGGAGTCCTGGAACAACTGATCGTGCACGCTCTGCAAAGGCCATTTAA
TCATTTGGATCTAGCGCTCAGACTGCACTCAGATCGGAACACCGGGCGTC
GTATAACCGTCATCGCATCGGACGACTCGGCGTGGCTTGTGAGGGCATTC
GTGAACAGCCGCTCTCAACAGTGGCGTAAAGAGGTGCCTTTGGACACGGC
GGTACTCGTCGGTGGGTATCATAAGAGCATTGTTGGAGATCTAGCCTTGG
ATGTCTTTCCCAACCCACCACCATCACCACCTCCGGATGGACGCGTTGTT
AAATTTTTCAGCTTGAACGGTCGCGAAGGTGGTCGAGTGGATGGGGATGG
CGACGTTGACCTAGAGGCTTCGATATCGTGCATGTCGTTTGAAGAAGACT
CCGAGAGCTGTATCCTCCAGGAGTACGAGGTTGAACACAGCGGTTGGCTC
TCTTTGCTAGGATCAACCTCTCTGCTGAGCTTATGGGTTCCTCGTGTTTT
GCGTGCTTAG
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