mRNA_E-siliculosus-1a_M_contig87.16706.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig87.16706.1 vs. uniprot
Match: A0A6H5L4Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q4_9PHAE) HSP 1 Score: 168 bits (425), Expect = 6.450e-47 Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 1
Query: 1039 LGILLCQDNHLSIDTLIEIDYAMGRPKRPVRDLVGQVQRSIDSQNFLSKGVETVQQTKATCVPQGGEPSVKLAPGQETSIQVSFGRKDNIIGSIRV 1326
LGILLCQDNHLS DTLIEIDYAM RPKRPVRDLVGQVQRSID+QNFLSKGVET QQTK VP GGEPSV+LAPGQETSIQVSFGRKDNIIGSI V
Sbjct: 11 LGILLCQDNHLSADTLIEIDYAMARPKRPVRDLVGQVQRSIDTQNFLSKGVETGQQTKVAGVPHGGEPSVQLAPGQETSIQVSFGRKDNIIGSIPV 106
BLAST of mRNA_E-siliculosus-1a_M_contig87.16706.1 vs. uniprot
Match: F0YJL1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJL1_AURAN) HSP 1 Score: 63.2 bits (152), Expect = 6.190e-7 Identity = 31/90 (34.44%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 1246 VKLAPGQETSIQVSFGRKDNIIGSIRVTNETCLDEARALIDPLLRCSERAYGFLSTMGG-VIPPEDEQARRVVWDCKAPVRLRPASWVAI 1512
+ L P Q ++QVS+GR+ N+IG++R + T L E R LI L ++ +Y ++ G P +E R V+ DC ++LRP++W+ +
Sbjct: 391 ILLHPDQNANVQVSYGRRPNVIGNLRCSATTSLAEMRYLITKNLSLADESYLMIAHDGTRAFPRHEEDKRHVLLDCGHNLQLRPSTWLTL 480
BLAST of mRNA_E-siliculosus-1a_M_contig87.16706.1 vs. uniprot
Match: D7FW80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW80_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 3.640e-6 Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 1
Query: 238 VPLLRSDGTGISTIRALSLKRCGIGDAG 321
+PLLRSDGTGISTIRALSLKRCGIGDAG
Sbjct: 1 MPLLRSDGTGISTIRALSLKRCGIGDAG 28 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig87.16706.1 >prot_E-siliculosus-1a_M_contig87.16706.1 ID=prot_E-siliculosus-1a_M_contig87.16706.1|Name=mRNA_E-siliculosus-1a_M_contig87.16706.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=508bp MPRNMELHDRDKIFDGTAVRKLAQTWSKDPHFSSLNLSAHNIGAGAAETLback to top mRNA from alignment at E-siliculosus-1a_M_contig87:36909..41541+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig87.16706.1 ID=mRNA_E-siliculosus-1a_M_contig87.16706.1|Name=mRNA_E-siliculosus-1a_M_contig87.16706.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4633bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:36909..41541+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:36909..41541+ >mRNA_E-siliculosus-1a_M_contig87.16706.1 ID=mRNA_E-siliculosus-1a_M_contig87.16706.1|Name=mRNA_E-siliculosus-1a_M_contig87.16706.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3048bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:36909..41541+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |